Spo13787.1 (mRNA) | SpinachBase

Overview


Name	Spo13787.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Coatomer subunit beta (Beta-coat protein)
Location	SpoScf_02635 : 29357 .. 32139 (+)
Sequence length	817

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGAAGATTTTGTTCAGGTTTAAAGAATCTATCAGGGGAAATGAAAAAGATTTTGATTTTATTCCATGTAGCTTTACTATTTAACTATTTGTAACTTATTGTGGAGGAACTTGTATTAATATCTATCTCTAGAGTTATTCATAATGTATATTGTACTCGTATTAATTTGGCTTCTATTCCCTATTCAAGTGTACCAGATAGACGGAAACTAAATCTGACAGAAGTCCACTATTTTTGAAGGCTCAACTGGAATCTGAAACTCTAGGTAATTGACTTATCTGGTCGACTTTTTCAAACTTAAGTTTTTGCTTATGCTTTCTTCATGAATATCACCGTGTCAGAACGATGGAAACTAAGTCTGACACAAAGGTTAACATCTTTCTTATGTGATGCAGTATTGTCTTCTGTTTTTGCTGTACACTTGTTTTAAGTTTTAACTTATTGTGTGTCATGGTTTGCGTTCTTGTTTCTATGGTTACATAATATGGTTTTATCTTTTCTATTCACAAATCTTATTCATATCTGTAACTCTGTATGATAAATAACACAGGAAACTGGATTTATGACAGAAACTTCGCGATTAGTTTTACACCGCCACTGAGGAAGGAGAGGGCCAAGAGGCTCCCAAGAGAGACCAACTAGCCAGCAGTATCGCAGTTTCTTCTAGAAGGCATGTGGTCCTTTCAGATGGCACTCATGCCACTCAAAGTGCAGCCCTAGAAACTGCTATTTCTCCCCCTACCTTAGTTCAAGGGTCGTTGGCTACTCAAGGAAACCTGAGATCACTGCTGCTATCTGGTGACTTCTTCCCTGGAGCTGTTGTTGCCTGTATTTTTACAAAGCTTGTTTTGAGGTTGGAGGAGGTTCAACCATCCAAGGTTGAAAGGATAGTTCTATGCATCAGACTTCTCTGAATACCATAGATGCGACTAGAAAAATATGGCTTCACTGTTGCAAAGAAAGCATTGTTAACATGCTTGCAGACAAGCAATTCTGTGAAACCGAGAGGAAAGCCAAGGCTCAGGTTTCTCACTCTCAACCTGACAACCTCATCGACTTCTATCATTTGTAGAGCAAGAAGGTTAGTGTGAATATCTTTTTATTTATAGGTGTGTTGGTTTTATGGTAGAAGTCGTAGAACTTATGTTTAACAAATTAAGTAGATGGAAAATTAGAAGATAATCCTTCATTGACTCGTGATTCTTTATTCAATCTGCATTATCATACCAAAGGGAAGTTCAAACTTCAAATATGCTTTTCTTACCGTCTTTATTCGGAATTTTAGTTGGTTTTTAATTTGATATGCTAGCTATATGATGACTGTATTTAGCACAAATGGGAAGTACTAGCTTTTTTTCTTGTCATAACAATGTGGTCATGGCCTTGAACTCTATTTTGCCAGTGTGGAGGATGACTAATTTGATAATTCCTGCAGTCAAATAGTAGTAGACCTTCACTGTTGTAAATTTACTGTTTCTTTTTACTTTCTTGTAGGAACTTTAGTTCATATTGTTGTCTGCTAATTTTAATTTGATATTTTAATAATTGGTATCAGCATTTGTCGTATAGAATTGGTGTACAAGATTTTTTTTCATTTATAGTTTAAGAACTTTGGGAAAATGATATGTTCAAGCAAGTGTTGTCTTAGGATTTTCTTGATGCAGATAAATATTTTCAAAGTTTATAATTATCACAGATTACCTCAGCTTTTTCTATTAGATTGTTCATACGGGGAACTAGATTATGTCTTTGTTTGTAGAAATGCTAATCTAAACCTAGGAGCCATAATTCTGATGACTGATCTAAATGAGAAACATATATGGTTATAGTATCTTTCTCAAACTACCGGTTCTCACTTCTATGCTTTACATTGTTCTAGGTTATAGTTGTTACATGGGTTAGCTACAAGCCTAAGATGTTTTTTTTTTTGCAGAGCTAGCCGTCACATCTCTTATGTTAAAGTATCTATCTCTTTCTCTATTAGTACAGTTGATCAACGAGCTTTTTTAAACTCAATTCCCCCCTGATCCAGATTTTATTTTCGAGTACTTGATCACTTTCATAAGCATGCTTGAAATAATAACTACTCATCCATGCAATCATGGAAAGGTGTATTACTATATATGTTGGTTCCATTGGATATGAACCAATACTATTTGTCCATTTTATGTTCTGCTGATTTGTTTTCTTGATATGAGCTATTGCATATTCACACAACATTAGCCATTCTGGTTTGCATAATTGTACTCATGATGAGGTGCTTACTTAGTCCCTGCACAACTGCTGACCCAGTTCTGTTTTCTGCTTCATTTTGATATGAGCTGTCACATATTAATCTGCACAATGGTGCTGCTGATGGATTGTGCCGTGGGCAGACTTCACAAATACCTGCTGTCGAGGACTAAAAGTGCTGCAAAGGATGGTTGAAGCATAGTAGAAGCGTGGAAATTTCAGTTTGTAGAAACGTGGGCAGACTTCACAAATACCTGCTGCCGAGGACTAAAAGTGCTGCAAAGGATGGTTGAAGTATAGTAGAAGCGTGGAAATTTCAGTTTGTAAAAACTAGTTTTGACCAAAGTTGACCTTAGTTGACTATGCTAGTTTTTTGGGTTTCTTTGGGTTTTTTTTCTTGTAATTTTCTTTGTTTAGCTTTGGTAGGCTACTTTATTTCATCAAGACCGCATTTTGTTGCGTGACTAGGTTTGGTTGAGCTTGTATAAACTTTACTTCATTTTTTGGTTAATAAAATTTCTTGTGTACCAAAAAGAGGGAAAAAAAA

mRNA sequence

ATGCATGAAGATTTTGTTCAGTTTTACACCGCCACTGAGGAAGGAGAGGGCCAAGAGGCTCCCAAGAGAGACCAACTAGCCAGCAGTATCGCAGTTTCTTCTAGAAGGCATGTGGTCCTTTCAGATGGCACTCATGCCACTCAAAGTGCAGCCCTAGAAACTGCTATTTCTCCCCCTACCTTAGTTCAAGGGTCGTTGGCTACTCAAGGAAACCTGAGATCACTGCTGCTATCTGGTGACTTCTTCCCTGGAGCTGTTGTTGCCTGTATTTTTACAAAGCTTGTTTTGAGGTTGGAGGAGGTTCAACCATCCAAGACAAGCAATTCTGTGAAACCGAGAGGAAAGCCAAGGCTCAGGTTTCTCACTCTCAACCTGACAACCTCATCGACTTCTATCATTTGTAGAGCAAGAAGACTTCACAAATACCTGCTGTCGAGGACTAAAAGTGCTGCAAAGGATGGTTGAAGCATAGTAGAAGCGTGGAAATTTCAGTTTGTAGAAACGTGGGCAGACTTCACAAATACCTGCTGCCGAGGACTAAAAGTGCTGCAAAGGATGGTTGAAGTATAGTAGAAGCGTGGAAATTTCAGTTTGTAAAAACTAGTTTTGACCAAAGTTGACCTTAGTTGACTATGCTAGTTTTTTGGGTTTCTTTGGGTTTTTTTTCTTGTAATTTTCTTTGTTTAGCTTTGGTAGGCTACTTTATTTCATCAAGACCGCATTTTGTTGCGTGACTAGGTTTGGTTGAGCTTGTATAAACTTTACTTCATTTTTTGGTTAATAAAATTTCTTGTGTACCAAAAAGAGGGAAAAAAAA

Coding sequence (CDS)

ATGCATGAAGATTTTGTTCAGTTTTACACCGCCACTGAGGAAGGAGAGGGCCAAGAGGCTCCCAAGAGAGACCAACTAGCCAGCAGTATCGCAGTTTCTTCTAGAAGGCATGTGGTCCTTTCAGATGGCACTCATGCCACTCAAAGTGCAGCCCTAGAAACTGCTATTTCTCCCCCTACCTTAGTTCAAGGGTCGTTGGCTACTCAAGGAAACCTGAGATCACTGCTGCTATCTGGTGACTTCTTCCCTGGAGCTGTTGTTGCCTGTATTTTTACAAAGCTTGTTTTGAGGTTGGAGGAGGTTCAACCATCCAAGACAAGCAATTCTGTGAAACCGAGAGGAAAGCCAAGGCTCAGGTTTCTCACTCTCAACCTGACAACCTCATCGACTTCTATCATTTGTAGAGCAAGAAGACTTCACAAATACCTGCTGTCGAGGACTAAAAGTGCTGCAAAGGATGGTTGA

Protein sequence

MHEDFVQFYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLATQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSKTSNSVKPRGKPRLRFLTLNLTTSSTSIICRARRLHKYLLSRTKSAAKDG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo13787	Spo13787	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo13787.1	Spo13787.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13787.1.exon.1	Spo13787.1.exon.1	exon
Spo13787.1.exon.2	Spo13787.1.exon.2	exon
Spo13787.1.exon.3	Spo13787.1.exon.3	exon
Spo13787.1.exon.4	Spo13787.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13787.1.CDS.1	Spo13787.1.CDS.1	CDS
Spo13787.1.CDS.2	Spo13787.1.CDS.2	CDS
Spo13787.1.CDS.3	Spo13787.1.CDS.3	CDS
Spo13787.1.CDS.4	Spo13787.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13787.1.utr3p.1	Spo13787.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo13787.1 vs. NCBI nr
Match: gi|902231727|gb|KNA22373.1| (hypothetical protein SOVF_034580 [Spinacia oleracea])

HSP 1 Score: 170.6 bits (431), Expect = 2.100e-39
Identity = 91/98 (92.86%), Postives = 93/98 (94.90%), Query Frame = 1

		  
Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYTATEEGEGQEAPKRDQLASSI VSSRR VVL+DGT+ATQSAALETAISPPTLVQGSLA
Sbjct: 483 FYTATEEGEGQEAPKRDQLASSITVSSRRPVVLADGTYATQSAALETAISPPTLVQGSLA 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           TQGNLRSLLLSGDFF GAVVAC  TKLVLRLEEVQPSK
Sbjct: 543 TQGNLRSLLLSGDFFLGAVVACTLTKLVLRLEEVQPSK 580

[Close]

BLAST of Spo13787.1 vs. NCBI nr
Match: gi|731368336|ref|XP_010696091.1| (PREDICTED: coatomer subunit beta-1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 157.1 bits (396), Expect = 2.400e-35
Identity = 83/98 (84.69%), Postives = 88/98 (89.80%), Query Frame = 1

		  
Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYTA EEGE QE P+ DQLAS+I VSSRR VVL+DGT+ATQSAALETA+SPPTLV GSLA
Sbjct: 483 FYTAVEEGEAQEVPRSDQLASAITVSSRRPVVLADGTYATQSAALETAMSPPTLVHGSLA 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           TQGNLRSLLLSGDFF GAVVAC  TKLVLRLEEVQPSK
Sbjct: 543 TQGNLRSLLLSGDFFLGAVVACTLTKLVLRLEEVQPSK 580

[Close]

BLAST of Spo13787.1 vs. NCBI nr
Match: gi|449461669|ref|XP_004148564.1| (PREDICTED: coatomer subunit beta-1 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 6.100e-31
Identity = 75/98 (76.53%), Postives = 84/98 (85.71%), Query Frame = 1

		  
Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYTA+EEGE QE+ K  Q  SS  VSSRR  +L+DGT+ATQSAALETA+SPPTLVQGSL+
Sbjct: 483 FYTASEEGEAQESSKTSQQVSSTTVSSRRPAILADGTYATQSAALETAMSPPTLVQGSLS 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           + GNLRSL+LSGDFF GAVVAC  TKLVLRLEEVQPSK
Sbjct: 543 SIGNLRSLILSGDFFLGAVVACTLTKLVLRLEEVQPSK 580

[Close]

BLAST of Spo13787.1 vs. NCBI nr
Match: gi|659127983|ref|XP_008463989.1| (PREDICTED: coatomer subunit beta-1-like [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 6.100e-31
Identity = 75/98 (76.53%), Postives = 84/98 (85.71%), Query Frame = 1

		  
Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYTA+EEGE QE+ K  Q  SS  VSSRR  +L+DGT+ATQSAALETA+SPPTLVQGSL+
Sbjct: 483 FYTASEEGEAQESSKTSQQVSSTTVSSRRPAILADGTYATQSAALETAMSPPTLVQGSLS 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           + GNLRSL+LSGDFF GAVVAC  TKLVLRLEEVQPSK
Sbjct: 543 SIGNLRSLILSGDFFLGAVVACTLTKLVLRLEEVQPSK 580

[Close]

BLAST of Spo13787.1 vs. NCBI nr
Match: gi|1009152289|ref|XP_015894017.1| (PREDICTED: coatomer subunit beta-1-like [Ziziphus jujuba])

HSP 1 Score: 139.8 bits (351), Expect = 4.000e-30
Identity = 77/100 (77.00%), Postives = 84/100 (84.00%), Query Frame = 1

		  
Query: 8   FYTATEEGEGQEAPKRDQ--LASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGS 67
           F+TATEEGEGQE+ K       SS  VSSRR VVL+DGT+ATQSAALETA+SPPT VQGS
Sbjct: 486 FFTATEEGEGQESSKTSNPVTVSSTTVSSRRPVVLADGTYATQSAALETAMSPPTFVQGS 545

Query: 68  LATQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           LA+ GNLRSL+LSGDFF GAVVAC  TKLVLRLEEVQPSK
Sbjct: 546 LASIGNLRSLILSGDFFLGAVVACTLTKLVLRLEEVQPSK 585

[Close]

BLAST of Spo13787.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSD0_SPIOL (Coatomer subunit beta OS=Spinacia oleracea GN=SOVF_034580 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.500e-39
Identity = 91/98 (92.86%), Postives = 93/98 (94.90%), Query Frame = 1

		  
Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYTATEEGEGQEAPKRDQLASSI VSSRR VVL+DGT+ATQSAALETAISPPTLVQGSLA
Sbjct: 483 FYTATEEGEGQEAPKRDQLASSITVSSRRPVVLADGTYATQSAALETAISPPTLVQGSLA 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           TQGNLRSLLLSGDFF GAVVAC  TKLVLRLEEVQPSK
Sbjct: 543 TQGNLRSLLLSGDFFLGAVVACTLTKLVLRLEEVQPSK 580

[Close]

BLAST of Spo13787.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BB80_BETVU (Coatomer subunit beta OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g177690 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.700e-35
Identity = 83/98 (84.69%), Postives = 88/98 (89.80%), Query Frame = 1

		  
Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYTA EEGE QE P+ DQLAS+I VSSRR VVL+DGT+ATQSAALETA+SPPTLV GSLA
Sbjct: 483 FYTAVEEGEAQEVPRSDQLASAITVSSRRPVVLADGTYATQSAALETAMSPPTLVHGSLA 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           TQGNLRSLLLSGDFF GAVVAC  TKLVLRLEEVQPSK
Sbjct: 543 TQGNLRSLLLSGDFFLGAVVACTLTKLVLRLEEVQPSK 580

[Close]

BLAST of Spo13787.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LCU8_CUCSA (Coatomer subunit beta OS=Cucumis sativus GN=Csa_3G651770 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.300e-31
Identity = 75/98 (76.53%), Postives = 84/98 (85.71%), Query Frame = 1

		  
Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYTA+EEGE QE+ K  Q  SS  VSSRR  +L+DGT+ATQSAALETA+SPPTLVQGSL+
Sbjct: 483 FYTASEEGEAQESSKTSQQVSSTTVSSRRPAILADGTYATQSAALETAMSPPTLVQGSLS 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           + GNLRSL+LSGDFF GAVVAC  TKLVLRLEEVQPSK
Sbjct: 543 SIGNLRSLILSGDFFLGAVVACTLTKLVLRLEEVQPSK 580

[Close]

BLAST of Spo13787.1 vs. UniProtKB/TrEMBL
Match: A0A0B2RY30_GLYSO (Coatomer subunit beta OS=Glycine soja GN=glysoja_018128 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.700e-30
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 1

		  
Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYT TEEG+GQEA K  Q  +S  VSSRR  +L+DGT+ATQSAALETA+SPPTLVQGSL+
Sbjct: 483 FYTVTEEGDGQEASKPIQQVNSTTVSSRRPAILADGTYATQSAALETAMSPPTLVQGSLS 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           + GNLRSL+LSGDFF GAVVAC  TKLVLRLEEVQ SK
Sbjct: 543 SIGNLRSLILSGDFFLGAVVACTLTKLVLRLEEVQTSK 580

[Close]

BLAST of Spo13787.1 vs. UniProtKB/TrEMBL
Match: I1KG56_SOYBN (Coatomer subunit beta OS=Glycine max GN=GLYMA_07G004100 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.700e-30
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 1

		  
Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYT TEEG+GQEA K  Q  +S  VSSRR  +L+DGT+ATQSAALETA+SPPTLVQGSL+
Sbjct: 483 FYTVTEEGDGQEASKPIQQVNSTTVSSRRPAILADGTYATQSAALETAMSPPTLVQGSLS 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           + GNLRSL+LSGDFF GAVVAC  TKLVLRLEEVQ SK
Sbjct: 543 SIGNLRSLILSGDFFLGAVVACTLTKLVLRLEEVQTSK 580

[Close]

BLAST of Spo13787.1 vs. ExPASy Swiss-Prot
Match: COPB1_ORYSJ (Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica GN=Os11g0174000 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.100e-27
Identity = 72/123 (58.54%), Postives = 85/123 (69.11%), Query Frame = 1

		  
Query: 8   FYTATEEGEGQEAPKRDQ-LASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSL 67
           FYT +EEGE  +A K  Q + +S+ VSSRR VVL+DGT+ATQSAA ETAIS P +  GSL
Sbjct: 485 FYTVSEEGESTDASKPAQPVVNSVTVSSRRPVVLADGTYATQSAATETAISSPAVAPGSL 544

Query: 68  ATQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSKTSNSVKPRGKPRLRFLTLNLT 127
           ++  NLRSL+LSGDFF  AVVAC  TKLVLRLEEVQPSK   +    G   +    L L 
Sbjct: 545 SSTQNLRSLILSGDFFLAAVVACTLTKLVLRLEEVQPSKAEANKASTGALLIMVSILQLG 604

Query: 128 TSS 130
            SS
Sbjct: 605 QSS 607

[Close]

BLAST of Spo13787.1 vs. ExPASy Swiss-Prot
Match: COPB1_ARATH (Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=2 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 2.700e-26
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = 1

		  
Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FY+ +EE E  E  K+ Q  SS  VSSR+ V+L+DGT+ATQSAA ET  S PT+VQGSL 
Sbjct: 483 FYSVSEESEPTETSKKIQPTSSAMVSSRKPVILADGTYATQSAASETTFSSPTVVQGSL- 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSKT 107
           T GNLR+LLL+GDFF GAVVAC  TKLVLRLEEVQ SKT
Sbjct: 543 TSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKT 580

[Close]

BLAST of Spo13787.1 vs. ExPASy Swiss-Prot
Match: COPB2_ARATH (Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=2 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 2.700e-26
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = 1

		  
Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FY+ +EE E  E  K+ Q  SS  VSSR+ V+L+DGT+ATQSAA ET  S PT+VQGSL 
Sbjct: 483 FYSVSEESEPTETSKKIQPTSSAMVSSRKPVILADGTYATQSAASETTFSSPTVVQGSL- 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSKT 107
           T GNLR+LLL+GDFF GAVVAC  TKLVLRLEEVQ SKT
Sbjct: 543 TSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKT 580

[Close]

BLAST of Spo13787.1 vs. ExPASy Swiss-Prot
Match: COPB2_ORYSJ (Coatomer subunit beta-2 OS=Oryza sativa subsp. japonica GN=Os01g0281400 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.200e-23
Identity = 63/100 (63.00%), Postives = 78/100 (78.00%), Query Frame = 1

		  
Query: 6   VQFYTATEEGEGQEAPKRDQ-LASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQG 65
           V FYT +EEGE  ++ K  Q + +S+ VSSRR VVL+DGT+ATQSAA E AIS P++  G
Sbjct: 482 VPFYTVSEEGEATDSAKPAQPVVNSVTVSSRRPVVLADGTYATQSAATE-AISTPSVAPG 541

Query: 66  SLATQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPS 105
           SL++  NLRSL+LSGDFF  AV++C  TKLVLRLEEVQPS
Sbjct: 542 SLSSTLNLRSLILSGDFFLAAVISCTLTKLVLRLEEVQPS 580

[Close]

BLAST of Spo13787.1 vs. TAIR (Arabidopsis)
Match: AT4G31480.1 (Coatomer, beta subunit)

HSP 1 Score: 119.8 bits (299), Expect = 1.500e-27
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = 1

		  
Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FY+ +EE E  E  K+ Q  SS  VSSR+ V+L+DGT+ATQSAA ET  S PT+VQGSL 
Sbjct: 483 FYSVSEESEPTETSKKIQPTSSAMVSSRKPVILADGTYATQSAASETTFSSPTVVQGSL- 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSKT 107
           T GNLR+LLL+GDFF GAVVAC  TKLVLRLEEVQ SKT
Sbjct: 543 TSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKT 580

[Close]

BLAST of Spo13787.1 vs. TAIR (Arabidopsis)
Match: AT4G31490.1 (Coatomer, beta subunit)

HSP 1 Score: 119.8 bits (299), Expect = 1.500e-27
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = 1

		  
Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FY+ +EE E  E  K+ Q  SS  VSSR+ V+L+DGT+ATQSAA ET  S PT+VQGSL 
Sbjct: 483 FYSVSEESEPTETSKKIQPTSSAMVSSRKPVILADGTYATQSAASETTFSSPTVVQGSL- 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSKT 107
           T GNLR+LLL+GDFF GAVVAC  TKLVLRLEEVQ SKT
Sbjct: 543 TSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKT 580

The following BLAST results are available for this feature:

BLAST of Spo13787.1 vs. NCBI nr
BLAST of Spo13787.1 vs. UniProtKB/TrEMBL
BLAST of Spo13787.1 vs. ExPASy Swiss-Prot
BLAST of Spo13787.1 vs. TAIR (Arabidopsis)

BLAST of Spo13787.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

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Match Name	E-value	Identity	Description
gi\|902231727\|gb\|KNA22373.1\|	2.1e-39	92.8	hypothetical protein SOVF_0345...	[more]
gi\|731368336\|ref\|XP_010696091.1\|	2.4e-35	84.6	PREDICTED: coatomer subunit be...	[more]
gi\|449461669\|ref\|XP_004148564.1\|	6.1e-31	76.5	PREDICTED: coatomer subunit be...	[more]
gi\|659127983\|ref\|XP_008463989.1\|	6.1e-31	76.5	PREDICTED: coatomer subunit be...	[more]
gi\|1009152289\|ref\|XP_015894017.1\|	4.0e-30	77.0	PREDICTED: coatomer subunit be...	[more]

BLAST of Spo13787.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RSD0_SPIOL	1.5e-39	92.8	Coatomer subunit beta OS=Spina...	[more]
A0A0J8BB80_BETVU	1.7e-35	84.6	Coatomer subunit beta OS=Beta ...	[more]
A0A0A0LCU8_CUCSA	4.3e-31	76.5	Coatomer subunit beta OS=Cucum...	[more]
A0A0B2RY30_GLYSO	4.7e-30	75.5	Coatomer subunit beta OS=Glyci...	[more]
I1KG56_SOYBN	4.7e-30	75.5	Coatomer subunit beta OS=Glyci...	[more]

BLAST of Spo13787.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4

Position :

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Match Name	E-value	Identity	Description
COPB1_ORYSJ	9.1e-27	58.5	Coatomer subunit beta-1 OS=Ory...	[more]
COPB1_ARATH	2.7e-26	67.6	Coatomer subunit beta-1 OS=Ara...	[more]
COPB2_ARATH	2.7e-26	67.6	Coatomer subunit beta-2 OS=Ara...	[more]
COPB2_ORYSJ	1.2e-23	63.0	Coatomer subunit beta-2 OS=Ory...	[more]

BLAST of Spo13787.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
AT4G31480.1	1.5e-27	67.6	Coatomer, beta subunit	[more]
AT4G31490.1	1.5e-27	67.6	Coatomer, beta subunit	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016460	Coatomer beta subunit (COPB1)	PANTHER	PTHR10635	COATOMER SUBUNIT BETA	coord: 11..105 score: 7.8

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030126	COPI vesicle coat
molecular_function	GO:0005198	structural molecule activity