Spo13771.1 (mRNA)

Overview
NameSpo13771.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01481 : 88508 .. 91977 (+)
Sequence length1224
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGTGTTACATCTGCTCTATGCTCGGTTGTTGTGGAAGCTTTGGCTCTGGAGCTTGGGTATGTCTGGTGCTGCTTCTCATGAAAATTATATCAGTGAGTTCTGGAGTTTGTATGTTTATTTTCAGTAGATTATGTTGAGAATTACTATAAGTAAGCTCTTAACGTATTAAACTCGTTTTTTTTTCTTAGGAGAATTTCCCAAGCTACTGGAGCTCCATGTAAGTTTCCTCTTTATATGCAACCCCTATCTATCTTCTTGTTTTATGAGTTCTTGTTAGCTTGTATGCCGCAAGTCTCTTGGTTATATGTCAAAACTTCCGTGCTCTTATCCTTTGCTGATCTACCACATGTTAGTACGTTAACTACGTCTATGAGATCGCACAATGGTAGTACTGAACTTAATTGATGATTAAGAATACTTTGTAGCCGTTGATATCTTCTGTTATTATTCCCGGAAATAAATAGCAGATGTAAGCTATATATGCAGCTTCCCGTATGCTAGTGGATGAAAGTGCTCCTTTTTTTAGCATCTTCGTTGACATGAACACTTCCATTGAAATATTTAGCATGACTACTCAAATTATTGTTTGGCCTGTGACACTTGAGGCTAGCTTTTGATTGTTCTGTAGGAGGTTAACATTGTTCTAGCAAGACTGGCCTTAGACAGAGAGATTGGGTAGCTTTTTTGTATTTCTTTGAATTCCATCTAACTGTGCAATATTTCCTCCGTTGAAGGGTAAAATTTAGAAGAAAATACAAAAGAAAAAATGAATGTTTTGAAATCAAAGGGAGAAAAAATAATATTTATTCTTACCCTGCCGGCGTATTCCTTTCATAAATGAGTAATGACCGCTATAGAGTCATTATGTTACCTTTGGTCAGAATCACCATTTTTTGTTTATTGACGTTTTTACCTATGTTACTTTACTCTTCATTTCACCTCAAGGACGGATCCTAGACACTCGGCCATGGGTACGACTAGACCTGTCAAACGGGTCGGGTTGTAAAAAATTATTTTCGGGTTGAATTGGGTGGGTCACTTTCGGGTTTGAGTTTACAAATGCTTGTTCAAAACCCTGAACTTTCGGGTTCGGGTCGACCCAACGGGTTGAGAGATTTTAAAACGCGCATTATATTTTCATTAATTTAGGTGATAAATATACAAAATTTGGATACAAATTAACAAATTTTCCTACCCAAGTCTATATTTAGTCAAATTCAACCTTAAAATGGCGTATATTCAAATTAAAATCATATTACACACAACAATAGTAAAAACACCGTGTTTATTATGCTTAAATTTTCTCATAATTTCATTTATTACTATAAATACACTGATTTTCAATCGGTCGGGTCCAAAACGGGTTCGGTTGGGTTTTGACCCAATACTTTTCGGGTTGCTTGGGTTCGGATAAAATCGGGTTACGGGTCACAAAATCTTGTTCAACACTCAGTATTTACGAGTCGGTTTTCGGGTCGGGTCGATTTTTTACAGGTCTAGTACGGACACTTCATTTTCGACCGAAGCGCTGATTTTTTTTCACAAAATAGCCGAGTCGAACACTTGGCCCGCATGGGTCCCCGAGTCTGAGTAACGTAGCTTTTTACTATAACAGTATTTAGTGGTAGTAAGGCAATTAAAATCAGTAATAGGTATATTTTCTTTGAGGTGAATTCAACTTTGAGCTTTACTATCTTTCAGTTTCAGACTTTCAGCTATTGATTTTTTGTATATGAATATATTGCATTAATAGAGACCTCGTTCTATTTGTTTTAGATGTAAATAACTGTAGCCTGTAGGTTAGTGGATGATCGTGGCCTTAGTTTTAAGAAGCATACCTTAGGTGCAGAGGAGAGCCTAGAGCGCTGTTATACCTCCACCAAATAAGAGTGAGAGGAAAGAATGAATGATCCTCGGTTTCTCACTACAGAGAAAGAGATTGAGTGAAGAGAGAATCATAGCTGTGCATATAGCTATGAGCACAGACTTGGGACTTCTGTTTTCATGTTCAAATTCTTGCTGTCCGAAACCCTGGTGGAATTTTAGGAACTTAGTTTTATTTGGGATTTGCAATAAATCCAGACTGGATCATTGTAACTAAGGCTGGCAATCATGTGCCTATAAATAGTTGACCGATGTGAAAAAAAGAAAAGGCCTGGTTCAGGATTCATGAGCTTTTAATGGTGCAGGGACATAATTTTCACAGCTTCCTGTCTTATGAGGTCTATTCGTTCTTCCTCCCTTCCCCTTCTTCAGCAACTAACAATCTCAAGGGCTTGCTTCGATTAGGGGCATGTATTAAGTGGGTAATAAAATAAAATATTATGTTTGTAGTTTTAATAAATGTGTATCATGTGGTTCTCATAGGAGATGAGCACTAGATCCAGCTATTTCTTGTCATGTTATATATTGGATAACCTATATATCAAGGAGGTGACAAAGCCAAAACCACTCTGATCACTGTTCAAGCAAATTTTGGAGCAAGTGGTGGAAAATGAAGATATATGGCTGAAGTGGAGTATCTTTCTGCGGAAAATTCTACACAGTGCCCTCCCTGTTAGAGAATGCCTGAATCAAAGAGGTATGAAAAGTGTGAAATATCAATGAGAATATGGAAGGCAAGTACTCTGGAGATTGGAATCGGTATTAAACTGAGACATCTTGCTACTTTTGACGATGAAGATGGTAGCGACTACACGAGAACTGTGGGAGTAACAACAGTCTCGTGTTATACAGTCTCGGAGCTTTTTATGTGTTATCCAGTAGCTTATCGACCATCAATTGCATTAAATCAAAATTTATGGTTCGGAATAGTGTTTTTGAATTAGGGCTTCAGATTGGCAAAAACCTGGATGCAATTAAATTAGGGATTTTCCTTGAAATTATTTATAAAGCCTAGTTAACTTTAAAATTAAGGAAATTTGGCTTTTCATTTATAACATTGGAGTCGGATATGCTCATAAACCCCAATAGTGGTCGGGGCAGGCTGTGCTTGTGGATCTCCTTGCCTAAGTTCTACAGTTTAGCACAAGGTGTGCTTTGTAAAATTAAAGCTAATGTACGGAAAAGAAAAATGCAGGGAAGGGAAAGGAAAGGGAGGAAACTACCTTGTTTTGATAATAGGTTGGGCGAAGGAAAAGGAGGGAGATGGAGGGATCCGTTTTCCTTCCATATTTAATGAACACCATCCCTCCAAAGTATGAGTGATTTTGGAGAACATGAAGCTCACTTTCCCCTCTCCCTTCTCCTCTTTCCCTTCCATTTCCTTTATTTTGTTGTCCAAATATTTTTTTCATTTCCTTTGTTCGTTTTATTGTGGGAAACAATTTTCTCAAATGTCAAGTGTTTGCTAAGGTAAGTAGGTAATGTAGAGGTTATTGTTTTATCCCAGAACAAAGTTTCTACTTAAGGTGAGTTAATTCTCAGAAGTTACAATTTTACTTTTGGTCACTTTTACATCTAATC

mRNA sequence

ATGAATGTGTTACATCTGCTCTATGCTCGGTTGTTGTGGAAGCTTTGGCTCTGGAGCTTGGGTATGTCTGGTGCTGCTTCTCATGAAAATTATATCAGAGAATTTCCCAAGCTACTGGAGCTCCATGAGATGAGCACTAGATCCAGCTATTTCTTGTCATGTTATATATTGGATAACCTATATATCAAGGAGGTGACAAAGCCAAAACCACTCTGATCACTGTTCAAGCAAATTTTGGAGCAAGTGGTGGAAAATGAAGATATATGGCTGAAGTGGAGTATCTTTCTGCGGAAAATTCTACACAGTGCCCTCCCTGTTAGAGAATGCCTGAATCAAAGAGGTATGAAAAGTGTGAAATATCAATGAGAATATGGAAGGCAAGTACTCTGGAGATTGGAATCGGTATTAAACTGAGACATCTTGCTACTTTTGACGATGAAGATGGTAGCGACTACACGAGAACTGTGGGAGTAACAACAGTCTCGTGTTATACAGTCTCGGAGCTTTTTATGTGTTATCCAGTAGCTTATCGACCATCAATTGCATTAAATCAAAATTTATGGTTCGGAATAGTGTTTTTGAATTAGGGCTTCAGATTGGCAAAAACCTGGATGCAATTAAATTAGGGATTTTCCTTGAAATTATTTATAAAGCCTAGTTAACTTTAAAATTAAGGAAATTTGGCTTTTCATTTATAACATTGGAGTCGGATATGCTCATAAACCCCAATAGTGGTCGGGGCAGGCTGTGCTTGTGGATCTCCTTGCCTAAGTTCTACAGTTTAGCACAAGGTGTGCTTTGTAAAATTAAAGCTAATGTACGGAAAAGAAAAATGCAGGGAAGGGAAAGGAAAGGGAGGAAACTACCTTGTTTTGATAATAGGTTGGGCGAAGGAAAAGGAGGGAGATGGAGGGATCCGTTTTCCTTCCATATTTAATGAACACCATCCCTCCAAAGTATGAGTGATTTTGGAGAACATGAAGCTCACTTTCCCCTCTCCCTTCTCCTCTTTCCCTTCCATTTCCTTTATTTTGTTGTCCAAATATTTTTTTCATTTCCTTTGTTCGTTTTATTGTGGGAAACAATTTTCTCAAATGTCAAGTGTTTGCTAAGGTAAGTAGGTAATGTAGAGGTTATTGTTTTATCCCAGAACAAAGTTTCTACTTAAGGTGAGTTAATTCTCAGAAGTTACAATTTTACTTTTGGTCACTTTTACATCTAATC

Coding sequence (CDS)

ATGAATGTGTTACATCTGCTCTATGCTCGGTTGTTGTGGAAGCTTTGGCTCTGGAGCTTGGGTATGTCTGGTGCTGCTTCTCATGAAAATTATATCAGAGAATTTCCCAAGCTACTGGAGCTCCATGAGATGAGCACTAGATCCAGCTATTTCTTGTCATGTTATATATTGGATAACCTATATATCAAGGAGGTGACAAAGCCAAAACCACTCTGA

Protein sequence

MNVLHLLYARLLWKLWLWSLGMSGAASHENYIREFPKLLELHEMSTRSSYFLSCYILDNLYIKEVTKPKPL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo13771Spo13771gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo13771.1Spo13771.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo13771.1.exon.1Spo13771.1.exon.1exon
Spo13771.1.exon.2Spo13771.1.exon.2exon
Spo13771.1.exon.3Spo13771.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo13771.1.CDS.1Spo13771.1.CDS.1CDS
Spo13771.1.CDS.2Spo13771.1.CDS.2CDS
Spo13771.1.CDS.3Spo13771.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo13771.1.utr3p.1Spo13771.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo13771.1 vs. NCBI nr
Match: gi|902237728|gb|KNA24912.1| (hypothetical protein SOVF_011200 [Spinacia oleracea])

HSP 1 Score: 67.4 bits (163), Expect = 1.200e-8
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 1 

		  

Query: 12   LWKLWLWSLGMSGAASHENYIREFPKLLELHE--MSTRSSYFLSCYI 57
            L KLWLWSLGMSGAASHENYIREFPKLLELH   +   + Y  SC++
Sbjct: 1154 LEKLWLWSLGMSGAASHENYIREFPKLLELHVSFLFICNPYLSSCFM 1200
[Close]
BLAST of Spo13771.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S1B0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_011200 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.000e-9
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 1 

		  

Query: 12   LWKLWLWSLGMSGAASHENYIREFPKLLELHE--MSTRSSYFLSCYI 57
            L KLWLWSLGMSGAASHENYIREFPKLLELH   +   + Y  SC++
Sbjct: 1154 LEKLWLWSLGMSGAASHENYIREFPKLLELHVSFLFICNPYLSSCFM 1200
The following BLAST results are available for this feature:
BLAST of Spo13771.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902237728|gb|KNA24912.1|1.2e-870.2hypothetical protein SOVF_0112... [more]
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BLAST of Spo13771.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9S1B0_SPIOL8.0e-970.2Uncharacterized protein OS=Spi... [more]
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BLAST of Spo13771.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo13771.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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