Spo14433.1 (mRNA)

Overview
NameSpo14433.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01138 : 18406 .. 19575 (-)
Sequence length596
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCTGTTATTGAGTGATATACCCTCCCATTAACCAGGCCTAAAACATACTTTATCCCTCCTCTACCTTCCTGTTTTCTTTTTCTCTTTCTCTCTCCTCCATTTTCACGCAGGAATGCAGCGTCATATAAGTCTTCACGGCCTTTCCCGTACAGAAGACTCTCGATTGAATCAGCAATGGCNCAGCGTCATATAAGTCTTCACGGCCTTTCCCGTACAGAAGACTCTCGATTGAATCAGCAATGGCGATCAAGAGTCGAGATTATAATAAATCAAAACACATACAGATCCGTCTACCATTTTCATGATGGAAGGTCAAAAGCAGTCAACAATGGCGAAGCGGCGACGAAGACGAGAAATCGATCAACTTGGTGATTGTGTCGAATTAGGTCGAAATCACTCACGAAGCAGTACGAACCGGGCCTCCACCGTAGTAGGTTTAGTACTTCGTATTATTTTTATGAATTATTTAATCCGTTTCATATACCCCTACAGGACTTTGCGTACACAATGCCTCTGGTTGTTCATTTTTATTTATCCATTTATGAAGCACATTTTTTTGAATTGTCATTTGTGCAACTTAAAACATAATGCAGCTGGAGTTTAGTTTCATGTTGAATAACTATTTTTTTTAATACAAATAGGTTTGTTTATTAACGATTCGTTATGGTTTTTGAATATTTAAATCTTTTAGAGCCTCATAGCATAATGTTGCTGGAGTATAACATCATTTTGAATAACTAACTTTTTCTTCTTGTTACCTCTGTTCTCAATGGGGACAGTAACTTTATCTCCCACTAATATGGGCGGGTTCAATTTGGTTGTAGCAGGCGACGATGACCCGGCACAGAAAGAGCGTGGGGAAAAGAGGAAGCGCGGGACCAGAGCCACCACGCAACTGAAGGCTCCTACAGCACCAGGGGAAAAGAGGGGTGCGGGGAGACCCAGAGTAGCCTGCGAAAAACCCGAGGGATCCAGTAATGGTCTTCAATTACTGAGTATAATTAATCCAGTTTATTGATTTGAATTTCTTATTGAAAACTAAATATTGCATTTTCTAAACAGAGATGAATTTGGGATGGTATTAATATTTAATAGTGTTACTGTGTTAGTTAATGATATTTACTAATCCATGTTTGTTTGGACATGTTGATGCAGCCTTATACCTGTAG

mRNA sequence

CCCTGTTATTGAGTGATATACCCTCCCATTAACCAGGCCTAAAACATACTTTATCCCTCCTCTACCTTCCTGTTTTCTTTTTCTCTTTCTCTCTCCTCCATTTTCACGCAGGAATGCAGCGTCATATAAGTCTTCACGGCCTTTCCCGTACAGAAGACTCTCGATTGAATCAGCAATGGCNCAGCGTCATATAAGTCTTCACGGCCTTTCCCGTACAGAAGACTCTCGATTGAATCAGCAATGGCGATCAAGAGTCGAGATTATAATAAATCAAAACACATACAGATCCGTCTACCATTTTCATGATGGAAGGTCAAAAGCAGTCAACAATGGCGAAGCGGCGACGAAGACGAGAAATCGATCAACTTGGTGATTGTGTCGAATTAGGTCGAAATCACTCACGAAGCAGTACGAACCGGGCCTCCACCGTAGTAGGCGACGATGACCCGGCACAGAAAGAGCGTGGGGAAAAGAGGAAGCGCGGGACCAGAGCCACCACGCAACTGAAGGCTCCTACAGCACCAGGGGAAAAGAGGGGTGCGGGGAGACCCAGAGTAGCCTGCGAAAAACCCGAGGGATCCACCTTATACCTGTAG

Coding sequence (CDS)

ATGATGGAAGGTCAAAAGCAGTCAACAATGGCGAAGCGGCGACGAAGACGAGAAATCGATCAACTTGGTGATTGTGTCGAATTAGGTCGAAATCACTCACGAAGCAGTACGAACCGGGCCTCCACCGTAGTAGGCGACGATGACCCGGCACAGAAAGAGCGTGGGGAAAAGAGGAAGCGCGGGACCAGAGCCACCACGCAACTGAAGGCTCCTACAGCACCAGGGGAAAAGAGGGGTGCGGGGAGACCCAGAGTAGCCTGCGAAAAACCCGAGGGATCCACCTTATACCTGTAG

Protein sequence

MMEGQKQSTMAKRRRRREIDQLGDCVELGRNHSRSSTNRASTVVGDDDPAQKERGEKRKRGTRATTQLKAPTAPGEKRGAGRPRVACEKPEGSTLYL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo14433Spo14433gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo14433.1Spo14433.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14433.1.utr5p.1Spo14433.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14433.1.CDS.3Spo14433.1.CDS.3CDS
Spo14433.1.CDS.2Spo14433.1.CDS.2CDS
Spo14433.1.CDS.1Spo14433.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14433.1.exon.3Spo14433.1.exon.3exon
Spo14433.1.exon.2Spo14433.1.exon.2exon
Spo14433.1.exon.1Spo14433.1.exon.1exon


Homology
[Close]
BLAST of Spo14433.1 vs. NCBI nr
Match: gi|902222998|gb|KNA19349.1| (hypothetical protein SOVF_062420 isoform B [Spinacia oleracea])

HSP 1 Score: 171.8 bits (434), Expect = 5.900e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1 

		  

Query: 10 MAKRRRRREIDQLGDCVELGRNHSRSSTNRASTVVGDDDPAQKERGEKRKRGTRATTQLK 69
          MAKRRRRREIDQLGDCVELGRNHSRSSTNRASTVVGDDDPAQKERGEKRKRGTRATTQLK
Sbjct: 1  MAKRRRRREIDQLGDCVELGRNHSRSSTNRASTVVGDDDPAQKERGEKRKRGTRATTQLK 60

Query: 70 APTAPGEKRGAGRPRVACEKPEGSTLYL 98
          APTAPGEKRGAGRPR+ACEKPEGSTLYL
Sbjct: 61 APTAPGEKRGAGRPRIACEKPEGSTLYL 88
[Close]
BLAST of Spo14433.1 vs. NCBI nr
Match: gi|902222997|gb|KNA19348.1| (hypothetical protein SOVF_062420 isoform A [Spinacia oleracea])

HSP 1 Score: 167.2 bits (422), Expect = 1.500e-38
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 1 

		  

Query: 10 MAKRRRRREIDQLGDCVELGRNHSRSSTNRASTVV-GDDDPAQKERGEKRKRGTRATTQL 69
          MAKRRRRREIDQLGDCVELGRNHSRSSTNRASTVV GDDDPAQKERGEKRKRGTRATTQL
Sbjct: 1  MAKRRRRREIDQLGDCVELGRNHSRSSTNRASTVVAGDDDPAQKERGEKRKRGTRATTQL 60

Query: 70 KAPTAPGEKRGAGRPRVACEKPEGSTLYL 98
          KAPTAPGEKRGAGRPR+ACEKPEGSTLYL
Sbjct: 61 KAPTAPGEKRGAGRPRIACEKPEGSTLYL 89
[Close]
BLAST of Spo14433.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKA1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_062420 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.100e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1 

		  

Query: 10 MAKRRRRREIDQLGDCVELGRNHSRSSTNRASTVVGDDDPAQKERGEKRKRGTRATTQLK 69
          MAKRRRRREIDQLGDCVELGRNHSRSSTNRASTVVGDDDPAQKERGEKRKRGTRATTQLK
Sbjct: 1  MAKRRRRREIDQLGDCVELGRNHSRSSTNRASTVVGDDDPAQKERGEKRKRGTRATTQLK 60

Query: 70 APTAPGEKRGAGRPRVACEKPEGSTLYL 98
          APTAPGEKRGAGRPR+ACEKPEGSTLYL
Sbjct: 61 APTAPGEKRGAGRPRIACEKPEGSTLYL 88
[Close]
BLAST of Spo14433.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIM2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_062420 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.000e-38
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 1 

		  

Query: 10 MAKRRRRREIDQLGDCVELGRNHSRSSTNRASTVV-GDDDPAQKERGEKRKRGTRATTQL 69
          MAKRRRRREIDQLGDCVELGRNHSRSSTNRASTVV GDDDPAQKERGEKRKRGTRATTQL
Sbjct: 1  MAKRRRRREIDQLGDCVELGRNHSRSSTNRASTVVAGDDDPAQKERGEKRKRGTRATTQL 60

Query: 70 KAPTAPGEKRGAGRPRVACEKPEGSTLYL 98
          KAPTAPGEKRGAGRPR+ACEKPEGSTLYL
Sbjct: 61 KAPTAPGEKRGAGRPRIACEKPEGSTLYL 89
The following BLAST results are available for this feature:
BLAST of Spo14433.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902222998|gb|KNA19349.1|5.9e-4098.8hypothetical protein SOVF_0624... [more]
gi|902222997|gb|KNA19348.1|1.5e-3897.7hypothetical protein SOVF_0624... [more]
back to top
BLAST of Spo14433.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RKA1_SPIOL4.1e-4098.8Uncharacterized protein OS=Spi... [more]
A0A0K9RIM2_SPIOL1.0e-3897.7Uncharacterized protein OS=Spi... [more]
back to top
BLAST of Spo14433.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo14433.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top