Spo14416.1 (mRNA) | SpinachBase

Overview


Name	Spo14416.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	60S ribosome subunit biogenesis protein NIP7 homolog
Location	chr1 : 35818940 .. 35820599 (-)
Sequence length	747

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAACCCTAGACGAGCAAGAAACCACCATCGTGTTCGAGAAACTCTTCAAGTTCGTCGGCAACAACCTCAAGAACATCGTCGACAATCCATCCTACGAAGGGCCCGCACAAGACCCGCTCCCAGGCCGGTACTGCTTCCGCCTCCAGAAGAATCGTGTGTACTACGCTAGTGAATCACTCGTGAAACGCGCAACAAACGTTTCGAAGGAGCTGCTGGTTTCACTGGGTGTACAAGTGGGGAAGTTCACCCACAGTGGGAACTTCCATCTGACAATTCACGCTCTATCTCTCTTGGCCCCGAATGCGAAGCACAAGGTATGGCTTAAACCGACCTCAGAGATGTCGTTTTTGTATGGGAATGCTGTGTTGAAGGCTCATTTAGGGAGGATTACTGAAGATATAAATGGTGGTGATGGTATTGTTGTTTATTCAATGTCTGATGTTCCTTTGGGTTTCGGAATCGCCACCAAATCGACCAAGGATGTTCGTAAATCAGACCCGCAAACTATGGTGGTCATTCATCAAGGTGATATTGGTGAGTATTTGAGGTTGGAGGATGAGCTTTGATTTGTTAGTGAAAGATGAATACAATGTTAAGTTATAATGTTAATGGCCTTGTTGTTTCGAAGCTTCGATTTTGAATTTTTATACAATGTTAAGTTACTGAAGTTTCAAGAGTTCGCTTGTTTGATGGATTTGGTGTTGGTGCTGGATATACAGTAATGGTGTAAAAATGGTATTTTTATGTCATGATTTGGGGTGCCACAGTGATCATTCTCACATTTTCTCCTCAGCTGATATGCAAAATCAAGGGGAAGATCACCTCAGATATGCATATCTCTAGTAACTTAGTAAGAGAATGCTGGGTTCACTATGGCGAACATTATTAATAGTGGTAGTTGATCTGAGGCTTGTACGGATTCAAAACAATGGGGATAAAACATGCGCGATCTCTAAGAAAATTTACTATTTTACTATCACATGTACGGATTCAAAACAATGGGGATAAAATATGCATGATTTCTATGAAATATTATTATTTTACTTCTAGTTTTAAAAAAGAGATATACTTTGACCGACATTTAGTTTTAGGAGAGTGAGTTGAATTTATTAAAATAAGATGAAAGTCGGATAGTGGATGAATTATTTATTACGGAGTATAATATAAGGATGATGCGAGTAAGTGCAGCGACCACGAGAAAGAGAGAAATATTAGTAGAAAAGCTTATCTCTTTTTAAAATACGGCCGTTTAAGGAAATGTATCTCTTTTTTAGTTTGTATTTTAAAATAAAGATGGAGTACCATTATATATACGGATTCAAAACAAAGGGATAGAACGTGCACGATCTCTATGAAAATTTACTATTTTACCCTAACATATACGTAATATGAAATAATTAGGGGTGAACGGAAGAGAGTAAAAACAAAAAAAAAAAAAAAGTTACAGACCTTCCATCTAGCCAAGAAGGAGGGGTGCTACCAGGGAACCAAATAGGCCTCTCTGGTTCAGCTGCAGCTGCGGAGACAGAGAAGGAGTTTGAGGAAACGGGTGTTCTGTATTTGCTGCTGTCTCTCAACTTCTTTCCTCCTAGGAATGATGCTCTTGTTGCTCCCAATACATTTCCTTTCTTCTGTGAACTGTTTCATTTTTTTTAA

mRNA sequence

ATGAGAACCCTAGACGAGCAAGAAACCACCATCGTGTTCGAGAAACTCTTCAAGTTCGTCGGCAACAACCTCAAGAACATCGTCGACAATCCATCCTACGAAGGGCCCGCACAAGACCCGCTCCCAGGCCGGTACTGCTTCCGCCTCCAGAAGAATCGTGTGTACTACGCTAGTGAATCACTCGTGAAACGCGCAACAAACGTTTCGAAGGAGCTGCTGGTTTCACTGGGTGTACAAGTGGGGAAGTTCACCCACAGTGGGAACTTCCATCTGACAATTCACGCTCTATCTCTCTTGGCCCCGAATGCGAAGCACAAGGTATGGCTTAAACCGACCTCAGAGATGTCGTTTTTGTATGGGAATGCTGTGTTGAAGGCTCATTTAGGGAGGATTACTGAAGATATAAATGGTGGTGATGGTATTGTTGTTTATTCAATGTCTGATGTTCCTTTGGGTTTCGGAATCGCCACCAAATCGACCAAGGATGTTCGTAAATCAGACCCGCAAACTATGGTGGTCATTCATCAAGGTGATATTGACCTTCCATCTAGCCAAGAAGGAGGGGTGCTACCAGGGAACCAAATAGGCCTCTCTGGTTCAGCTGCAGCTGCGGAGACAGAGAAGGAGTTTGAGGAAACGGGTGTTCTGTATTTGCTGCTGTCTCTCAACTTCTTTCCTCCTAGGAATGATGCTCTTGTTGCTCCCAATACATTTCCTTTCTTCTGTGAACTGTTTCATTTTTTTTAA

Coding sequence (CDS)

ATGAGAACCCTAGACGAGCAAGAAACCACCATCGTGTTCGAGAAACTCTTCAAGTTCGTCGGCAACAACCTCAAGAACATCGTCGACAATCCATCCTACGAAGGGCCCGCACAAGACCCGCTCCCAGGCCGGTACTGCTTCCGCCTCCAGAAGAATCGTGTGTACTACGCTAGTGAATCACTCGTGAAACGCGCAACAAACGTTTCGAAGGAGCTGCTGGTTTCACTGGGTGTACAAGTGGGGAAGTTCACCCACAGTGGGAACTTCCATCTGACAATTCACGCTCTATCTCTCTTGGCCCCGAATGCGAAGCACAAGGTATGGCTTAAACCGACCTCAGAGATGTCGTTTTTGTATGGGAATGCTGTGTTGAAGGCTCATTTAGGGAGGATTACTGAAGATATAAATGGTGGTGATGGTATTGTTGTTTATTCAATGTCTGATGTTCCTTTGGGTTTCGGAATCGCCACCAAATCGACCAAGGATGTTCGTAAATCAGACCCGCAAACTATGGTGGTCATTCATCAAGGTGATATTGACCTTCCATCTAGCCAAGAAGGAGGGGTGCTACCAGGGAACCAAATAGGCCTCTCTGGTTCAGCTGCAGCTGCGGAGACAGAGAAGGAGTTTGAGGAAACGGGTGTTCTGTATTTGCTGCTGTCTCTCAACTTCTTTCCTCCTAGGAATGATGCTCTTGTTGCTCCCAATACATTTCCTTTCTTCTGTGAACTGTTTCATTTTTTTTAA

Protein sequence

MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASESLVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYGNAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIDLPSSQEGGVLPGNQIGLSGSAAAAETEKEFEETGVLYLLLSLNFFPPRNDALVAPNTFPFFCELFHFF

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo14416	Spo14416	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo14416.1	Spo14416.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo14416.1.CDS.2	Spo14416.1.CDS.2	CDS
Spo14416.1.CDS.1	Spo14416.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo14416.1.exon.2	Spo14416.1.exon.2	exon
Spo14416.1.exon.1	Spo14416.1.exon.1	exon

Homology

[Close]

BLAST of Spo14416.1 vs. NCBI nr
Match: gi|902186883|gb|KNA10804.1| (hypothetical protein SOVF_140980 [Spinacia oleracea])

HSP 1 Score: 360.5 bits (924), Expect = 2.300e-96
Identity = 177/179 (98.88%), Postives = 178/179 (99.44%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKELLVSLGVQVGKFTH+GNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 180
           NAVLKAHLGRITEDIN GDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI
Sbjct: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 179

[Close]

BLAST of Spo14416.1 vs. NCBI nr
Match: gi|902227647|gb|KNA20771.1| (hypothetical protein SOVF_049390 [Spinacia oleracea])

HSP 1 Score: 359.8 bits (922), Expect = 3.900e-96
Identity = 176/179 (98.32%), Postives = 178/179 (99.44%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKELLVSLGVQVGKFTH+GNFHLTIHALS+LAPNAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSILAPNAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 180
           NAVLKAHLGRITEDIN GDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI
Sbjct: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 179

[Close]

BLAST of Spo14416.1 vs. NCBI nr
Match: gi|731314461|ref|XP_010686698.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 334.7 bits (857), Expect = 1.400e-88
Identity = 164/179 (91.62%), Postives = 168/179 (93.85%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETT VFEKLFKFVGNNLKNIVDNPSYEGP QDP P RYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTTVFEKLFKFVGNNLKNIVDNPSYEGPGQDPSPRRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKE LVSLGVQVGKFTH G+FHLTIHAL LLA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKEKLVSLGVQVGKFTHHGSFHLTIHALPLLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 180
           N++LKAHLGRITEDIN GDGIVVYSMSD+PLGFGIATKSTKDVRKSDPQ MVVIHQ DI
Sbjct: 121 NSILKAHLGRITEDINAGDGIVVYSMSDLPLGFGIATKSTKDVRKSDPQVMVVIHQADI 179

[Close]

BLAST of Spo14416.1 vs. NCBI nr
Match: gi|731314463|ref|XP_010686700.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 334.0 bits (855), Expect = 2.300e-88
Identity = 164/179 (91.62%), Postives = 168/179 (93.85%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETT VFEKLFKFVGNNLKNIVDNPSYEGP QDP P RYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTTVFEKLFKFVGNNLKNIVDNPSYEGPGQDPGPRRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKE LVSLGVQVGKFTH G+FHLTIHAL LLA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKEKLVSLGVQVGKFTHHGSFHLTIHALPLLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 180
           N++LKAHLGRITEDIN GDGIVVYSMSD+PLGFGIATKSTKDVRKSDPQ MVVIHQ DI
Sbjct: 121 NSILKAHLGRITEDINAGDGIVVYSMSDLPLGFGIATKSTKDVRKSDPQVMVVIHQADI 179

[Close]

BLAST of Spo14416.1 vs. NCBI nr
Match: gi|731314513|ref|XP_010686892.1| (PREDICTED: LOW QUALITY PROTEIN: 60S ribosome subunit biogenesis protein NIP7 homolog [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 332.8 bits (852), Expect = 5.100e-88
Identity = 163/179 (91.06%), Postives = 167/179 (93.30%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETT VFEKLFKFVGNNLKNIVDNPSYEGPAQDP P RYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTTVFEKLFKFVGNNLKNIVDNPSYEGPAQDPSPRRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKE LVSLGVQVGKFTH G+FHLTIHA   LA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKEKLVSLGVQVGKFTHHGSFHLTIHATPFLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 180
           N++LKAHLGRITEDIN GDGIVVYSMSD+PLGFGIATKSTKDVRKSDPQ MVVIHQ DI
Sbjct: 121 NSILKAHLGRITEDINAGDGIVVYSMSDLPLGFGIATKSTKDVRKSDPQVMVVIHQADI 179

[Close]

BLAST of Spo14416.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU63_SPIOL (60S ribosome subunit biogenesis protein NIP7 homolog OS=Spinacia oleracea GN=SOVF_140980 PE=3 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 1.600e-96
Identity = 177/179 (98.88%), Postives = 178/179 (99.44%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKELLVSLGVQVGKFTH+GNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 180
           NAVLKAHLGRITEDIN GDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI
Sbjct: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 179

[Close]

BLAST of Spo14416.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMM2_SPIOL (60S ribosome subunit biogenesis protein NIP7 homolog OS=Spinacia oleracea GN=SOVF_049390 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 2.700e-96
Identity = 176/179 (98.32%), Postives = 178/179 (99.44%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKELLVSLGVQVGKFTH+GNFHLTIHALS+LAPNAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSILAPNAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 180
           NAVLKAHLGRITEDIN GDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI
Sbjct: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 179

[Close]

BLAST of Spo14416.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D4Y2_BETVU (60S ribosome subunit biogenesis protein NIP7 homolog OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g014050 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 9.400e-89
Identity = 164/179 (91.62%), Postives = 168/179 (93.85%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETT VFEKLFKFVGNNLKNIVDNPSYEGP QDP P RYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTTVFEKLFKFVGNNLKNIVDNPSYEGPGQDPSPRRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKE LVSLGVQVGKFTH G+FHLTIHAL LLA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKEKLVSLGVQVGKFTHHGSFHLTIHALPLLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 180
           N++LKAHLGRITEDIN GDGIVVYSMSD+PLGFGIATKSTKDVRKSDPQ MVVIHQ DI
Sbjct: 121 NSILKAHLGRITEDINAGDGIVVYSMSDLPLGFGIATKSTKDVRKSDPQVMVVIHQADI 179

[Close]

BLAST of Spo14416.1 vs. UniProtKB/TrEMBL
Match: A0A078F8S2_BRANA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Brassica napus GN=BnaC07g33200D PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 9.500e-73
Identity = 137/179 (76.54%), Postives = 156/179 (87.15%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR LDE ETT+VFEK+FKFVGNNLKNIV+NPS+EGP  DP  GRYCFRLQKNRVYYASES
Sbjct: 1   MRPLDENETTVVFEKIFKFVGNNLKNIVENPSHEGPESDP--GRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATN+S++ LVSLG  +GK+TH+G+FHLTI +L+LLA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNISRKSLVSLGTCIGKYTHAGSFHLTIMSLNLLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 180
           N VLK  LGRIT+ I  GDG+VV+SMSDVPLGFGIA KST+D RK DP  +VV+HQ DI
Sbjct: 121 NHVLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADI 177

[Close]

BLAST of Spo14416.1 vs. UniProtKB/TrEMBL
Match: A0A0D3DEA0_BRAOL (60S ribosome subunit biogenesis protein NIP7 homolog OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 9.500e-73
Identity = 137/179 (76.54%), Postives = 156/179 (87.15%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR LDE ETT+VFEK+FKFVGNNLKNIV+NPS+EGP  DP  GRYCFRLQKNRVYYASES
Sbjct: 1   MRPLDENETTVVFEKIFKFVGNNLKNIVENPSHEGPESDP--GRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATN+S++ LVSLG  +GK+TH+G+FHLTI +L+LLA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNISRKSLVSLGTCIGKYTHAGSFHLTIMSLNLLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 180
           N VLK  LGRIT+ I  GDG+VV+SMSDVPLGFGIA KST+D RK DP  +VV+HQ DI
Sbjct: 121 NHVLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADI 177

[Close]

BLAST of Spo14416.1 vs. ExPASy Swiss-Prot
Match: NIP7_RAT (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus GN=Nip7 PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.200e-50
Identity = 99/179 (55.31%), Postives = 125/179 (69.83%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR L E+ET ++FEK+ K++G NL+ +VD P           G YCFRL  +RVYY SE 
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD----------GTYCFRLHNDRVYYVSEM 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           ++K A N+S + LVSLG   GKFT +  F L + AL  LAP AK+KVW+KP +E SFLYG
Sbjct: 61  ILKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 180
           N VLK+ LGRITE+ +   G+VVYSM+DVPLGFG+A KST+D RK DP  +VV HQ DI
Sbjct: 121 NHVLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADI 169

[Close]

BLAST of Spo14416.1 vs. ExPASy Swiss-Prot
Match: NIP7_HUMAN (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens GN=NIP7 PE=1 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 9.500e-50
Identity = 98/179 (54.75%), Postives = 125/179 (69.83%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR L E+ET ++FEK+ K++G NL+ +VD P           G YCFRL  +RVYY SE 
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD----------GTYCFRLHNDRVYYVSEK 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           ++K A N+S + LVSLG   GKFT +  F L + AL  LAP AK+KVW+KP +E SFLYG
Sbjct: 61  IMKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 180
           N VLK+ LGRITE+ +   G+VVYSM+D+PLGFG+A KST+D RK DP  +VV HQ DI
Sbjct: 121 NHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADI 169

[Close]

BLAST of Spo14416.1 vs. ExPASy Swiss-Prot
Match: NIP7_PONAB (60S ribosome subunit biogenesis protein NIP7 homolog OS=Pongo abelii GN=NIP7 PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 9.500e-50
Identity = 98/179 (54.75%), Postives = 125/179 (69.83%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR L E+ET ++FEK+ K++G NL+ +VD P           G YCFRL  +RVYY SE 
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD----------GTYCFRLHNDRVYYVSEK 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           ++K A N+S + LVSLG   GKFT +  F L + AL  LAP AK+KVW+KP +E SFLYG
Sbjct: 61  IMKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 180
           N VLK+ LGRITE+ +   G+VVYSM+D+PLGFG+A KST+D RK DP  +VV HQ DI
Sbjct: 121 NHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADI 169

[Close]

BLAST of Spo14416.1 vs. ExPASy Swiss-Prot
Match: NIP7_MOUSE (60S ribosome subunit biogenesis protein NIP7 homolog OS=Mus musculus GN=Nip7 PE=1 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.600e-49
Identity = 98/179 (54.75%), Postives = 125/179 (69.83%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR L E+ET ++FEK+ K++G NL+ +VD P           G YCFRL  +RVYY SE 
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD----------GTYCFRLHNDRVYYVSEM 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           ++K A N+S + LVSLG   GKFT +  F L + AL  LAP AK+KVW+KP +E SFLYG
Sbjct: 61  MLKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 180
           N VLK+ LGRITE+ +   G+VVYSM+D+PLGFG+A KST+D RK DP  +VV HQ DI
Sbjct: 121 NHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADI 169

[Close]

BLAST of Spo14416.1 vs. ExPASy Swiss-Prot
Match: NIP7_PIG (60S ribosome subunit biogenesis protein NIP7 homolog OS=Sus scrofa GN=NIP7 PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.600e-49
Identity = 98/179 (54.75%), Postives = 125/179 (69.83%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR L E+ET ++FEK+ K++G NL+ +VD P           G YCFRL  +RVYY SE 
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD----------GTYCFRLHNDRVYYVSEK 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           ++K A N+S + L+SLG   GKFT +  F L I AL  LAP AK+KVW+KP +E SFLYG
Sbjct: 61  ILKLAANISGDKLMSLGTCFGKFTKTHKFRLHITALDYLAPYAKYKVWIKPGAEQSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 180
           N VLK+ LGRITE+ +   G+VVYSM+D+PLGFG+A KST+D RK DP  +VV HQ DI
Sbjct: 121 NHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADI 169

[Close]

BLAST of Spo14416.1 vs. TAIR (Arabidopsis)
Match: AT4G15770.1 (RNA binding)

HSP 1 Score: 267.7 bits (683), Expect = 7.200e-72
Identity = 131/179 (73.18%), Postives = 151/179 (84.36%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR LDE ETT+VFEKLFKFVGNNLK IV+NPS EGP  +  PG YCFRLQKNRVYY SE+
Sbjct: 1   MRPLDETETTVVFEKLFKFVGNNLKKIVENPSDEGP--ESTPGSYCFRLQKNRVYYVSEA 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATN+S++ LVS G  +GK+TH+G+FHLTI +L++LA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNISRKNLVSFGTCIGKYTHAGSFHLTIMSLNILAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDI 180
           N VLK  LGRIT+ I  GDG+VV+SMSDVPLGFGIA KST+D RK DP  +VV+HQ DI
Sbjct: 121 NHVLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADI 177

The following BLAST results are available for this feature:

BLAST of Spo14416.1 vs. NCBI nr
BLAST of Spo14416.1 vs. UniProtKB/TrEMBL
BLAST of Spo14416.1 vs. ExPASy Swiss-Prot
BLAST of Spo14416.1 vs. TAIR (Arabidopsis)

BLAST of Spo14416.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902186883\|gb\|KNA10804.1\|	2.3e-96	98.8	hypothetical protein SOVF_1409...	[more]
gi\|902227647\|gb\|KNA20771.1\|	3.9e-96	98.3	hypothetical protein SOVF_0493...	[more]
gi\|731314461\|ref\|XP_010686698.1\|	1.4e-88	91.6	PREDICTED: 60S ribosome subuni...	[more]
gi\|731314463\|ref\|XP_010686700.1\|	2.3e-88	91.6	PREDICTED: 60S ribosome subuni...	[more]
gi\|731314513\|ref\|XP_010686892.1\|	5.1e-88	91.0	PREDICTED: LOW QUALITY PROTEIN...	[more]

BLAST of Spo14416.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QU63_SPIOL	1.6e-96	98.8	60S ribosome subunit biogenesi...	[more]
A0A0K9RMM2_SPIOL	2.7e-96	98.3	60S ribosome subunit biogenesi...	[more]
A0A0J8D4Y2_BETVU	9.4e-89	91.6	60S ribosome subunit biogenesi...	[more]
A0A078F8S2_BRANA	9.5e-73	76.5	60S ribosome subunit biogenesi...	[more]
A0A0D3DEA0_BRAOL	9.5e-73	76.5	60S ribosome subunit biogenesi...	[more]

BLAST of Spo14416.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
NIP7_RAT	7.2e-50	55.3	60S ribosome subunit biogenesi...	[more]
NIP7_HUMAN	9.5e-50	54.7	60S ribosome subunit biogenesi...	[more]
NIP7_PONAB	9.5e-50	54.7	60S ribosome subunit biogenesi...	[more]
NIP7_MOUSE	1.6e-49	54.7	60S ribosome subunit biogenesi...	[more]
NIP7_PIG	1.6e-49	54.7	60S ribosome subunit biogenesi...	[more]

BLAST of Spo14416.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT4G15770.1	7.2e-72	73.1	RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 105..180 score: 1.
IPR002478	PUA domain	PROFILE	PS50890	PUA	coord: 104..180 score: 12
IPR005155	Ribosome biogenesis factor NIP7-like	PFAM	PF03657	UPF0113	coord: 51..159 score: 4.
IPR015947	PUA-like domain	GENE3D	2.30.130.10		coord: 104..180 score: 3.1
IPR015947	PUA-like domain	unknown	SSF88697	PUA domain-like	coord: 105..179 score: 2.05
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..179 score: 2.5
None	No IPR available	PANTHER	PTHR23415:SF4	60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOG	coord: 1..179 score: 2.5
None	No IPR available	unknown	SSF88802	Pre-PUA domain	coord: 1..103 score: 4.18

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042255	ribosome assembly
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding