Spo13899.1 (mRNA)

Overview
NameSpo13899.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00215 : 580651 .. 584150 (+)
Sequence length1070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAATACGGCATACTCGTTGTAGAACATGGAATCAGAAGTCAGAGCCTAATTTTCTTTTCCCCTTCGTTCTACCAACGAAAACCAACCCCTACTCCCCCATTTTAGATCTGCGAATTCGATCAGTCCCAAACTTTGCAATCCTTTGTTCTCAATCAAAACCCCTAACTTATTTTCCATAATCATCCTCAATATCACCAATTTCTGCTGCTCGCCGAAATTGAATGAAAACCCCTAATTTTCGAAAATTTCAATGGTTGAGTTTCAATAACGTAAATTTCGACATTAAAATCTGTATGATCCATGGAGGTTTTGTACGGAGAGTCCAGTCGCTGAGCTCAAATAACATATCTAACATACAAAGGATGAATCGCAAGCTCAAAGTTAAGTTGAAGAAAATTTTCGATTATTTTTCATCTGGGTGAATTAGGGTTTTTAATTCGATTCAATACATCTAGGATGGTATCTGAAATTGCTTGAATTTATTCTTGTTTCCATTGATAGAAATGTTGAGTTTACCTCTAGATCTGAGAGGAAGGAGGCGGCCCTTGCTACTTTTTAGAAAAACGAGTCGTATTGCTTATAAGGTTTGGCGGTACGCTTCCTTTCATTTTCTTCTTCCTTTGGAGCTTTGAATCAAGAGATTTTTGTAATTCTTTCGGTTCTTTTGTTTGTTCCTCGTAATTGAGTTGTTTATTGTTAGTGTTGAGTTAGGGTTTATGGTTTTAAAATTAACAAAATTTAAGCATAATTCTGGCATTCTAGGTAGTTGATGCATCAAATTGTGAAAACTGATTGTGCAAAATTCGTGGGAGATACTGATCAAAATAAATTGAGCTGAAAAAAAAACCCAAGTCTATACTTACGGTTTGATTAAAAAAAATTGGATTATTTCGGTAGAACAAAGGGGGACGAAATCGATGGATATGAGAGGTTGAATGATGCTTTTAAGATAAAAATCTATCAAAATTGGGCAGCTGAAATTTATCATAAACTAATTGTGAGTTAGGCGGCTAAATTTAGGCTGCTAAACATCTCAAGATGATAGAATCTATTGCACCTACGTTTTACCAAGGAGATAGTTGTCCTCTTAAGAATAAGGCAATCTTAATGCAGTAGTATATGAAGAGAGAGAAGCTGGTGTATTTGTGAGCCTAAGGTTGTGTTTTACACATTCTGAATAATAGTTTATGTAATTAGTACGTAGGAGAGGAAATGATGAGAGAAGTGACCACAGGTTCACTCTATTGAAGAATAATTGTCCATGAACTCTAGTAGATGATCACCTTGTTACTAAATCTTGAAGTTCTACTGAACAAAAACTTCCCAACTCATTATTGAACTTCTATCAGCTGCGCTGGCGTATTTGATAATTTTGTGACCACAGGTTCAGTCTATTGAAGAATAATTGTCCATGAACTCTACCTTGTTACTAAATCTTGAAGTTATACTGAACAAAAACTTCCCAACTCATTATTGAACTTCTATCAGCTGCGCTGGCGTATTTGATAATTTTGTGTTACAATGCCGTGCTTTTACAAATTTTTATCAAAGTCTGGTACCCAACTCATTTTGTGTTACTCACTGACCTATAATGATTAAACGTTTGAAAAAATAAATCAATCAAAATTTAGTTAACAGTTGGTTAACTCGCCGAAATTGGGAAGTGCGTGCCTAAGGGTGTAAAAAATAAAGTTAGTCCCCAAAAGGTGAAAAAGGCCAAATTTTAGTCCCTAAATGTTACCTTAACTCTTCCGTATCTTGTCTTATATTTTCAGATCATTACTGCACCTCTCTCACTTCTCTCTAGATGGAAGTCTTATACTTGTACATGTGTGTGGATTAATGTTTTCATTCCACTGTTAAATACAGGTGACTAGTTTAGGTGTTTGTAAATTTTTTATGCCTGAGAGCAGTTATGTATTACATCACCTAGGAGATGTTTTCAGAATGTTCTTTGAGTCAGGTAGATGCTTATAAGTTCAATCTTGTAATTTATTTTTATTGAACTTAGCTTCTTTTGTTCGGCCTGAAACTGACTTGACCAACTTTAACAATCCCAATCCAGATTATTGAACGCCATCAACCGATTGCCTTTGCTAGGAGTTAATTTCTTGTGGGATATCGGTTGCTCAAACCTAAAATTGATTGTTTGTGGTCTCGGTTGTATGACCTTTCTCACTCGTACATTAAGATGAAAACTAAACTATTTTTTTTTGAAGTTGTTGTATTCTTGAAATAATTAGTCATAGTATTTGCTGTTCTGGATAGTTTTAAACCTGCATTGACAATGATCCAGTGTTACTGGCTGGTTGTTGAACTAAAACGTAGAGGCATGACTTATTTTGAAACAAATTGACTATCTCTATTGATGGTGTGTCGTAATGAATGTTTCTTTGCAGATTAGTGTAATAGGCATGCCAATGTTGTGGTAAGATCTAATTTGGTCCTACATAGTTGATGTGAATTTTTCTGTTGTTCGGCCTTATCGTTCCAACAGTGGTATGTGGAGCTGTTATGTACAGGATCTTTACTGGTGCAATGTAGATTAATTTTCGTATAAGTTCACATGTTAAATTCAGGTGCTGATTGAAAGCATGGTAAATGACGTATTTATGTATTAAGATACAATAATCAAAGTCCAATATGGATGGAAATATCCCAACTCCTATAGTTTAAAGAAAATTTGCATAATATTCAATTGGTTTTAGATTGTCTTTGCACATCTCTTTTTGCTTAGTCATTCTGCTTCTTGATTTTTCTATATACCAGACTGGAGGTAGTCAAGCTAGTTTGTCTTTGAGAGGGCGCGACACTTTTGGTCGTCAAGGTAGAGGAAAAGCTAGTCGGTCATTGAATTTCGGGATGATGATCGATCTTTCAGTTCTACCAAGGCACACAAAAGTGATTGCAAGGTGTTGCTAAGAAGGCTGCTAATTAAATACGGTAATTTGTCCTAAATTGTAAGACTTATTTATTCATCTGTTGTGTTGGTTAAGATTTATTACATTATGTGTAAATTTGGTTGAATTATTCAATAGTTAGTCTATGCAGGAGTGTGGATGATTGCTGCTTCGGGCTAGTGTGTAATTCCCCATCCGTAAAGATTGACGGTTAACATTGTCCATTTGTAAAATTTACGGTTACTTCATAATATACGGAGTCACTTTTTAATGTTTCTATATAGGTTGAAACGAGATTTTATTCTTGTACTTGCACAATTTTGTACTTTTAGACGTAAAATTTTGATCATGAATGAATAATTTGTAATTATTTGTACAAAATATTTTGGAGGTAATATTTGTTTATTTTCCGATTGGTGCTTTGTTGAAATTTAACCAATATTAATAAGCAGTAATTTTTTTTTAATCAAAAATCATCAAAGAGACCTGTTAGGTTAGATATTGGGTCTGTACCATTTATTTTTAAATAGTATTATGGCAAAGACACCCGTTAGGTGAAATAGGGGTCTGAGGTTGCGGGGAAAAAAAAATATCAAAG

mRNA sequence

ATTAATACGGCATACTCGTTGTAGAACATGGAATCAGAAGTCAGAGCCTAATTTTCTTTTCCCCTTCGTTCTACCAACGAAAACCAACCCCTACTCCCCCATTTTAGATCTGCGAATTCGATCAGTCCCAAACTTTGCAATCCTTTGTTCTCAATCAAAACCCCTAACTTATTTTCCATAATCATCCTCAATATCACCAATTTCTGCTGCTCGCCGAAATTGAATGAAAACCCCTAATTTTCGAAAATTTCAATGGTTGAGTTTCAATAACGTAAATTTCGACATTAAAATCTGTATGATCCATGGAGGTTTTGTACGGAGAGTCCAGTCGCTGAGCTCAAATAACATATCTAACATACAAAGGATGAATCGCAAGCTCAAAAAATGTTGAGTTTACCTCTAGATCTGAGAGGAAGGAGGCGGCCCTTGCTACTTTTTAGAAAAACGAGTCGTATTGCTTATAAGACTGGAGGTAGTCAAGCTAGTTTGTCTTTGAGAGGGCGCGACACTTTTGGTCGTCAAGGTAGAGGAAAAGCTAGTCGGTCATTGAATTTCGGGATGATGATCGATCTTTCAGTTCTACCAAGGCACACAAAAGTGATTGCAAGGTTTAGTCTATGCAGGAGTGTGGATGATTGCTGCTTCGGGCTAGTGTGTAATTCCCCATCCGTAAAGATTGACGGTTAACATTGTCCATTTGTAAAATTTACGGTTACTTCATAATATACGGAGTCACTTTTTAATGTTTCTATATAGGTTGAAACGAGATTTTATTCTTGTACTTGCACAATTTTGTACTTTTAGACGTAAAATTTTGATCATGAATGAATAATTTGTAATTATTTGTACAAAATATTTTGGAGGTAATATTTGTTTATTTTCCGATTGGTGCTTTGTTGAAATTTAACCAATATTAATAAGCAGTAATTTTTTTTTAATCAAAAATCATCAAAGAGACCTGTTAGGTTAGATATTGGGTCTGTACCATTTATTTTTAAATAGTATTATGGCAAAGACACCCGTTAGGTGAAATAGGGGTCTGAGGTTGCGGGGAAAAAAAAATATCAAAG

Coding sequence (CDS)

ATGTTGAGTTTACCTCTAGATCTGAGAGGAAGGAGGCGGCCCTTGCTACTTTTTAGAAAAACGAGTCGTATTGCTTATAAGACTGGAGGTAGTCAAGCTAGTTTGTCTTTGAGAGGGCGCGACACTTTTGGTCGTCAAGGTAGAGGAAAAGCTAGTCGGTCATTGAATTTCGGGATGATGATCGATCTTTCAGTTCTACCAAGGCACACAAAAGTGATTGCAAGGTTTAGTCTATGCAGGAGTGTGGATGATTGCTGCTTCGGGCTAGTGTGTAATTCCCCATCCGTAAAGATTGACGGTTAA

Protein sequence

MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMMIDLSVLPRHTKVIARFSLCRSVDDCCFGLVCNSPSVKIDG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo13899Spo13899gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo13899.1Spo13899.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo13899.1.exon.1Spo13899.1.exon.1exon
Spo13899.1.exon.2Spo13899.1.exon.2exon
Spo13899.1.exon.3Spo13899.1.exon.3exon
Spo13899.1.exon.4Spo13899.1.exon.4exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo13899.1.utr5p.1Spo13899.1.utr5p.1five_prime_UTR
Spo13899.1.utr5p.2Spo13899.1.utr5p.2five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo13899.1.CDS.1Spo13899.1.CDS.1CDS
Spo13899.1.CDS.2Spo13899.1.CDS.2CDS
Spo13899.1.CDS.3Spo13899.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo13899.1.utr3p.1Spo13899.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo13899.1 vs. NCBI nr
Match: gi|902146053|gb|KNA05026.1| (hypothetical protein SOVF_194220 [Spinacia oleracea])

HSP 1 Score: 145.2 bits (365), Expect = 6.100e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

		  

Query: 1  MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM 60
          MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM
Sbjct: 1  MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM 60

Query: 61 IDLSVLPRHTKVIAR 76
          IDLSVLPRHTKVIAR
Sbjct: 61 IDLSVLPRHTKVIAR 75
[Close]
BLAST of Spo13899.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEQ4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_194220 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.300e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

		  

Query: 1  MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM 60
          MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM
Sbjct: 1  MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM 60

Query: 61 IDLSVLPRHTKVIAR 76
          IDLSVLPRHTKVIAR
Sbjct: 61 IDLSVLPRHTKVIAR 75
The following BLAST results are available for this feature:
BLAST of Spo13899.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902146053|gb|KNA05026.1|6.1e-32100.hypothetical protein SOVF_1942... [more]
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BLAST of Spo13899.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QEQ4_SPIOL4.3e-32100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo13899.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo13899.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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