Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTAATTTGAGTGACAATTTTTTGCAAATTTGTCCTTCAATTTTTGGGAGTGTGTTTTGTGGCTGTCGTTAGATCGTTCACCTCACTCCGTCAGTCAGTCAGTCCTTCCTCTAAACTCACTCTCTCTCCTCCCTTCTCTTCCCATGAACACCTTCAAGCTCTAGGGTTTTCTCCCCCAAAATCTAGGGTTTTTGCGCATTACATTTTCTCCTCAAATTCCCCCATTTTATTCTCCAAGAATCAATCTTTCTCTCTCTACTCCCGATTTCTCTCCTAATATCTCTCCAATGGCGAAGACTCGCCCCGGAAAGCGGGACCTTGATTCGTATACCATTAAAGGCACCAACAAGGTCGTCAGAGGTAAGAACCACAGTTTCCAAATCGAATAATTTCTGGGTTTCCGATGTTTCCAATTGATTGATTGCTGGGTTAATTTCAATTCCCTGAATTTTCGTTTTTTTTTTTTTTTTTTTTAAATTTTCAATTTTTAGTTGGAGATTGTGTTTTGATGAGACCTGCTGATGTGGGCAAGCCACCATATGTCGCTCGTGTTGAAAAGATTGAAGCTGATAGCAGGAACAATGTGAAAGTTAAGGTTAGATGGTATTATAGACCTGAAGAGTCCATGGGAGGAAGAAGACAGTTTCATGGGGCTAAAGAATTGTTCTTGTCTGACCATCATGATGTACAAAGTGCTCATACAATTGAAGGGAAGTGTACTGTTCATTCATTCAAGAACTACACTAAGCTTGAGAATGTTGGGGCTGATGATTACTTCTGTAGATTTGAGTATAAGGCTGCCACTGGTGCTTTTACTCCTGACCGTGTTGCTGTGTGAGTTTGACTCATCACTTAGCTTATTTTTTGATAGGGAGGAGGATTGGGTTTTGTGTTCTTTGATGTGGATTTTGATTTGTTTTTGTTGGGTGTTTGTCTGTTTTGGTTGTTTTTTGTGTTTTGTAGGTATTGCAAGTGTGAAATGCCGTATAATCCCGATGATCTTATGGTGCAATGTGAGGGCTGTAAGGACTGGTAATCTCCCATCTCTTGTTTAATTGATTGTTATAGTTTCAAAGCTCTTTGTTTTTCAGTGTATTAGCTGGTTTTCTAGGGATTGTGTTTGTATTTTCGGGTGTTTTGCTGTTTCCTAGTTAATTGAGCAGATTTTTTTAAAAGTGCTTGGCAATATTTTCTTAGAAGCTTGGCAGTGTTTACTTACAGAATGCTTTATGCGATAAAACGAGAGACACATGGCTCAAGTCTTGATCTTATTGTTTATGGTGATATAGTGATAGATTGTTTAGTGTGGCTACTATCTTTGTTGTGCCTGATATTGTATTCACAGAAGTACAATCCATATGCTGTCATTGGAGAGTTTTAGCTCGTTTTCTAGGGCTATTTTTGTATTATTTGTATATAGGGATGTCTTGTTGTTTCATAGATAATTAAGCGGTTTTGTTCAAGAAATGATTGGCGATTTTCACTTAGAGAATACTTTATTTGGTGAAATGAGACATGACTCAAGTCTTGATTTAATATGTATAGTGACTGACTGGCTACTACTATCTTTGTCATGCCTGATATGGTTATTCGATGCTTCATTATTCACAGAAGTACTACTCATATGCTATCTTTGGAGTTTTGGATTTGACGTGATGCTTGGAGACTCCAAATTCGACCAAATAGCCTACAGTATTCCCTCAAAATTGCCGGATGTAACTCTTTGGAGACTTTGGTTTGGTATACATGATGTCTATGCTCTGCCACCCCAGCTTTGAGTTACACTGGCCCAATTAAATTTTTTTTCCTCAATCTTTCTAGGCCATTAGAGTAGCTTGATTTTTGCTAGCAAATCTTGGCTTTTCAAGCTTAAGTATCATGGTATTAGCACAGGCACTAGTTTTATAAAAGATTGGTCGTCTGTTTCTCCGAATTAAGATCCTTTTCATTGTGGTTAGGGGTCACCTCTTTCAGTTTGCTATAATAATAGTTGTTTAAGGAAAATGTCAGGTGCATTTGAGGATGAAATTCGCTGTCATTCTAATGATACTAAGATTCATGCAGGTTCCATCCTTCTTGCATGGGCATGACAATTGAAGAAGCAAAGAAGTTGGATCATTTTTTATGCTCTGATTGTGTGGCTGAAGATGATCCTAAGAAAGGGGGAAGCACATTCTCTACATCACCACTGGCTGATGGCAAGGTGAAAAGTTGTTCCTTATGATGTTAGAGTTGCATATTGCTTGTGTTTTAGTCTTTGCATGCATGAATAGCTCACTTATGTAGGGTAACCTGTCCTGGTGTAGGAGAATTCTACTTCTCATGTTCCCGTTGTGGCAATTGTAATCATCATTATTGATGAGTGATTTTTTGGTTTGTTGCTGAGTTAAAATATTGCGCTTGACCTTTGGCACATCTTTCTATCTCTAGTTGATGAAGAAGTTGTCTTCTTGTTTGACTTTTCTCGTTATTGATGGAAATATTATTGGTTGCTATGTTCATGTAAGAAACAAAGTATTTTCATCGTTAAAGAGTGCAAGGTTCTATCTGCAAGTTCTTTTGTCGTACAAGTTTGTTTGCTTCTAAATAGACACGTTACCATCATCATCGCCAATTGTTGTCATTGTTTGTATGCTTAGATTATTTTATTAATCTTGATGTGTGCGCGTTATAGTACAATTAAGTGTGGGGTTCAGAGATTATTCTGTTTGCCTGCAATTGTTTTGATGCAGCAGAGCCCCTTTTGCTAAAACACCTGTGATTACTGGATAAGGCACATTTGACCTGCCACACTCATGATTACTGGATAAGGCACATTTGGCCTGCCACATTTTGATTACTGACTGGATAAGGCCGCATCAATCAGATGTAGTCCACTCTGTTTCGTTATTGATACTGCTTACGAACAGATGTCCAATTTTTCCCGTCCCCTGAAGAAAAAGTGGTTGTTCTTACTCCTCGCATCATCTAGTCTGCAGAAAATATTTGAACACATATTCCAAGGTCATTTTCTGTGTGGATTACTGGCATTTTCTCCACATTTTTAGGTCTTTGATATTTTTTTGTTGGTGCATCAACCTATTCTTTAATTTTTGTATAGGATGGATTATAACAATGTAGTCCGAATCTGTTGACCTCTGTTAAAAGAATTCCTTTTTTATTTATTATTAATGTCGTATGTGTACCTACTATTATGTGATTCATAGATTTCATATTGCGAAATTCTTGTTTTGCAGCCTGATAACAAGCGGAGAAAGAGATAAGAGGTGATTTACATACCTGGAGTTTGGGAGAGCTTTGAAGGTTACCTTGTAGAACTAACTGTGTTGTGAGAGTTGTATTGGTCAGCTGTGAACCCTTAAATGCCATGCTTGTGCTCAAAACTAGGCTTGGGGCTGTAATTTCCTGTGTGTTTGTGCCCCTTGAGCCGATGCATGTATGACTTATCTGTAATTTAAAATCCTGTGCAGAAAGATAATTCAGTTATAGGCTTGTTGTAGCCATGGTTGGATTTGATCACTTTCGGTGCCCAGATTTAAAGAATGGCTCAAGTTCGGCATTAGTTCAGTAAGGTAAAGTTTTCTGTATTTATGCTGAAGCCTGCTGGTCTTGCCTGGAAGGTAGAAATTTAGGTATAAATGTAGTAAATGAAGCTCCTCTCCATTTTAGTTAGTAATCTGGGTCGAAGTCACAGGACAAGCAAAGTTGAAGAAGATTGGAAGGAAAACATGTGAAATTATTTAGTTTTGTAATTGGATATTTCTTTCTGAATATATCAATTATGTGATTCCTTCCTCCTGCGCGAGAGTGTCAAAATGAGTTTCTGATTGAAACAATATTCCGGTCATTTCCCTTCGTTTTTTTAGTATTCTCTCTTCGAAACATAAATCATAATTAAGAAAAACAACCCAAATTCTAATGAAGGATGAATGATGCCTTCTTGATGGCTAAGTTATACTTTATCTTTTTAATTTGGTTTCGTTTGTTT ATTAATTTGAGTGACAATTTTTTGCAAATTTGTCCTTCAATTTTTGGGAGTGTGTTTTGTGGCTGTCGTTAGATCGTTCACCTCACTCCGTCAGTCAGTCAGTCCTTCCTCTAAACTCACTCTCTCTCCTCCCTTCTCTTCCCATGAACACCTTCAAGCTCTAGGGTTTTCTCCCCCAAAATCTAGGGTTTTTGCGCATTACATTTTCTCCTCAAATTCCCCCATTTTATTCTCCAAGAATCAATCTTTCTCTCTCTACTCCCGATTTCTCTCCTAATATCTCTCCAATGGCGAAGACTCGCCCCGGAAAGCGGGACCTTGATTCGTATACCATTAAAGGCACCAACAAGGTCGTCAGAGTTGGAGATTGTGTTTTGATGAGACCTGCTGATGTGGGCAAGCCACCATATGTCGCTCGTGTTGAAAAGATTGAAGCTGATAGCAGGAACAATGTGAAAGTTAAGGTTAGATGGTATTATAGACCTGAAGAGTCCATGGGAGGAAGAAGACAGTTTCATGGGGCTAAAGAATTGTTCTTGTCTGACCATCATGATGTACAAAGTGCTCATACAATTGAAGGGAAGTGTACTGTTCATTCATTCAAGAACTACACTAAGCTTGAGAATGTTGGGGCTGATGATTACTTCTGTAGATTTGAGTATAAGGCTGCCACTGGTGCTTTTACTCCTGACCGTGTTGCTGTGTATTGCAAGTGTGAAATGCCGTATAATCCCGATGATCTTATGGTGCAATGTGAGGGCTGTAAGGACTGGTTCCATCCTTCTTGCATGGGCATGACAATTGAAGAAGCAAAGAAGTTGGATCATTTTTTATGCTCTGATTGTGTGGCTGAAGATGATCCTAAGAAAGGGGGAAGCACATTCTCTACATCACCACTGGCTGATGGCAAGCCTGATAACAAGCGGAGAAAGAGATAAGAGGTGATTTACATACCTGGAGTTTGGGAGAGCTTTGAAGAAAGATAATTCAGTTATAGGCTTGTTGTAGCCATGGTTGGATTTGATCACTTTCGGTGCCCAGATTTAAAGAATGGCTCAAGTTCGGCATTAGTTCAGTAAGGTAAAGTTTTCTGTATTTATGCTGAAGCCTGCTGGTCTTGCCTGGAAGGTAGAAATTTAGGTATAAATGTAGTAAATGAAGCTCCTCTCCATTTTAGTTAGTAATCTGGGTCGAAGTCACAGGACAAGCAAAGTTGAAGAAGATTGGAAGGAAAACATGTGAAATTATTTAGTTTTGTAATTGGATATTTCTTTCTGAATATATCAATTATGTGATTCCTTCCTCCTGCGCGAGAGTGTCAAAATGAGTTTCTGATTGAAACAATATTCCGGTCATTTCCCTTCGTTTTTTTAGTATTCTCTCTTCGAAACATAAATCATAATTAAGAAAAACAACCCAAATTCTAATGAAGGATGAATGATGCCTTCTTGATGGCTAAGTTATACTTTATCTTTTTAATTTGGTTTCGTTTGTTT ATGGCGAAGACTCGCCCCGGAAAGCGGGACCTTGATTCGTATACCATTAAAGGCACCAACAAGGTCGTCAGAGTTGGAGATTGTGTTTTGATGAGACCTGCTGATGTGGGCAAGCCACCATATGTCGCTCGTGTTGAAAAGATTGAAGCTGATAGCAGGAACAATGTGAAAGTTAAGGTTAGATGGTATTATAGACCTGAAGAGTCCATGGGAGGAAGAAGACAGTTTCATGGGGCTAAAGAATTGTTCTTGTCTGACCATCATGATGTACAAAGTGCTCATACAATTGAAGGGAAGTGTACTGTTCATTCATTCAAGAACTACACTAAGCTTGAGAATGTTGGGGCTGATGATTACTTCTGTAGATTTGAGTATAAGGCTGCCACTGGTGCTTTTACTCCTGACCGTGTTGCTGTGTATTGCAAGTGTGAAATGCCGTATAATCCCGATGATCTTATGGTGCAATGTGAGGGCTGTAAGGACTGGTTCCATCCTTCTTGCATGGGCATGACAATTGAAGAAGCAAAGAAGTTGGATCATTTTTTATGCTCTGATTGTGTGGCTGAAGATGATCCTAAGAAAGGGGGAAGCACATTCTCTACATCACCACTGGCTGATGGCAAGCCTGATAACAAGCGGAGAAAGAGATAA MAKTRPGKRDLDSYTIKGTNKVVRVGDCVLMRPADVGKPPYVARVEKIEADSRNNVKVKVRWYYRPEESMGGRRQFHGAKELFLSDHHDVQSAHTIEGKCTVHSFKNYTKLENVGADDYFCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCVAEDDPKKGGSTFSTSPLADGKPDNKRRKR Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo13774.1 vs. NCBI nr
Match: gi|902087106|gb|KNA03246.1| (hypothetical protein SOVF_211050 [Spinacia oleracea]) HSP 1 Score: 461.8 bits (1187), Expect = 6.400e-127 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1
BLAST of Spo13774.1 vs. NCBI nr
Match: gi|731350952|ref|XP_010686778.1| (PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 458.8 bits (1179), Expect = 5.400e-126 Identity = 214/216 (99.07%), Postives = 215/216 (99.54%), Query Frame = 1
BLAST of Spo13774.1 vs. NCBI nr
Match: gi|593262004|ref|XP_007133181.1| (hypothetical protein PHAVU_011G158300g [Phaseolus vulgaris]) HSP 1 Score: 406.4 bits (1043), Expect = 3.200e-110 Identity = 184/216 (85.19%), Postives = 204/216 (94.44%), Query Frame = 1
BLAST of Spo13774.1 vs. NCBI nr
Match: gi|950937095|ref|XP_014519991.1| (PREDICTED: protein polybromo-1-like [Vigna radiata var. radiata]) HSP 1 Score: 406.0 bits (1042), Expect = 4.200e-110 Identity = 184/216 (85.19%), Postives = 204/216 (94.44%), Query Frame = 1
BLAST of Spo13774.1 vs. NCBI nr
Match: gi|1012212754|ref|XP_015933616.1| (PREDICTED: chromatin remodeling protein EBS isoform X2 [Arachis duranensis]) HSP 1 Score: 406.0 bits (1042), Expect = 4.200e-110 Identity = 184/216 (85.19%), Postives = 204/216 (94.44%), Query Frame = 1
BLAST of Spo13774.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q9Q8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_211050 PE=4 SV=1) HSP 1 Score: 461.8 bits (1187), Expect = 4.400e-127 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1
BLAST of Spo13774.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BSG5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g185500 PE=4 SV=1) HSP 1 Score: 458.8 bits (1179), Expect = 3.800e-126 Identity = 214/216 (99.07%), Postives = 215/216 (99.54%), Query Frame = 1
BLAST of Spo13774.1 vs. UniProtKB/TrEMBL
Match: V7AIX2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G158300g PE=4 SV=1) HSP 1 Score: 406.4 bits (1043), Expect = 2.200e-110 Identity = 184/216 (85.19%), Postives = 204/216 (94.44%), Query Frame = 1
BLAST of Spo13774.1 vs. UniProtKB/TrEMBL
Match: A0A0S3S9S4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G050700 PE=4 SV=1) HSP 1 Score: 406.0 bits (1042), Expect = 2.900e-110 Identity = 184/216 (85.19%), Postives = 204/216 (94.44%), Query Frame = 1
BLAST of Spo13774.1 vs. UniProtKB/TrEMBL
Match: A0A0S3S9M9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G049600 PE=4 SV=1) HSP 1 Score: 402.9 bits (1034), Expect = 2.500e-109 Identity = 183/216 (84.72%), Postives = 203/216 (93.98%), Query Frame = 1
BLAST of Spo13774.1 vs. ExPASy Swiss-Prot
Match: EBS_ARATH (Chromatin remodeling protein EBS OS=Arabidopsis thaliana GN=EBS PE=1 SV=1) HSP 1 Score: 378.3 bits (970), Expect = 5.800e-104 Identity = 173/216 (80.09%), Postives = 194/216 (89.81%), Query Frame = 1
BLAST of Spo13774.1 vs. ExPASy Swiss-Prot
Match: SHL_ARATH (Chromatin remodeling protein SHL OS=Arabidopsis thaliana GN=SHL PE=1 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 8.700e-76 Identity = 135/214 (63.08%), Postives = 162/214 (75.70%), Query Frame = 1
BLAST of Spo13774.1 vs. ExPASy Swiss-Prot
Match: EBSL_ARATH (Chromatin remodeling protein At4g04260 OS=Arabidopsis thaliana GN=At4g04260 PE=3 SV=2) HSP 1 Score: 271.9 bits (694), Expect = 5.900e-72 Identity = 143/231 (61.90%), Postives = 167/231 (72.29%), Query Frame = 1
BLAST of Spo13774.1 vs. ExPASy Swiss-Prot
Match: BAHC1_HUMAN (BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=BAHCC1 PE=1 SV=3) HSP 1 Score: 72.8 bits (177), Expect = 5.200e-12 Identity = 42/127 (33.07%), Postives = 61/127 (48.03%), Query Frame = 1
BLAST of Spo13774.1 vs. ExPASy Swiss-Prot
Match: BAHC1_MOUSE (BAH and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Bahcc1 PE=2 SV=2) HSP 1 Score: 72.0 bits (175), Expect = 8.900e-12 Identity = 42/127 (33.07%), Postives = 60/127 (47.24%), Query Frame = 1
BLAST of Spo13774.1 vs. TAIR (Arabidopsis)
Match: AT4G22140.1 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein) HSP 1 Score: 378.3 bits (970), Expect = 3.300e-105 Identity = 173/216 (80.09%), Postives = 194/216 (89.81%), Query Frame = 1
BLAST of Spo13774.1 vs. TAIR (Arabidopsis)
Match: AT4G39100.1 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein) HSP 1 Score: 284.6 bits (727), Expect = 4.900e-77 Identity = 135/214 (63.08%), Postives = 162/214 (75.70%), Query Frame = 1
BLAST of Spo13774.1 vs. TAIR (Arabidopsis)
Match: AT4G04260.1 (Bromo-adjacent homology (BAH) domain-containing protein) HSP 1 Score: 256.9 bits (655), Expect = 1.100e-68 Identity = 126/184 (68.48%), Postives = 148/184 (80.43%), Query Frame = 1
BLAST of Spo13774.1 vs. TAIR (Arabidopsis)
Match: AT4G23120.1 (Bromo-adjacent homology (BAH) domain-containing protein) HSP 1 Score: 54.3 bits (129), Expect = 1.100e-7 Identity = 32/91 (35.16%), Postives = 51/91 (56.04%), Query Frame = 1
BLAST of Spo13774.1 vs. TAIR (Arabidopsis)
Match: AT4G14700.1 (origin recognition complex 1) HSP 1 Score: 53.1 bits (126), Expect = 2.400e-7 Identity = 28/93 (30.11%), Postives = 50/93 (53.76%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13774.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo13774.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo13774.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo13774.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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