Spo13478.1 (mRNA) | SpinachBase

Overview


Name	Spo13478.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RING finger-like
Location	SpoScf_00786 : 157643 .. 158164 (+)
Sequence length	522

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTCATCCGTAAGCCTCATAGTTATGCTACTAATAATGATCATCATTCCCACCGTTCTATACAGTTTCTTCTTCATCACCAACTGCCCACTAAACCTTTTTGGGTTCCTTTGTGGCCGACGTGGGTCCCCCGCCGACATCGACAACTTTGATCAAACGAACAAAGTGGTGGAGCAAGAAGAAGGTGAGAGCACAAGTGACAAGGATAAGAACAACATAGAGTTAGTTATCGATGTGAACTCGAAGCTAGGGAAAGATGAAGAATGTCCGATTTGTTTAGCTGTTTTTATACAAGGGGATGAGCTTCGACAACTCAATTCTTGCAAGCATTTGTTTCATAGGAGTTGTATTGATAAATGGCTTTCTACTCATTGTAATTGCCCAGTTTGCCGAGCATTTATTGTTAATAATCAGTCTAAGCCTATCAAGGAAAGAGAACATAATCGTGTTTTGGTATCAAGAGAAGTTGATAGGCATGATCATTGGCAAGGATTGCCTGATTCAGCTGGCATGATTTGA

mRNA sequence

ATGATGTCATCCGTAAGCCTCATAGTTATGCTACTAATAATGATCATCATTCCCACCGTTCTATACAGTTTCTTCTTCATCACCAACTGCCCACTAAACCTTTTTGGGTTCCTTTGTGGCCGACGTGGGTCCCCCGCCGACATCGACAACTTTGATCAAACGAACAAAGTGGTGGAGCAAGAAGAAGGTGAGAGCACAAGTGACAAGGATAAGAACAACATAGAGTTAGTTATCGATGTGAACTCGAAGCTAGGGAAAGATGAAGAATGTCCGATTTGTTTAGCTGTTTTTATACAAGGGGATGAGCTTCGACAACTCAATTCTTGCAAGCATTTGTTTCATAGGAGTTGTATTGATAAATGGCTTTCTACTCATTGTAATTGCCCAGTTTGCCGAGCATTTATTGTTAATAATCAGTCTAAGCCTATCAAGGAAAGAGAACATAATCGTGTTTTGGTATCAAGAGAAGTTGATAGGCATGATCATTGGCAAGGATTGCCTGATTCAGCTGGCATGATTTGA

Coding sequence (CDS)

ATGATGTCATCCGTAAGCCTCATAGTTATGCTACTAATAATGATCATCATTCCCACCGTTCTATACAGTTTCTTCTTCATCACCAACTGCCCACTAAACCTTTTTGGGTTCCTTTGTGGCCGACGTGGGTCCCCCGCCGACATCGACAACTTTGATCAAACGAACAAAGTGGTGGAGCAAGAAGAAGGTGAGAGCACAAGTGACAAGGATAAGAACAACATAGAGTTAGTTATCGATGTGAACTCGAAGCTAGGGAAAGATGAAGAATGTCCGATTTGTTTAGCTGTTTTTATACAAGGGGATGAGCTTCGACAACTCAATTCTTGCAAGCATTTGTTTCATAGGAGTTGTATTGATAAATGGCTTTCTACTCATTGTAATTGCCCAGTTTGCCGAGCATTTATTGTTAATAATCAGTCTAAGCCTATCAAGGAAAGAGAACATAATCGTGTTTTGGTATCAAGAGAAGTTGATAGGCATGATCATTGGCAAGGATTGCCTGATTCAGCTGGCATGATTTGA

Protein sequence

MMSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRRGSPADIDNFDQTNKVVEQEEGESTSDKDKNNIELVIDVNSKLGKDEECPICLAVFIQGDELRQLNSCKHLFHRSCIDKWLSTHCNCPVCRAFIVNNQSKPIKEREHNRVLVSREVDRHDHWQGLPDSAGMI

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo13478	Spo13478	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo13478.1	Spo13478.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13478.1.exon.1	Spo13478.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13478.1.CDS.1	Spo13478.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo13478.1 vs. NCBI nr
Match: gi|902073772|gb|KNA02964.1| (hypothetical protein SOVF_213590 [Spinacia oleracea])

HSP 1 Score: 350.5 bits (898), Expect = 1.700e-93
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1


		  
Query: 1   MMSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRRGSPADIDNFDQTNKVVEQ 60
           MMSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRRGSPADIDNFDQTNKVVEQ
Sbjct: 1   MMSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRRGSPADIDNFDQTNKVVEQ 60

Query: 61  EEGESTSDKDKNNIELVIDVNSKLGKDEECPICLAVFIQGDELRQLNSCKHLFHRSCIDK 120
           EEGESTSDKDKNNIELVIDVNSKLGKDEECPICLAVFIQGDELRQLNSCKHLFHRSCIDK
Sbjct: 61  EEGESTSDKDKNNIELVIDVNSKLGKDEECPICLAVFIQGDELRQLNSCKHLFHRSCIDK 120

Query: 121 WLSTHCNCPVCRAFIVNNQSKPIKEREHNRVLVSREVDRHDHWQGLPDSAGMI 174
           WLSTHCNCPVCRAFIVNNQSKPIKEREHNRVLVSREVDRHDHWQGLPDSAGMI
Sbjct: 121 WLSTHCNCPVCRAFIVNNQSKPIKEREHNRVLVSREVDRHDHWQGLPDSAGMI 173

[Close]

BLAST of Spo13478.1 vs. NCBI nr
Match: gi|731364138|ref|XP_010693811.1| (PREDICTED: RING-H2 finger protein ATL33-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 250.8 bits (639), Expect = 1.800e-63
Identity = 124/174 (71.26%), Postives = 147/174 (84.48%), Query Frame = 1


		  
Query: 1   MMSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRRGSPADIDNFD-QTNKVVE 60
           MMSSVS IVMLLIMIIIPT+LYSFFF+ NCP +    L  RR  P D++NFD +++K+V+
Sbjct: 1   MMSSVSFIVMLLIMIIIPTILYSFFFLINCPPSPIELLRRRRNRPTDVENFDPRSSKMVD 60

Query: 61  QEEGESTSDKDKNNIELVIDVNSKLGKDEECPICLAVFIQGDELRQLNSCKHLFHRSCID 120
           +++ E+ S+K+KNNIELVI   SKLGKD ECP+CL++FI+G+ELRQLN C HLFHR CID
Sbjct: 61  EDDDENKSNKNKNNIELVIASISKLGKDVECPVCLSIFIEGEELRQLNICNHLFHRCCID 120

Query: 121 KWLSTHCNCPVCRAFIVNNQSKPIKEREHNRVLVSREVDRHDHWQGLPDSAGMI 174
           KWLSTHCNCPVCRAF V N SKPIKE EHNRVL SREVDRHDHWQGLPDSAG++
Sbjct: 121 KWLSTHCNCPVCRAF-VGNPSKPIKEGEHNRVLASREVDRHDHWQGLPDSAGLV 173

[Close]

BLAST of Spo13478.1 vs. NCBI nr
Match: gi|559148730|gb|AHB08887.1| (RING-H2 finger protein ATL2J [Suaeda glauca])

HSP 1 Score: 217.6 bits (553), Expect = 1.700e-53
Identity = 111/175 (63.43%), Postives = 139/175 (79.43%), Query Frame = 1


		  
Query: 1   MMSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRRGSPADIDNFDQTNKVVEQ 60
           MMSS+S I+MLLIM+IIPT+LY+FFF+ NCP N F FL  RR    D  N  + +K+  +
Sbjct: 1   MMSSISFIIMLLIMLIIPTILYTFFFLINCPSNPFNFL--RRNHDVDNVNNARRSKISNE 60

Query: 61  EEGE-STSDKDKNNIELVIDVNSKLGKDEECPICLAVFIQGDELRQLNSCKHLFHRSCID 120
           E+ E ++S+KDKN+IELV   N  LGKD ECPICL++F+QG+EL+QL  CKH+FH SCID
Sbjct: 61  EDDEDNSSNKDKNSIELVATSNETLGKDVECPICLSIFVQGEELKQLKICKHMFHTSCID 120

Query: 121 KWLSTHCNCPVCRAFIVNNQSKPIKERE-HNRVLVSREVDRHDHWQGLPDSAGMI 174
           KWLSTHCNCPVCR F V N +K +KE+E +NRVLVSR+VDRHD WQGLPDSAG++
Sbjct: 121 KWLSTHCNCPVCRGF-VGNHAKHMKEKEVNNRVLVSRDVDRHDLWQGLPDSAGLV 172

[Close]

BLAST of Spo13478.1 vs. NCBI nr
Match: gi|255573615|ref|XP_002527730.1| (PREDICTED: RING-H2 finger protein ATL33 [Ricinus communis])

HSP 1 Score: 110.5 bits (275), Expect = 2.900e-21
Identity = 68/184 (36.96%), Postives = 95/184 (51.63%), Query Frame = 1


		  
Query: 2   MSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRRGSPADIDNF----DQTNKV 61
           +S +  I+ L+ +I IP ++Y+FFF   CP   F     RR    D D F    +  N  
Sbjct: 26  LSPLEFILALIAVIAIPALIYTFFFSIKCPPGPFR---SRRRHRTDSDEFFASSNDDNNS 85

Query: 62  VEQEEGESTSDKDKNNIELVIDVNSKLGKDEECPICLAVFIQGDELRQLNSCKHLFHRSC 121
              E  +  SD        V D+ S      ECP+CL+V+ +G+E++QL+SCKH FH SC
Sbjct: 86  SPSENKDGVSDVKYQKDTHVKDIGS------ECPVCLSVYAEGEEVKQLSSCKHSFHASC 145

Query: 122 IDKWLSTHCNCPVCRAFIV--------NNQSKPIKEREHNRVLVSREVDRHDHWQGLPDS 174
           ID WL++H NCPVCRA +         NN +        N V  +R  D  D  QGLPD+
Sbjct: 146 IDMWLNSHSNCPVCRASVPVKKPNNNNNNNNNNNNTGSSNNVSSARSRDASDFHQGLPDA 200

[Close]

BLAST of Spo13478.1 vs. NCBI nr
Match: gi|697098801|ref|XP_009628564.1| (PREDICTED: RING-H2 finger protein ATL33 [Nicotiana tomentosiformis])

HSP 1 Score: 109.0 bits (271), Expect = 8.400e-21
Identity = 63/177 (35.59%), Postives = 97/177 (54.80%), Query Frame = 1


		  
Query: 2   MSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRRGSPADIDNFDQTNKVVEQE 61
           MS +  I+ L+I+I+IPT++Y+F +   CP N+F    G    PA               
Sbjct: 1   MSPLFAILSLIILIVIPTLIYAFIYALKCPQNIFRRSSGENSGPA--------------- 60

Query: 62  EGESTSDKDKNNIELVIDVNSK--LGKDE---ECPICLAVFIQGDELRQLNSCKHLFHRS 121
              ++      ++++V++VN K     DE   ECP+CL  F++G+E+RQL +CKH++H  
Sbjct: 61  ---ASKTGITQHMDMVLNVNYKKETSSDESGNECPVCLTAFVEGEEVRQLKTCKHMYHVV 120

Query: 122 CIDKWLSTHCNCPVCRAFIVNNQSKPIKEREHNRVLVSREVDRHDHWQGLPDSAGMI 174
           CIDKWL +H +CPVCRA I      P+K      V++       D  QGLPD+A ++
Sbjct: 121 CIDKWLYSHSSCPVCRASI------PVKRPRRPPVIID-----DDFRQGLPDAASLV 148

[Close]

BLAST of Spo13478.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q748_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_213590 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.200e-93
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1


		  
Query: 1   MMSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRRGSPADIDNFDQTNKVVEQ 60
           MMSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRRGSPADIDNFDQTNKVVEQ
Sbjct: 1   MMSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRRGSPADIDNFDQTNKVVEQ 60

Query: 61  EEGESTSDKDKNNIELVIDVNSKLGKDEECPICLAVFIQGDELRQLNSCKHLFHRSCIDK 120
           EEGESTSDKDKNNIELVIDVNSKLGKDEECPICLAVFIQGDELRQLNSCKHLFHRSCIDK
Sbjct: 61  EEGESTSDKDKNNIELVIDVNSKLGKDEECPICLAVFIQGDELRQLNSCKHLFHRSCIDK 120

Query: 121 WLSTHCNCPVCRAFIVNNQSKPIKEREHNRVLVSREVDRHDHWQGLPDSAGMI 174
           WLSTHCNCPVCRAFIVNNQSKPIKEREHNRVLVSREVDRHDHWQGLPDSAGMI
Sbjct: 121 WLSTHCNCPVCRAFIVNNQSKPIKEREHNRVLVSREVDRHDHWQGLPDSAGMI 173

[Close]

BLAST of Spo13478.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BFH4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g068400 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.200e-63
Identity = 124/174 (71.26%), Postives = 147/174 (84.48%), Query Frame = 1


		  
Query: 1   MMSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRRGSPADIDNFD-QTNKVVE 60
           MMSSVS IVMLLIMIIIPT+LYSFFF+ NCP +    L  RR  P D++NFD +++K+V+
Sbjct: 1   MMSSVSFIVMLLIMIIIPTILYSFFFLINCPPSPIELLRRRRNRPTDVENFDPRSSKMVD 60

Query: 61  QEEGESTSDKDKNNIELVIDVNSKLGKDEECPICLAVFIQGDELRQLNSCKHLFHRSCID 120
           +++ E+ S+K+KNNIELVI   SKLGKD ECP+CL++FI+G+ELRQLN C HLFHR CID
Sbjct: 61  EDDDENKSNKNKNNIELVIASISKLGKDVECPVCLSIFIEGEELRQLNICNHLFHRCCID 120

Query: 121 KWLSTHCNCPVCRAFIVNNQSKPIKEREHNRVLVSREVDRHDHWQGLPDSAGMI 174
           KWLSTHCNCPVCRAF V N SKPIKE EHNRVL SREVDRHDHWQGLPDSAG++
Sbjct: 121 KWLSTHCNCPVCRAF-VGNPSKPIKEGEHNRVLASREVDRHDHWQGLPDSAGLV 173

[Close]

BLAST of Spo13478.1 vs. UniProtKB/TrEMBL
Match: V5Q0U5_9CARY (RING-H2 finger protein ATL2J OS=Suaeda glauca PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.200e-53
Identity = 111/175 (63.43%), Postives = 139/175 (79.43%), Query Frame = 1


		  
Query: 1   MMSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRRGSPADIDNFDQTNKVVEQ 60
           MMSS+S I+MLLIM+IIPT+LY+FFF+ NCP N F FL  RR    D  N  + +K+  +
Sbjct: 1   MMSSISFIIMLLIMLIIPTILYTFFFLINCPSNPFNFL--RRNHDVDNVNNARRSKISNE 60

Query: 61  EEGE-STSDKDKNNIELVIDVNSKLGKDEECPICLAVFIQGDELRQLNSCKHLFHRSCID 120
           E+ E ++S+KDKN+IELV   N  LGKD ECPICL++F+QG+EL+QL  CKH+FH SCID
Sbjct: 61  EDDEDNSSNKDKNSIELVATSNETLGKDVECPICLSIFVQGEELKQLKICKHMFHTSCID 120

Query: 121 KWLSTHCNCPVCRAFIVNNQSKPIKERE-HNRVLVSREVDRHDHWQGLPDSAGMI 174
           KWLSTHCNCPVCR F V N +K +KE+E +NRVLVSR+VDRHD WQGLPDSAG++
Sbjct: 121 KWLSTHCNCPVCRGF-VGNHAKHMKEKEVNNRVLVSRDVDRHDLWQGLPDSAGLV 172

[Close]

BLAST of Spo13478.1 vs. UniProtKB/TrEMBL
Match: B9SP11_RICCO (RING-H2 finger protein ATL2J, putative OS=Ricinus communis GN=RCOM_1247640 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.000e-21
Identity = 68/184 (36.96%), Postives = 95/184 (51.63%), Query Frame = 1


		  
Query: 2   MSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRRGSPADIDNF----DQTNKV 61
           +S +  I+ L+ +I IP ++Y+FFF   CP   F     RR    D D F    +  N  
Sbjct: 26  LSPLEFILALIAVIAIPALIYTFFFSIKCPPGPFR---SRRRHRTDSDEFFASSNDDNNS 85

Query: 62  VEQEEGESTSDKDKNNIELVIDVNSKLGKDEECPICLAVFIQGDELRQLNSCKHLFHRSC 121
              E  +  SD        V D+ S      ECP+CL+V+ +G+E++QL+SCKH FH SC
Sbjct: 86  SPSENKDGVSDVKYQKDTHVKDIGS------ECPVCLSVYAEGEEVKQLSSCKHSFHASC 145

Query: 122 IDKWLSTHCNCPVCRAFIV--------NNQSKPIKEREHNRVLVSREVDRHDHWQGLPDS 174
           ID WL++H NCPVCRA +         NN +        N V  +R  D  D  QGLPD+
Sbjct: 146 IDMWLNSHSNCPVCRASVPVKKPNNNNNNNNNNNNTGSSNNVSSARSRDASDFHQGLPDA 200

[Close]

BLAST of Spo13478.1 vs. UniProtKB/TrEMBL
Match: A0A0D2TM30_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G103200 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.100e-18
Identity = 66/178 (37.08%), Postives = 100/178 (56.18%), Query Frame = 1


		  
Query: 2   MSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRR--GSPADIDNFDQ-TNKVV 61
           +S +  I+ L+ +I IP ++YSFFF   CP     +  G R   SP D+  ++  ++ VV
Sbjct: 134 LSPLEFILALMAVITIPALIYSFFFAVKCP----PWSSGERHHDSPEDLPGYNHGSSTVV 193

Query: 62  EQEEGESTSDKDKNNIELVIDVNSK-LGKDEECPICLAVFIQGDELRQLNSCKHLFHRSC 121
           E  E      +  + ++   + +SK +G   ECP+CL+VF  G+E++QL+ CKH FH +C
Sbjct: 194 EITERRR---EPVSGVKYQKETHSKEIG--NECPVCLSVFADGEEVKQLSGCKHSFHTTC 253

Query: 122 IDKWLSTHCNCPVCRAFIVNNQSKPIKEREHNRVLV--SREVDRHDHWQGLPDSAGMI 174
           ID WL+ H NCP+CRA      S  +K   +NR     S      DH QGLPD+A ++
Sbjct: 254 IDLWLNNHNNCPICRA------SVAVKRPNNNRTPPPGSGSTRDSDHHQGLPDAASLV 296

[Close]

BLAST of Spo13478.1 vs. ExPASy Swiss-Prot
Match: ATL33_ARATH (RING-H2 finger protein ATL33 OS=Arabidopsis thaliana GN=ATL33 PE=2 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.400e-14
Identity = 59/183 (32.24%), Postives = 94/183 (51.37%), Query Frame = 1


		  
Query: 2   MSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRRGSPADIDNFDQTNKVVEQE 61
           ++ + LI +++  + +P ++Y+ FF   C  +       R  S +D    D  +  V+  
Sbjct: 59  LTPLKLIFVVIAFVAVPALVYALFFNGPCSSSRRNSSSSRTSSSSD----DTPHATVDTP 118

Query: 62  EGESTSDKDKNNIELVIDVNSK-LGKDEECPICLAVFIQGDELRQLNSCKHLFHRSCIDK 121
               T+   ++  +   D +SK +G   EC +CL VF   DELRQL+ CKH FH  CI+ 
Sbjct: 119 PITETTVTSESGGKFHKDTHSKEIGN--ECSVCLMVFTDSDELRQLSECKHAFHVLCIET 178

Query: 122 WLSTHCNCPVCRAFI-VNNQSK----PIKEREH-NRVLVSREV---DRHDHW-QGLPDSA 174
           WL  H NCP+CR  + V  Q++    P+    + NR   +R V    R D W QGLPD++
Sbjct: 179 WLKDHPNCPICRTDVSVKQQTEAPNVPVNVNGNVNRSGGNRRVSATSRDDDWRQGLPDAS 235

[Close]

BLAST of Spo13478.1 vs. ExPASy Swiss-Prot
Match: ATL10_ARATH (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.200e-11
Identity = 30/57 (52.63%), Postives = 35/57 (61.40%), Query Frame = 1


		  
Query: 85  GKDEECPICLAVFIQGDELRQLNSCKHLFHRSCIDKWLSTHCNCPVCRAFIVNNQSK 142
           G DEEC ICL+ F+ G++LR L  C H FH  CIDKWL  H  CP CR  +V    K
Sbjct: 130 GLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQK 186

[Close]

BLAST of Spo13478.1 vs. ExPASy Swiss-Prot
Match: ATL51_ARATH (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.600e-11
Identity = 27/67 (40.30%), Postives = 42/67 (62.69%), Query Frame = 1


		  
Query: 86  KDEECPICLAVFIQGDELRQLNSCKHLFHRSCIDKWLSTHCNCPVCRAFIVNNQSKPIKE 145
           +  +C +CL+ F + + LR L  C H FH  CID WL +H NCP+CRAFIV + +  I +
Sbjct: 155 ESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVD 214

Query: 146 REHNRVL 153
             + +++
Sbjct: 215 LTNQQIV 221

[Close]

BLAST of Spo13478.1 vs. ExPASy Swiss-Prot
Match: ATL77_ARATH (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.700e-11
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 1


		  
Query: 85  GKDEECPICLAVFIQGDELRQLNSCKHLFHRSCIDKWLSTHCNCPVCRAFIVNNQSKPIK 144
           G  EEC ICL+ F+ G++LR L  C H FH  CIDKWL+ H  CP CR  +V+   K + 
Sbjct: 125 GVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCLVDTCQKVLS 184

Query: 145 E 146
           +
Sbjct: 185 D 185

[Close]

BLAST of Spo13478.1 vs. ExPASy Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.000e-11
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1


		  
Query: 89  ECPICLAVFIQGDELRQLNSCKHLFHRSCIDKWLSTHCNCPVCRAFI--VNNQSKPI 144
           +C +CL+ F + + LR L  C H FH  CID WL +H NCP+CRAF+  VNN +  +
Sbjct: 141 DCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASV 197

[Close]

BLAST of Spo13478.1 vs. TAIR (Arabidopsis)
Match: AT2G37580.1 (RING/U-box superfamily protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.900e-15
Identity = 59/183 (32.24%), Postives = 94/183 (51.37%), Query Frame = 1


		  
Query: 2   MSSVSLIVMLLIMIIIPTVLYSFFFITNCPLNLFGFLCGRRGSPADIDNFDQTNKVVEQE 61
           ++ + LI +++  + +P ++Y+ FF   C  +       R  S +D    D  +  V+  
Sbjct: 59  LTPLKLIFVVIAFVAVPALVYALFFNGPCSSSRRNSSSSRTSSSSD----DTPHATVDTP 118

Query: 62  EGESTSDKDKNNIELVIDVNSK-LGKDEECPICLAVFIQGDELRQLNSCKHLFHRSCIDK 121
               T+   ++  +   D +SK +G   EC +CL VF   DELRQL+ CKH FH  CI+ 
Sbjct: 119 PITETTVTSESGGKFHKDTHSKEIGN--ECSVCLMVFTDSDELRQLSECKHAFHVLCIET 178

Query: 122 WLSTHCNCPVCRAFI-VNNQSK----PIKEREH-NRVLVSREV---DRHDHW-QGLPDSA 174
           WL  H NCP+CR  + V  Q++    P+    + NR   +R V    R D W QGLPD++
Sbjct: 179 WLKDHPNCPICRTDVSVKQQTEAPNVPVNVNGNVNRSGGNRRVSATSRDDDWRQGLPDAS 235

[Close]

BLAST of Spo13478.1 vs. TAIR (Arabidopsis)
Match: AT1G49220.1 (RING/U-box superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 6.900e-13
Identity = 30/57 (52.63%), Postives = 35/57 (61.40%), Query Frame = 1


		  
Query: 85  GKDEECPICLAVFIQGDELRQLNSCKHLFHRSCIDKWLSTHCNCPVCRAFIVNNQSK 142
           G DEEC ICL+ F+ G++LR L  C H FH  CIDKWL  H  CP CR  +V    K
Sbjct: 130 GLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQK 186

[Close]

BLAST of Spo13478.1 vs. TAIR (Arabidopsis)
Match: AT3G03550.1 (RING/U-box superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 9.000e-13
Identity = 27/67 (40.30%), Postives = 42/67 (62.69%), Query Frame = 1


		  
Query: 86  KDEECPICLAVFIQGDELRQLNSCKHLFHRSCIDKWLSTHCNCPVCRAFIVNNQSKPIKE 145
           +  +C +CL+ F + + LR L  C H FH  CID WL +H NCP+CRAFIV + +  I +
Sbjct: 155 ESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVD 214

Query: 146 REHNRVL 153
             + +++
Sbjct: 215 LTNQQIV 221

[Close]

BLAST of Spo13478.1 vs. TAIR (Arabidopsis)
Match: AT3G18773.1 (RING/U-box superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.500e-12
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 1


		  
Query: 85  GKDEECPICLAVFIQGDELRQLNSCKHLFHRSCIDKWLSTHCNCPVCRAFIVNNQSKPIK 144
           G  EEC ICL+ F+ G++LR L  C H FH  CIDKWL+ H  CP CR  +V+   K + 
Sbjct: 125 GVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCLVDTCQKVLS 184

Query: 145 E 146
           +
Sbjct: 185 D 185

[Close]

BLAST of Spo13478.1 vs. TAIR (Arabidopsis)
Match: AT5G17600.1 (RING/U-box superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 3.400e-12
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1


		  
Query: 89  ECPICLAVFIQGDELRQLNSCKHLFHRSCIDKWLSTHCNCPVCRAFI--VNNQSKPI 144
           +C +CL+ F + + LR L  C H FH  CID WL +H NCP+CRAF+  VNN +  +
Sbjct: 141 DCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASV 197

The following BLAST results are available for this feature:

BLAST of Spo13478.1 vs. NCBI nr
BLAST of Spo13478.1 vs. UniProtKB/TrEMBL
BLAST of Spo13478.1 vs. ExPASy Swiss-Prot
BLAST of Spo13478.1 vs. TAIR (Arabidopsis)

BLAST of Spo13478.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902073772\|gb\|KNA02964.1\|	1.7e-93	100.	hypothetical protein SOVF_2135...	[more]
gi\|731364138\|ref\|XP_010693811.1\|	1.8e-63	71.2	PREDICTED: RING-H2 finger prot...	[more]
gi\|559148730\|gb\|AHB08887.1\|	1.7e-53	63.4	RING-H2 finger protein ATL2J [...	[more]
gi\|255573615\|ref\|XP_002527730.1\|	2.9e-21	36.9	PREDICTED: RING-H2 finger prot...	[more]
gi\|697098801\|ref\|XP_009628564.1\|	8.4e-21	35.5	PREDICTED: RING-H2 finger prot...	[more]

BLAST of Spo13478.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9Q748_SPIOL	1.2e-93	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BFH4_BETVU	1.2e-63	71.2	Uncharacterized protein OS=Bet...	[more]
V5Q0U5_9CARY	1.2e-53	63.4	RING-H2 finger protein ATL2J O...	[more]
B9SP11_RICCO	2.0e-21	36.9	RING-H2 finger protein ATL2J, ...	[more]
A0A0D2TM30_GOSRA	2.1e-18	37.0	Uncharacterized protein OS=Gos...	[more]

BLAST of Spo13478.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
ATL33_ARATH	3.4e-14	32.2	RING-H2 finger protein ATL33 O...	[more]
ATL10_ARATH	1.2e-11	52.6	RING-H2 finger protein ATL10 O...	[more]
ATL51_ARATH	1.6e-11	40.3	RING-H2 finger protein ATL51 O...	[more]
ATL77_ARATH	2.7e-11	47.5	RING-H2 finger protein ATL77 O...	[more]
ATL52_ARATH	6.0e-11	47.3	RING-H2 finger protein ATL52 O...	[more]

BLAST of Spo13478.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT2G37580.1	1.9e-15	32.2	RING/U-box superfamily protein	[more]
AT1G49220.1	6.9e-13	52.6	RING/U-box superfamily protein	[more]
AT3G03550.1	9.0e-13	40.3	RING/U-box superfamily protein	[more]
AT3G18773.1	1.5e-12	47.5	RING/U-box superfamily protein	[more]
AT5G17600.1	3.4e-12	47.3	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 89..132 score: 1.8
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 90..131 score: 6.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 90..132 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 86..133 score: 5.3
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 1..157 score: 1.0
None	No IPR available	PANTHER	PTHR14155:SF180	RING/U-BOX DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..157 score: 1.0
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 75..138 score: 2.15

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding