Spo14429.1 (mRNA)

Overview
NameSpo14429.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01138 : 203966 .. 206030 (+)
Sequence length1034
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCCTCTCAAGCCACTGTGTGATACAGTCCGTAGAGTATATATGAGCACAGGGTAACCTTATCACCTCCACACCTTCTCCAATCTTTTCCAAACAAATCGAACATTCCCTCTCCTCCCCAAACTCTGTAACTCTCCTCTCTAAATGTCTTTGTTGTAGTATCTACTGATAGGTGCCTTTCAATTTGTAAATGTCTTTCAGATCATTGTTGCTTGCTGCTTGCTGCTTTGAGGCAGTTGTTTATTGCAAAGAATATAGGTGACTTAATTCATTCCTCAGTCTATATAATATGAAACATGTTTTAATCTAAGTGAGACCTTTCTGAATTAGTCCCTGAAGATCTTGTTTCATCCATTCTTTAGGTTGCGATGTCATTAATTTGGGGATGGGTAATGGTGCTTTCAGTGCTTGAAACGGTCAAGGCATTTGAGAAGGCAACAGGAAAGGTAATATTCTGTTTCATTTTTGTCTTAATTAGTCTCATAACTATACAATTCCTGTTATATGTGTTTTTATTTATATGATTTATGCAGAGTTACTTATTATGCGGTATGTTAGAATCAGAATGCATGATATCACTTGTTAATCAGTGTGCTTATGTTTGATTATACTTAATCAGTGTGCAAAGAAAAGGTTCCAGGTAAATAAACCGTTCATCCAAGAATACATTTTCAGGTGTTACTTTTTATTATGTTTAAGATGAAATTTTGATGAGCAACTGGAAAATTAATACACTGGAAAATGAACTTTGATTGATACACTGGAAAATTACAGAAATGAAGGTTAGATTCCAAGCATTCGAGTGGCTTGGAAGTGTTGGCACACTCCCAAGATAATACACTAAAAGTAAATTTAACTTCATAATCTTTAGTCTTATTGATTATTTAATCTGAGAGAGGGAAGGATGGACAAAGCGTTATTAATAATTAATAATGATCTAATATATTGAACTCAAACCCTGTGTTGTTTCTGTACATTTGAATCTTATGCATTCCGTCCCTTCATTTTTGGGCATATAATTTATTTTTATATTTTTTTTGGGAAAGAACTTAGTTCCTTAAATCATCGGATGAAATGATGAATACTCAAAGTCAATGTAGCATTGTTGTAGCATTGTTTTTGCCCCGTCTAGCTTCACTCAAACTTCTTTTAACATTTCTTTCTGTGTGCAGCCTGGACAGAGTTCAGAGCATCAACGTCAGATGACGTTGCTAGAATCTGGTACCCCAGGAGTCCCTCCTTTTGGTGCTTTGAGTTCTGGCTTCACTAATCACTAACCAGACTGCTTCTCCACCTATTCAAGCATATGCTGGCCACCACCACCAACAACATCCGATGCCACAGCATTGGTAATCCTCATCATTCGCATTTTCCAAGACAGAATCACACTGCCACTCCAGAGCAACAAGCCTTTATGCGTCTTCAAAGAGACCGGAAGATTCAGCAAAGACTGTTGCAGCGGCAGCAACAACAACAACAGCAAGAGCTTCCCGCATTAGGTGCATTGATGACACATGCCCAAACTCCTTCCCAGCTACCTGCATCATCTTCTGTGCAGAATGCTTACCAGAATTACCAACTGCTTCTCAGCCGAATTCATCCTAATTTCTCTCAGGCTCCCATTTGATGTAATTTCTTCTTCTTTTTCTTCCTCTCTTTTTTTTTCCTATTAATTTTTTTTTATAATGACAGAGGCTTTCGAGAATTTCGAGCACATGTTTTCTTTTGTGTAGTTTGTGTTTGCTTGCTTGATGGTTTTACTTGATGATCCTCTTTATCGGTAGAGTGTTTAATGGGAAAAAGAGAGCTAGAAGAGTAGATATGTTACTCTGCTAATAAAGTGTGACTGATATGTTGCGATCTTGAGAGGACAATCCCAATCTTGCGATCTTGAGATTAGACTTCGTTTGATAGGTGATTACCTGAGCGTTGCCTTTATAGCCTCCTTTTACGGTGCGACGGTTGGTCAACGTCAAAGTAAGCAGTTCTCAAACAAGTAATCTCAAATCACTCAGGTATTGAGGATTTAGTGTCTAATAATTTTAATGAAATTTACTTATGA

mRNA sequence

ATGAGTCCTCTCAAGCCACTGTGTGATACAGTCCGTAGAGTTGCGATGTCATTAATTTGGGGATGGGTAATGGTGCTTTCAGTGCTTGAAACGGTCAAGGCATTTGAGAAGGCAACAGGAAAGTGTGCAAAGAAAAGGTTCCAGCCTGGACAGAGTTCAGAGCATCAACGTCAGATGACGTTGCTAGAATCTGGTACCCCAGGAGTCCCTCCTTTTGGTGCTTTGAGTTCTGGCTTCACTAATCACTAACCAGACTGCTTCTCCACCTATTCAAGCATATGCTGGCCACCACCACCAACAACATCCGATGCCACAGCATTGGTAATCCTCATCATTCGCATTTTCCAAGACAGAATCACACTGCCACTCCAGAGCAACAAGCCTTTATGCGTCTTCAAAGAGACCGGAAGATTCAGCAAAGACTGTTGCAGCGGCAGCAACAACAACAACAGCAAGAGCTTCCCGCATTAGGTGCATTGATGACACATGCCCAAACTCCTTCCCAGCTACCTGCATCATCTTCTGTGCAGAATGCTTACCAGAATTACCAACTGCTTCTCAGCCGAATTCATCCTAATTTCTCTCAGGCTCCCATTTGATGTAATTTCTTCTTCTTTTTCTTCCTCTCTTTTTTTTTCCTATTAATTTTTTTTTATAATGACAGAGGCTTTCGAGAATTTCGAGCACATGTTTTCTTTTGTGTAGTTTGTGTTTGCTTGCTTGATGGTTTTACTTGATGATCCTCTTTATCGGTAGAGTGTTTAATGGGAAAAAGAGAGCTAGAAGAGTAGATATGTTACTCTGCTAATAAAGTGTGACTGATATGTTGCGATCTTGAGAGGACAATCCCAATCTTGCGATCTTGAGATTAGACTTCGTTTGATAGGTGATTACCTGAGCGTTGCCTTTATAGCCTCCTTTTACGGTGCGACGGTTGGTCAACGTCAAAGTAAGCAGTTCTCAAACAAGTAATCTCAAATCACTCAGGTATTGAGGATTTAGTGTCTAATAATTTTAATGAAATTTACTTATGA

Coding sequence (CDS)

ATGAGTCCTCTCAAGCCACTGTGTGATACAGTCCGTAGAGTTGCGATGTCATTAATTTGGGGATGGGTAATGGTGCTTTCAGTGCTTGAAACGGTCAAGGCATTTGAGAAGGCAACAGGAAAGTGTGCAAAGAAAAGGTTCCAGCCTGGACAGAGTTCAGAGCATCAACGTCAGATGACGTTGCTAGAATCTGGTACCCCAGGAGTCCCTCCTTTTGGTGCTTTGAGTTCTGGCTTCACTAATCACTAA

Protein sequence

MSPLKPLCDTVRRVAMSLIWGWVMVLSVLETVKAFEKATGKCAKKRFQPGQSSEHQRQMTLLESGTPGVPPFGALSSGFTNH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo14429Spo14429gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo14429.1Spo14429.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14429.1.exon.1Spo14429.1.exon.1exon
Spo14429.1.exon.2Spo14429.1.exon.2exon
Spo14429.1.exon.3Spo14429.1.exon.3exon
Spo14429.1.exon.4Spo14429.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14429.1.CDS.1Spo14429.1.CDS.1CDS
Spo14429.1.CDS.2Spo14429.1.CDS.2CDS
Spo14429.1.CDS.3Spo14429.1.CDS.3CDS
Spo14429.1.CDS.4Spo14429.1.CDS.4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14429.1.utr3p.1Spo14429.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo14429.1 vs. NCBI nr
Match: gi|902210851|gb|KNA16554.1| (hypothetical protein SOVF_088110 [Spinacia oleracea])

HSP 1 Score: 67.8 bits (164), Expect = 1.000e-8
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1 

		  

Query: 48   QPGQSSEHQRQMTLLESGTPGVPPFGALSSGFTN 82
            +PGQSSEHQRQMTL ESG+PGVPPFGALSSGFTN
Sbjct: 1399 RPGQSSEHQRQMTLPESGSPGVPPFGALSSGFTN 1432
[Close]
BLAST of Spo14429.1 vs. NCBI nr
Match: gi|731347499|ref|XP_010685017.1| (PREDICTED: uncharacterized protein LOC104899514 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.8 bits (146), Expect = 1.200e-6
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 

		  

Query: 48   QPGQSSEHQRQMTLLESGTPGVPPFGALSSGFTN 82
            +PGQ+S+HQRQM L ES +PGVPPFGA+SSGFTN
Sbjct: 1417 RPGQNSDHQRQMMLAESSSPGVPPFGAMSSGFTN 1450
[Close]
BLAST of Spo14429.1 vs. NCBI nr
Match: gi|870853759|gb|KMT05626.1| (hypothetical protein BVRB_7g167650 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.8 bits (146), Expect = 1.200e-6
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 

		  

Query: 48   QPGQSSEHQRQMTLLESGTPGVPPFGALSSGFTN 82
            +PGQ+S+HQRQM L ES +PGVPPFGA+SSGFTN
Sbjct: 1414 RPGQNSDHQRQMMLAESSSPGVPPFGAMSSGFTN 1447
[Close]
BLAST of Spo14429.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RC07_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088110 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.100e-9
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1 

		  

Query: 48   QPGQSSEHQRQMTLLESGTPGVPPFGALSSGFTN 82
            +PGQSSEHQRQMTL ESG+PGVPPFGALSSGFTN
Sbjct: 1399 RPGQSSEHQRQMTLPESGSPGVPPFGALSSGFTN 1432
[Close]
BLAST of Spo14429.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ERC4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g167650 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.700e-7
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 

		  

Query: 48   QPGQSSEHQRQMTLLESGTPGVPPFGALSSGFTN 82
            +PGQ+S+HQRQM L ES +PGVPPFGA+SSGFTN
Sbjct: 1414 RPGQNSDHQRQMMLAESSSPGVPPFGAMSSGFTN 1447
[Close]
BLAST of Spo14429.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BVJ6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g167650 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.700e-7
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 

		  

Query: 48   QPGQSSEHQRQMTLLESGTPGVPPFGALSSGFTN 82
            +PGQ+S+HQRQM L ES +PGVPPFGA+SSGFTN
Sbjct: 1417 RPGQNSDHQRQMMLAESSSPGVPPFGAMSSGFTN 1450
The following BLAST results are available for this feature:
BLAST of Spo14429.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902210851|gb|KNA16554.1|1.0e-891.1hypothetical protein SOVF_0881... [more]
gi|731347499|ref|XP_010685017.1|1.2e-676.4PREDICTED: uncharacterized pro... [more]
gi|870853759|gb|KMT05626.1|1.2e-676.4hypothetical protein BVRB_7g16... [more]
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BLAST of Spo14429.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9RC07_SPIOL7.1e-991.1Uncharacterized protein OS=Spi... [more]
A0A0J8ERC4_BETVU8.7e-776.4Uncharacterized protein OS=Bet... [more]
A0A0J8BVJ6_BETVU8.7e-776.4Uncharacterized protein OS=Bet... [more]
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BLAST of Spo14429.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo14429.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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