Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAAACTGACCTCATCACCTTCCTCCCCCAGCGTCGGTGACTCACTGCACTCTCTCACTCGCAGAGGAGAGAGAAAATAAATTTTAGTCGTTTATATAAAACCCCCACCTCACCGAACGCAAAAACCCCGAAATAAATTAAAAAATTTCCAAATATAGAGAGAAAAGTTGGAGAGAGAGAAATAATGGGAGATTCTAGCGACTCTATTTCTGTTCATATTGAATCGATCTCCATTGATAGCAAGGTACATTTTCATTTTCATTTATTTCTTGTAATTATTTCACTGATTTATTAATTAATTAACTGTGATTTTATAGCATTAATTAACGGGTGCTGCTAATTTTGGATACTTGTTAGTTATATGTTAATATGAGAAAACTAATTTTAGCTGATTTTACGAAATTGGTGATGATTTTGGGATTTTTTAAGTTTTTGTGGGGGACCAAAATGGATGATTATATTGCATCTTAGGACAGAAATTCAAATAGTTTCTACATTTGGAACAAAATGATTCATTTTTAATGTTTGTTTCATGAATTTTTGATTATTGTTGTTGTTGTTGTTGTTATTGTTAAGTGCATTGCGTAAGTGTTTAATGTTGTAATTTGTTCAGGAATATTATGTTAAAACGGGTTCGGGTCCGGTGTCGGTAGCTGTTTATGGTGATCAAGATAAGCCAGCTCTTGTTACTTACCCAGATTTAGCTCTAAATTGTGAGTTGTATTATGTAACTGATTGATTGATTGATTAATTAATTAAGTAATTAATAAAGTTTCAAAGTTTTGTTGATGTTGTTACTTTCCAGCATTTGTTTATGTGTGTTTTAAGTCTTGTGGAGTTGTCTTGTGGTAGGTATTGGTGTTTATTGTGTTAACTTCTACATGAATTTCCAAATGTTTGTTTACTAAGCATGATTATGATCCAATGCCTAGAAAAAAGAAACAAAAGACTGTTGCGTGGCATTTAAGATTTGTGTTTAATTATGATTAACATGTAAATTATGTAATGGCTACTCCACTTGTATTACAATTCGAATAATGAATTCGATTTTTAATTTATTTGCGGCTTATGTTAAGCAGATGCTTCGTGTTTTCAAGGATTATTCTTGTGTCCCGAGGCGTTATCTTTGCTTGTTCACAACTTTTGCATCTACCATATCAGCCCTCCTGGCCATGAGGTTTGTAACTTGGACTAGTTAGTCTTTTTATTTTATTTTATTTATAATACTATGTTTGTTCGCATTCAGTTGTCATATTACTCGTTCAAATTACGTTAGTAATATGACTGTTTATTTCGGGTGGAGGAAATGTATATTTATTTTCTTCTTTCTTATATATTAATAGGAGTAGTTAACTCGTATTATTATTCATCTTGGTTGGCTTCTTGTTTGACTACTGTTGAAGGACCTTGGTTGCATTGTTTCTAATATGAACTTTTGTTAAGAGCTGTTTCAGTGGGGAGCTGCTCCAATAAGCTATGAATACGAGGCCTCCACGCCTTCCGTGGATGATTTGGCTGACCAGATAGTTGAGGTTCTTGACTACTTCGGGTAATTTCCATTACAAAAACTTTTTACAAGCTTAGTATGCGTTATATTCACCTGATTTTCACCTATTTTTCCTTAACTTATCTTAACATTTTAAAACTTGTCAAAACTTATTTTAGTTTTAAATTATACTTGGTTAACCCTTATTTTTCCAAAAATAAGTGGAAATAAGGTGAACATAACATAACCTTAGAGTCTCTTGTAAAATATTACAGCGTAGTGCTGTGGCCTTTGGTTGCTACCTTGACCCTTCTCAGATTAGCAGTGACTAGCACCATTGGTGAAACTTACGTTGGATGTCATTTGTTGCAGGCTAGGCGAAGTTATGTGTATGGGAGTTACTGCTGGAGCATACATTTTAACCTTATTTGCGGTTAGTTGTATCACAATGTTTTCGTACCAATTGTGCCAAAAAAGTTCCAAAAAAGTTGTATTTGTACTCATTGTCATTCTTTTTTCCCTTTTTGCATGCAGACGAAATATAAGCAGCGTGTTCTTGGTTTGATACTTATCTCTCCTCTATGCAGAGCACCGTCTTGGACTGAATGGTTGTACAATAAGGTTCCTTTTCTGAACTTGTCTACCATTAGTTCAAAAGAAAGAATCTTTGCCTGATAAAAAGCTTTGTATTTCTTATAGGTGATGTCAAATCTGCTTTACTTCTATGGCATGTGCAGTGTTGTAAAAGAAATGTTGCTTAAACGGTATTTTAGCAAGGTAAAAATCGCACTCAGCCTGTATTTACTATGCAATACGAGTATGTTTGTTTAACTAATTCCTTGTACTGAATCCTTTAACGGTGCACTAAAACTTCTGTTGCAGGAACTTCGGGGTAATTCTCTAGTACCAGAATCAGATATAGTTCAGGCATGTCGAAAAGTAAGTTCCTTGGCCATAGTGTCCTCATTTCTCGTTCTGAGCGTTTTTCCTCTTTTGATATGGAGTTTTCTGTCGGTGTTATATGTGAGTGGGAAGTTCTGTTTATTGGCTGTGGTGTGGAAGATACTGATATATTTTTTTTCTTCTCTTTGGCCCTATCAGTTGCTGGATGATAGAGAAAGTACTAATGTCATGCATTTTCTGGAGGCAATTAACAGGTACTGTCTTCCTCTTTTACTTTCTTGATTTTGACATGTTTCTAAAAATCAGGGTCACACGGATATGTTGCTGTTTACTTTTAATTCTCCATTATGGGTGTTTAGAAAACTTTAGAGGGTATTTTCTGGTACTGAATTTAATGTAGCTTTGCTTACAAACGAATAGTAAGTACTCCTCCACCATGACCAGTTGACCACTGTCATTGACAATGTTTCTCGGACTCGGATACTCATGTCCGACACGGGCACGTGTTCAAGTGTATGACTCGGCTAATTTTTTTTTTAAGTTCCATGATTTTGGCCCAAAATGAAGTGTCGAAGTGTCCATACTCATGGCCTGTAACAGAGTCGTGAGTCTCGTGATCCATCATTTAGGGTCTTAGGGATGGTGGGAAGTGTCCCTATTACACACTTTTCAACTGTCCTTTTAACTTAACTACTCCGTATTAATACTAAGATGTTTCCTTATAATTGTTGTTATGATCCATTATATTCCACGTCTGTGAATAAGCCTTTCCATGGTTCTGGCAAATTAAGTGGTGAAAAATCTGGTGTCCTTTTTATTGTTGCAACTAAAGTAGTACTCTCTATATCTGTGTCTTTGTCTTGACAAGTCATCAAATGTACTGGTTGTCTTCCTCGCTGTCACATTTAATAGTTTACGTACTCACAACTTTTCCTCTGTACACAGACGGACTGATATAAGCGAAGGACTGAAGAAACTACGATGTCGTTCACTAATATGTGTTGGAGAGGACTCATCTTTCCACTCAGAAGCAGTTCACATGGCCACAAAACTAGATAGAAGATTTAGTGCTTTAGTGGAGGTATCCTAATAGTTAGCCTATGACGTTAATGTTACTTAATCTTTTGTTGCGATCGTTCATAGAATGAAAAAATTGCAGGTTCAGGCATGCGGGTCTTTGGTAACAGAGGAGCAACCACAAGCTATGTTGATCCCTCTAGAATATTTCCTAATGGGCTATGGATTCTACAGACAATCATACAAGAGTTTGAGCCCGAGAAGCCCGTTAAGCCCATCTTGCATTTCTCCGGAACTGCTGTCACCCGAGAGCATGGGCCTAAAGTTGAAGCCCATCAAGACTCGTATCTCACTGGAGGTATAGTTCGAGGATTAATAGCAAGATAAGTAATTTGTAATCGTTATGATTATATACACGCAGTAATGCATCGTGTTAGGCAATTTTTTTTTTGGTTTGGTTAGAAATGAGTATGAGGTGGTATAGGAGGGGGGCTGTAGATAAAGATAAGAGAGAAAGAGCACAAATATAAAAATTATAGAAGACAGGACAGGTATTAAGATTAGTTTGGAAAGGTTAAGAGATTGAACATTTGTTAATTTTGTAATCATAGATTTTATTGGAGGGTTGAGTTGTGTAAATTGTTGGAATAAAATAATATCATTTATATCAAGGAAAGAAATAATAAGTGCAATTCTTTGAGGAAGGAGTAAATATTTTCTCTTTTCCTGATTCAAACCAATTTTCTTTGATGCCATGATTTTTGTTTGGGAGATCAGTTCATGTTAAGTGTTGTACTTCCATCGATCTTTGAGTACGGAGTAGTATTGGCTTATGAGCCTGTGGTTAGCGCGAGAATAACTTCCGTTCTTGGATGCTTGTTGGTGGTAACACTTTGGGTCATAATAAAGATGGTTATGTGCTGGGTCGGGCTACAGGCTGAGCCCACGTGTCGTGGCCAGAAAGAGCCGGCCACACCAATCCTACTATGCATTAAGCCGGGTCGTGCCGACTGAAAATTTCAAAATAGGGCCAGTTCCTGCCCATCCC TAAACTGACCTCATCACCTTCCTCCCCCAGCGTCGGTGACTCACTGCACTCTCTCACTCGCAGAGGAGAGAGAAAATAAATTTTAGTCGTTTATATAAAACCCCCACCTCACCGAACGCAAAAACCCCGAAATAAATTAAAAAATTTCCAAATATAGAGAGAAAAGTTGGAGAGAGAGAAATAATGGGAGATTCTAGCGACTCTATTTCTGTTCATATTGAATCGATCTCCATTGATAGCAAGGAATATTATGTTAAAACGGGTTCGGGTCCGGTGTCGGTAGCTGTTTATGGTGATCAAGATAAGCCAGCTCTTGTTACTTACCCAGATTTAGCTCTAAATTATGCTTCGTGTTTTCAAGGATTATTCTTGTGTCCCGAGGCGTTATCTTTGCTTGTTCACAACTTTTGCATCTACCATATCAGCCCTCCTGGCCATGAGTGGGGAGCTGCTCCAATAAGCTATGAATACGAGGCCTCCACGCCTTCCGTGGATGATTTGGCTGACCAGATAGTTGAGGTTCTTGACTACTTCGGGCTAGGCGAAGTTATGTGTATGGGAGTTACTGCTGGAGCATACATTTTAACCTTATTTGCGACGAAATATAAGCAGCGTGTTCTTGGTTTGATACTTATCTCTCCTCTATGCAGAGCACCGTCTTGGACTGAATGGTTGTACAATAAGGTGATGTCAAATCTGCTTTACTTCTATGGCATGTGCAGTGTTGTAAAAGAAATGTTGCTTAAACGGTATTTTAGCAAGGAACTTCGGGGTAATTCTCTAGTACCAGAATCAGATATAGTTCAGGCATGTCGAAAATTGCTGGATGATAGAGAAAGTACTAATGTCATGCATTTTCTGGAGGCAATTAACAGACGGACTGATATAAGCGAAGGACTGAAGAAACTACGATGTCGTTCACTAATATGTGTTGGAGAGGACTCATCTTTCCACTCAGAAGCAGTTCACATGGCCACAAAACTAGATAGAAGATTTAGTGCTTTAGTGGAGGTTCAGGCATGCGGGTCTTTGGTAACAGAGGAGCAACCACAAGCTATGTTGATCCCTCTAGAATATTTCCTAATGGGCTATGGATTCTACAGACAATCATACAAGAGTTTGAGCCCGAGAAGCCCGTTAAGCCCATCTTGCATTTCTCCGGAACTGCTGTCACCCGAGAGCATGGGCCTAAAGTTGAAGCCCATCAAGACTCGTATCTCACTGGAGGTATAGTTCGAGGATTAATAGCAAGATAAGTAATTTGTAATCGTTATGATTATATACACGCAGTAATGCATCGTGTTAGGCAATTTTTTTTTTGGTTTGGTTAGAAATGAGTATGAGGTGGTATAGGAGGGGGGCTGTAGATAAAGATAAGAGAGAAAGAGCACAAATATAAAAATTATAGAAGACAGGACAGGTATTAAGATTAGTTTGGAAAGGTTAAGAGATTGAACATTTGTTAATTTTGTAATCATAGATTTTATTGGAGGGTTGAGTTGTGTAAATTGTTGGAATAAAATAATATCATTTATATCAAGGAAAGAAATAATAAGTGCAATTCTTTGAGGAAGGAGTAAATATTTTCTCTTTTCCTGATTCAAACCAATTTTCTTTGATGCCATGATTTTTGTTTGGGAGATCAGTTCATGTTAAGTGTTGTACTTCCATCGATCTTTGAGTACGGAGTAGTATTGGCTTATGAGCCTGTGGTTAGCGCGAGAATAACTTCCGTTCTTGGATGCTTGTTGGTGGTAACACTTTGGGTCATAATAAAGATGGTTATGTGCTGGGTCGGGCTACAGGCTGAGCCCACGTGTCGTGGCCAGAAAGAGCCGGCCACACCAATCCTACTATGCATTAAGCCGGGTCGTGCCGACTGAAAATTTCAAAATAGGGCCAGTTCCTGCCCATCCC ATGGGAGATTCTAGCGACTCTATTTCTGTTCATATTGAATCGATCTCCATTGATAGCAAGGAATATTATGTTAAAACGGGTTCGGGTCCGGTGTCGGTAGCTGTTTATGGTGATCAAGATAAGCCAGCTCTTGTTACTTACCCAGATTTAGCTCTAAATTATGCTTCGTGTTTTCAAGGATTATTCTTGTGTCCCGAGGCGTTATCTTTGCTTGTTCACAACTTTTGCATCTACCATATCAGCCCTCCTGGCCATGAGTGGGGAGCTGCTCCAATAAGCTATGAATACGAGGCCTCCACGCCTTCCGTGGATGATTTGGCTGACCAGATAGTTGAGGTTCTTGACTACTTCGGGCTAGGCGAAGTTATGTGTATGGGAGTTACTGCTGGAGCATACATTTTAACCTTATTTGCGACGAAATATAAGCAGCGTGTTCTTGGTTTGATACTTATCTCTCCTCTATGCAGAGCACCGTCTTGGACTGAATGGTTGTACAATAAGGTGATGTCAAATCTGCTTTACTTCTATGGCATGTGCAGTGTTGTAAAAGAAATGTTGCTTAAACGGTATTTTAGCAAGGAACTTCGGGGTAATTCTCTAGTACCAGAATCAGATATAGTTCAGGCATGTCGAAAATTGCTGGATGATAGAGAAAGTACTAATGTCATGCATTTTCTGGAGGCAATTAACAGACGGACTGATATAAGCGAAGGACTGAAGAAACTACGATGTCGTTCACTAATATGTGTTGGAGAGGACTCATCTTTCCACTCAGAAGCAGTTCACATGGCCACAAAACTAGATAGAAGATTTAGTGCTTTAGTGGAGGTTCAGGCATGCGGGTCTTTGGTAACAGAGGAGCAACCACAAGCTATGTTGATCCCTCTAGAATATTTCCTAATGGGCTATGGATTCTACAGACAATCATACAAGAGTTTGAGCCCGAGAAGCCCGTTAAGCCCATCTTGCATTTCTCCGGAACTGCTGTCACCCGAGAGCATGGGCCTAAAGTTGAAGCCCATCAAGACTCGTATCTCACTGGAGGTATAG MGDSSDSISVHIESISIDSKEYYVKTGSGPVSVAVYGDQDKPALVTYPDLALNYASCFQGLFLCPEALSLLVHNFCIYHISPPGHEWGAAPISYEYEASTPSVDDLADQIVEVLDYFGLGEVMCMGVTAGAYILTLFATKYKQRVLGLILISPLCRAPSWTEWLYNKVMSNLLYFYGMCSVVKEMLLKRYFSKELRGNSLVPESDIVQACRKLLDDRESTNVMHFLEAINRRTDISEGLKKLRCRSLICVGEDSSFHSEAVHMATKLDRRFSALVEVQACGSLVTEEQPQAMLIPLEYFLMGYGFYRQSYKSLSPRSPLSPSCISPELLSPESMGLKLKPIKTRISLEV Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo14400.1 vs. NCBI nr
Match: gi|902213007|gb|KNA17151.1| (hypothetical protein SOVF_082770 [Spinacia oleracea]) HSP 1 Score: 700.3 bits (1806), Expect = 1.700e-198 Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 1
BLAST of Spo14400.1 vs. NCBI nr
Match: gi|731317554|ref|XP_010669253.1| (PREDICTED: pollen-specific protein SF21 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 650.2 bits (1676), Expect = 2.000e-183 Identity = 324/349 (92.84%), Postives = 335/349 (95.99%), Query Frame = 1
BLAST of Spo14400.1 vs. NCBI nr
Match: gi|731317552|ref|XP_010669252.1| (PREDICTED: pollen-specific protein SF21 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 645.6 bits (1664), Expect = 5.000e-182 Identity = 324/350 (92.57%), Postives = 335/350 (95.71%), Query Frame = 1
BLAST of Spo14400.1 vs. NCBI nr
Match: gi|728810020|gb|KHF99398.1| (Pollen-specific SF21 [Gossypium arboreum]) HSP 1 Score: 558.5 bits (1438), Expect = 8.100e-156 Identity = 279/349 (79.94%), Postives = 309/349 (88.54%), Query Frame = 1
BLAST of Spo14400.1 vs. NCBI nr
Match: gi|823228808|ref|XP_012447149.1| (PREDICTED: pollen-specific protein SF21-like [Gossypium raimondii]) HSP 1 Score: 556.2 bits (1432), Expect = 4.000e-155 Identity = 278/349 (79.66%), Postives = 308/349 (88.25%), Query Frame = 1
BLAST of Spo14400.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCC2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_082770 PE=4 SV=1) HSP 1 Score: 700.3 bits (1806), Expect = 1.200e-198 Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 1
BLAST of Spo14400.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D1H1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g033380 PE=4 SV=1) HSP 1 Score: 650.2 bits (1676), Expect = 1.400e-183 Identity = 324/349 (92.84%), Postives = 335/349 (95.99%), Query Frame = 1
BLAST of Spo14400.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MIX1_GOSAR (Pollen-specific SF21 OS=Gossypium arboreum GN=F383_19616 PE=4 SV=1) HSP 1 Score: 558.5 bits (1438), Expect = 5.600e-156 Identity = 279/349 (79.94%), Postives = 309/349 (88.54%), Query Frame = 1
BLAST of Spo14400.1 vs. UniProtKB/TrEMBL
Match: A0A0D2RU08_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G045800 PE=4 SV=1) HSP 1 Score: 556.2 bits (1432), Expect = 2.800e-155 Identity = 278/349 (79.66%), Postives = 308/349 (88.25%), Query Frame = 1
BLAST of Spo14400.1 vs. UniProtKB/TrEMBL
Match: A0A061GL37_THECC (N-MYC downregulated-like 2 isoform 1 OS=Theobroma cacao GN=TCM_037272 PE=4 SV=1) HSP 1 Score: 553.9 bits (1426), Expect = 1.400e-154 Identity = 275/349 (78.80%), Postives = 310/349 (88.83%), Query Frame = 1
BLAST of Spo14400.1 vs. ExPASy Swiss-Prot
Match: SF21_HELAN (Pollen-specific protein SF21 OS=Helianthus annuus GN=SF21 PE=2 SV=1) HSP 1 Score: 440.3 bits (1131), Expect = 2.000e-122 Identity = 219/346 (63.29%), Postives = 263/346 (76.01%), Query Frame = 1
BLAST of Spo14400.1 vs. ExPASy Swiss-Prot
Match: NDRG_DICDI (NDRG-like protein OS=Dictyostelium discoideum GN=DDB_G0270324 PE=3 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 1.900e-32 Identity = 82/272 (30.15%), Postives = 148/272 (54.41%), Query Frame = 1
BLAST of Spo14400.1 vs. ExPASy Swiss-Prot
Match: NDRG2_PANTR (Protein NDRG2 OS=Pan troglodytes GN=NDRG2 PE=2 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 1.900e-32 Identity = 100/308 (32.47%), Postives = 155/308 (50.32%), Query Frame = 1
BLAST of Spo14400.1 vs. ExPASy Swiss-Prot
Match: NDRG2_HUMAN (Protein NDRG2 OS=Homo sapiens GN=NDRG2 PE=1 SV=2) HSP 1 Score: 141.0 bits (354), Expect = 2.500e-32 Identity = 100/303 (33.00%), Postives = 152/303 (50.17%), Query Frame = 1
BLAST of Spo14400.1 vs. ExPASy Swiss-Prot
Match: NDRG2_BOVIN (Protein NDRG2 OS=Bos taurus GN=NDRG2 PE=2 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 3.300e-32 Identity = 97/308 (31.49%), Postives = 156/308 (50.65%), Query Frame = 1
BLAST of Spo14400.1 vs. TAIR (Arabidopsis)
Match: AT5G56750.1 (N-MYC downregulated-like 1) HSP 1 Score: 518.1 bits (1333), Expect = 4.300e-147 Identity = 254/346 (73.41%), Postives = 296/346 (85.55%), Query Frame = 1
BLAST of Spo14400.1 vs. TAIR (Arabidopsis)
Match: AT5G11790.1 (N-MYC downregulated-like 2) HSP 1 Score: 516.9 bits (1330), Expect = 9.500e-147 Identity = 257/347 (74.06%), Postives = 299/347 (86.17%), Query Frame = 1
BLAST of Spo14400.1 vs. TAIR (Arabidopsis)
Match: AT2G19620.1 (N-MYC downregulated-like 3) HSP 1 Score: 490.3 bits (1261), Expect = 9.500e-139 Identity = 234/341 (68.62%), Postives = 289/341 (84.75%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo14400.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo14400.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo14400.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo14400.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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