Spo14063.1 (mRNA)

Overview
NameSpo14063.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S20-2
LocationSpoScf_08507 : 1433 .. 2730 (-)
Sequence length432
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCTGTATTTCGCTAGAGCTCGAAGCCGCCGAAGTTTGATTTTCTCTCCCTTTGCACCGTCGCACGCATTTTCTACTTCAGGTGCTCTTTTCATCTCTCTTCTCGCAGTCGCTGTAGATTTCAATCTTTGTTTTTTCTCAATTTCTTTTTGCTTTTAGTAGCAAAAATGGCGTACCCAATGAAGCCAACGAAGCCGGGAGTGGAGGAATCACAAGAACCCACTCACAAGATTAGAATTACCCTTTCTTCGAAGGATGTTAAGAATCTCGAGAAAGGTATCACATTTATTTTCTTCGATTTGTTATTTTTTTGTTTCAGATTTCTTCAATTTGTACTTATATTTTGTGCAATTATAATTAGTGCTTAGGTTTGGAGTGTTTTGGGATTTAACTTATTGCTTTAAATGTTTGTATGTGTTATCCAATATGAGGGCTGTAGTTTAATTTTGTGGGGGGTTTCGGATGAAAATTGATTAAGATTCTACCTGATAAACTATAATGATCGATAAATCGGGATGTTGTTGAGGGAGGTAAACTATAATTGATTTAACTTATTGCTTTAAATTAATTTGTTTCTGTCTTGAAGTCAATTTATGAAAATTTCTTTGACTTGTCTTAATATGTTGAACAGTTTGTGCTGATCTTGTGCGGGGTGCAAAGGACAAACACCTGAGGGTCAAGGGACCTGTCAGGATGCCAACCAAGGTTCTGAAGATTACAACTAGGAAGTCTCCTTGTGGTGAAGGTAGGTAAACATTGATGAAAATGTACCATGTATTGCTTATTAGAATTCATTTTAATGGTTGTTGGTAATTGATGAGTTTCATATGAGAATCATCAATCCCGTACTTAATTTGGTTTCACATGATAGGAAAACTGTTGTAGCTATATGGAACACAAGTTGGCTGTTTATTACAGTATTGTTTTCTCTTTGTATGCCTCATGCAGTAAGGATAACTTAATCCTGTGGCTTTGATATCATCCCTGCAAACTCATGAATCTGTATTTTGGTCTAGGCTTTGTCAGTTGGTCGTCTATGCAGGAGATGTAAGGAGATACCTAGTGATTTTTTATGTTAGGGTTTAGTGATAGTAGATGCAGAATGCTGAATCTTTTTCCACTGTTATTTGCACATAAGCTTCATTGAATTCAACTGCGCATATCTTTTTGATGCAGGAACCAACACCTTTGACAGATTCGAGTTACGTGTTCACAAGAGAGTAATTGACCTCTTCAGCTCCCCAGATGTGGTCAAGCAGATTACTTCCATCACCATTGAACCTGGCGTTGAGGTTGAG

mRNA sequence

TGCCTGTATTTCGCTAGAGCTCGAAGCCGCCGAAGTTTGATTTTCTCTCCCTTTGCACCGTCGCACGCATTTTCTACTTCAGCAAAAATGGCGTACCCAATGAAGCCAACGAAGCCGGGAGTGGAGGAATCACAAGAACCCACTCACAAGATTAGAATTACCCTTTCTTCGAAGGATGTTAAGAATCTCGAGAAAGTTTGTGCTGATCTTGTGCGGGGTGCAAAGGACAAACACCTGAGGGTCAAGGGACCTGTCAGGATGCCAACCAAGGTTCTGAAGATTACAACTAGGAAGTCTCCTTGTGGTGAAGGAACCAACACCTTTGACAGATTCGAGTTACGTGTTCACAAGAGAGTAATTGACCTCTTCAGCTCCCCAGATGTGGTCAAGCAGATTACTTCCATCACCATTGAACCTGGCGTTGAGGTTGAG

Coding sequence (CDS)

ATGGCGTACCCAATGAAGCCAACGAAGCCGGGAGTGGAGGAATCACAAGAACCCACTCACAAGATTAGAATTACCCTTTCTTCGAAGGATGTTAAGAATCTCGAGAAAGTTTGTGCTGATCTTGTGCGGGGTGCAAAGGACAAACACCTGAGGGTCAAGGGACCTGTCAGGATGCCAACCAAGGTTCTGAAGATTACAACTAGGAAGTCTCCTTGTGGTGAAGGAACCAACACCTTTGACAGATTCGAGTTACGTGTTCACAAGAGAGTAATTGACCTCTTCAGCTCCCCAGATGTGGTCAAGCAGATTACTTCCATCACCATTGAACCTGGCGTTGAGGTTGAG

Protein sequence

MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo14063Spo14063gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo14063.1Spo14063.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14063.1.utr5p.2Spo14063.1.utr5p.2five_prime_UTR
Spo14063.1.utr5p.1Spo14063.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14063.1.CDS.3Spo14063.1.CDS.3CDS
Spo14063.1.CDS.2Spo14063.1.CDS.2CDS
Spo14063.1.CDS.1Spo14063.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14063.1.exon.4Spo14063.1.exon.4exon
Spo14063.1.exon.3Spo14063.1.exon.3exon
Spo14063.1.exon.2Spo14063.1.exon.2exon
Spo14063.1.exon.1Spo14063.1.exon.1exon


Homology
[Close]
BLAST of Spo14063.1 vs. NCBI nr
Match: gi|902200956|gb|KNA13866.1| (hypothetical protein SOVF_112580 [Spinacia oleracea])

HSP 1 Score: 231.1 bits (588), Expect = 9.800e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

		  

Query: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60
           MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT
Sbjct: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 115
[Close]
BLAST of Spo14063.1 vs. NCBI nr
Match: gi|731322607|ref|XP_010671990.1| (PREDICTED: 40S ribosomal protein S20-2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 223.0 bits (567), Expect = 2.700e-55
Identity = 111/115 (96.52%), Postives = 114/115 (99.13%), Query Frame = 1 

		  

Query: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60
           MAYPMKPTKPG+EESQE THKIRITLSSK+VKNLEKVCADLVRGAKDKHLRVKGPVRMPT
Sbjct: 1   MAYPMKPTKPGMEESQETTHKIRITLSSKNVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KVLKITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 115
[Close]
BLAST of Spo14063.1 vs. NCBI nr
Match: gi|902217465|gb|KNA17727.1| (hypothetical protein SOVF_077440 [Spinacia oleracea])

HSP 1 Score: 220.3 bits (560), Expect = 1.700e-54
Identity = 109/115 (94.78%), Postives = 113/115 (98.26%), Query Frame = 1 

		  

Query: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60
           MAYP+KP KPG+EE+QEPTHKIRITLSSKDVKNLEKVCADLVRGAKDK LRVKGPVRMPT
Sbjct: 1   MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KVLKITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 115
[Close]
BLAST of Spo14063.1 vs. NCBI nr
Match: gi|731377209|ref|XP_010667811.1| (PREDICTED: 40S ribosomal protein S20-2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 219.9 bits (559), Expect = 2.200e-54
Identity = 110/115 (95.65%), Postives = 113/115 (98.26%), Query Frame = 1 

		  

Query: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60
           MAYPMKPTKPG+EESQE THKIRITLSSK+VKNLEKVCADLVRGAKDK LRVKGPVRMPT
Sbjct: 1   MAYPMKPTKPGMEESQETTHKIRITLSSKNVKNLEKVCADLVRGAKDKQLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KVLKITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 115
[Close]
BLAST of Spo14063.1 vs. NCBI nr
Match: gi|955352209|ref|XP_014619850.1| (PREDICTED: 40S ribosomal protein S20-2-like [Glycine max])

HSP 1 Score: 209.9 bits (533), Expect = 2.300e-51
Identity = 107/116 (92.24%), Postives = 111/116 (95.69%), Query Frame = 1 

		  

Query: 1   MAYP-MKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60
           MAY  MKPTKPG+EESQE  HKIRITLSSK+VKNLEKVCADLVRGAKDKHLRVKGPVRMP
Sbjct: 5   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKHLRVKGPVRMP 64

Query: 61  TKVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           TKVL ITTRKSPCGEGTNT+DRFELRVHKRVIDL+SSPDVVKQITSITIEPGVEVE
Sbjct: 65  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVE 120
[Close]
BLAST of Spo14063.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R2W8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_112580 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 6.800e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

		  

Query: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60
           MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT
Sbjct: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 115
[Close]
BLAST of Spo14063.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFX4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_077440 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.200e-54
Identity = 109/115 (94.78%), Postives = 113/115 (98.26%), Query Frame = 1 

		  

Query: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60
           MAYP+KP KPG+EE+QEPTHKIRITLSSKDVKNLEKVCADLVRGAKDK LRVKGPVRMPT
Sbjct: 1   MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KVLKITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 115
[Close]
BLAST of Spo14063.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B5L7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_012430 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.600e-54
Identity = 110/115 (95.65%), Postives = 113/115 (98.26%), Query Frame = 1 

		  

Query: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60
           MAYPMKPTKPG+EESQE THKIRITLSSK+VKNLEKVCADLVRGAKDK LRVKGPVRMPT
Sbjct: 1   MAYPMKPTKPGMEESQETTHKIRITLSSKNVKNLEKVCADLVRGAKDKQLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KVLKITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 115
[Close]
BLAST of Spo14063.1 vs. UniProtKB/TrEMBL
Match: A0A0B2RGQ7_GLYSO (40S ribosomal protein S20-2 OS=Glycine soja GN=glysoja_026344 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.600e-51
Identity = 107/116 (92.24%), Postives = 111/116 (95.69%), Query Frame = 1 

		  

Query: 1   MAYP-MKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60
           MAY  MKPTKPG+EESQE  HKIRITLSSK+VKNLEKVCADLVRGAKDKHLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60

Query: 61  TKVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           TKVL ITTRKSPCGEGTNT+DRFELRVHKRVIDL+SSPDVVKQITSITIEPGVEVE
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVE 116
[Close]
BLAST of Spo14063.1 vs. UniProtKB/TrEMBL
Match: I1M7C7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G044100 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.600e-51
Identity = 107/116 (92.24%), Postives = 111/116 (95.69%), Query Frame = 1 

		  

Query: 1   MAYP-MKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60
           MAY  MKPTKPG+EESQE  HKIRITLSSK+VKNLEKVCADLVRGAKDKHLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60

Query: 61  TKVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           TKVL ITTRKSPCGEGTNT+DRFELRVHKRVIDL+SSPDVVKQITSITIEPGVEVE
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVE 116
[Close]
BLAST of Spo14063.1 vs. ExPASy Swiss-Prot
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.200e-50
Identity = 103/116 (88.79%), Postives = 107/116 (92.24%), Query Frame = 1 

		  

Query: 1   MAY-PMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60
           MAY PMKPTK G+E   E  HKIRITLSSK+VKNLEKVC DLVRGAKDK LRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           TKVLKITTRK+PCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
[Close]
BLAST of Spo14063.1 vs. ExPASy Swiss-Prot
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2)

HSP 1 Score: 198.0 bits (502), Expect = 5.700e-50
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 1 

		  

Query: 4   PMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVL 63
           PMKP K G+EE  E  HKIRITLSSK+VKNLEKVC DLVRGAKDK LRVKGPVRMPTKVL
Sbjct: 7   PMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 66

Query: 64  KITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KITTRK+PCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 67  KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 118
[Close]
BLAST of Spo14063.1 vs. ExPASy Swiss-Prot
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2)

HSP 1 Score: 184.5 bits (467), Expect = 6.600e-46
Identity = 95/114 (83.33%), Postives = 100/114 (87.72%), Query Frame = 1 

		  

Query: 2   AYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPTK 61
           A PMK  K G E SQE  H+IRITLSSK VKNLEKVC DLV+GAKDK L+VKGPVRMPTK
Sbjct: 9   APPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTK 68

Query: 62  VLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           VL ITTRKSPCGEGTNT+DRFE+RVHKRVIDL SS DVVKQITSITIEPGVEVE
Sbjct: 69  VLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVE 122
[Close]
BLAST of Spo14063.1 vs. ExPASy Swiss-Prot
Match: RS20_HUMAN (40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.300e-37
Identity = 72/102 (70.59%), Postives = 93/102 (91.18%), Query Frame = 1 

		  

Query: 14  ESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLKITTRKSPCG 73
           E +   H+IRITL+S++VK+LEKVCADL+RGAK+K+L+VKGPVRMPTK L+ITTRK+PCG
Sbjct: 12  EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 74  EGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           EG+ T+DRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVE
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVE 113
[Close]
BLAST of Spo14063.1 vs. ExPASy Swiss-Prot
Match: RS20_BOVIN (40S ribosomal protein S20 OS=Bos taurus GN=RPS20 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.300e-37
Identity = 72/102 (70.59%), Postives = 93/102 (91.18%), Query Frame = 1 

		  

Query: 14  ESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLKITTRKSPCG 73
           E +   H+IRITL+S++VK+LEKVCADL+RGAK+K+L+VKGPVRMPTK L+ITTRK+PCG
Sbjct: 12  EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 74  EGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           EG+ T+DRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVE
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVE 113
[Close]
BLAST of Spo14063.1 vs. TAIR (Arabidopsis)
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 200.3 bits (508), Expect = 6.500e-52
Identity = 103/116 (88.79%), Postives = 107/116 (92.24%), Query Frame = 1 

		  

Query: 1   MAY-PMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60
           MAY PMKPTK G+E   E  HKIRITLSSK+VKNLEKVC DLVRGAKDK LRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           TKVLKITTRK+PCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
[Close]
BLAST of Spo14063.1 vs. TAIR (Arabidopsis)
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 198.0 bits (502), Expect = 3.200e-51
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 1 

		  

Query: 4   PMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVL 63
           PMKP K G+EE  E  HKIRITLSSK+VKNLEKVC DLVRGAKDK LRVKGPVRMPTKVL
Sbjct: 7   PMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 66

Query: 64  KITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KITTRK+PCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 67  KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 118
[Close]
BLAST of Spo14063.1 vs. TAIR (Arabidopsis)
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 198.0 bits (502), Expect = 3.200e-51
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 1 

		  

Query: 4   PMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVL 63
           PMKP K G+EE  E  HKIRITLSSK+VKNLEKVC DLVRGAKDK LRVKGPVRMPTKVL
Sbjct: 7   PMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 66

Query: 64  KITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KITTRK+PCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 67  KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 118
The following BLAST results are available for this feature:
BLAST of Spo14063.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902200956|gb|KNA13866.1|9.8e-58100.hypothetical protein SOVF_1125... [more]
gi|731322607|ref|XP_010671990.1|2.7e-5596.5PREDICTED: 40S ribosomal prote... [more]
gi|902217465|gb|KNA17727.1|1.7e-5494.7hypothetical protein SOVF_0774... [more]
gi|731377209|ref|XP_010667811.1|2.2e-5495.6PREDICTED: 40S ribosomal prote... [more]
gi|955352209|ref|XP_014619850.1|2.3e-5192.2PREDICTED: 40S ribosomal prote... [more]
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BLAST of Spo14063.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R2W8_SPIOL6.8e-58100.Uncharacterized protein OS=Spi... [more]
A0A0K9RFX4_SPIOL1.2e-5494.7Uncharacterized protein OS=Spi... [more]
A0A0J8B5L7_BETVU1.6e-5495.6Uncharacterized protein OS=Bet... [more]
A0A0B2RGQ7_GLYSO1.6e-5192.240S ribosomal protein S20-2 OS... [more]
I1M7C7_SOYBN1.6e-5192.2Uncharacterized protein OS=Gly... [more]
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BLAST of Spo14063.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS202_ARATH1.2e-5088.740S ribosomal protein S20-2 OS... [more]
RS201_ARATH5.7e-5089.240S ribosomal protein S20-1 OS... [more]
RS20_ORYSJ6.6e-4683.340S ribosomal protein S20 OS=O... [more]
RS20_HUMAN3.3e-3770.540S ribosomal protein S20 OS=H... [more]
RS20_BOVIN3.3e-3770.540S ribosomal protein S20 OS=B... [more]
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BLAST of Spo14063.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT3G47370.26.5e-5288.7Ribosomal protein S10p/S20e fa... [more]
AT3G45030.13.2e-5189.2Ribosomal protein S10p/S20e fa... [more]
AT5G62300.13.2e-5189.2Ribosomal protein S10p/S20e fa... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 21..34
score: 1.6E-14coord: 56..71
score: 1.6E-14coord: 78..92
score: 1.6
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 19..115
score: 15
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 5..115
score: 6.1
IPR005729Ribosomal protein S10, eukaryotic/archaealTIGRFAMsTIGR01046TIGR01046coord: 20..115
score: 1.2
IPR027486Ribosomal protein S10 domainGENE3D3.30.70.600coord: 20..115
score: 5.3
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 23..115
score: 2.2
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 23..115
score: 1.7
IPR027486Ribosomal protein S10 domainunknownSSF54999Ribosomal protein S10coord: 21..115
score: 1.44
NoneNo IPR availablePANTHERPTHR11700:SF10SUBFAMILY NOT NAMEDcoord: 5..115
score: 6.1

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding