Spo14511.1 (mRNA)

Overview
NameSpo14511.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_149 : 1167736 .. 1173750 (+)
Sequence length947
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGACGGTATCTCCAAGCCGTTGCATTAGAGGTTCAAATGCAACGTGTATCAGACATGTAACGGCGAGCCAATTAATATTTTCCCGCCTACTGTATACTTTATTTGCTCCCATTAGTTTTTCAAAATTTTCAAAACCGCGCACTTAAAATTTACCTTAAAGAAAATATTAAAAAAAATAGAAATAAAAAAATACACGCAAAAACACTTTATGTGGAACATGTCCAATTATCCAGGAGAGACTGAGAGAAAATACGTAGTTAGGGTTCATCAAACTTTTGGGGAAAGTCTAACGATTTGGTCTCCAATTCGCAATTAGGCACGAGCTTATTTCGAATTTCTTTCAACTGACTGCGAAATTCTCTGCGTAGTTCGAACGCAAAGTTCTCTGCGAAATTCAAACACGAAATTAGTCTATTCTTCGAGTGGAAGGGTTGAATTGGGGCTTTCCATTAATAATTCGAACAAGTTAGAGGAGAAATTCTACTTCAACCATCTGCTACTATTCACGATATGTAATCGATTCACAATTCAGGTTTATGTATTAATAGTGTGAATTTTGGATAGTTTTGTGAGGGTTTGTTCCATTGCTTCTCCGTTTTTCCCTTGTATTGCATTCTCCGTTTTCCCTTTTCTGGTAAGCATAATTCAGGGTTGTTCTGTTTTCTCTCATCTGCTACTGTTTGATATTTGTTCTGCCCCCCTTTTCTGGTAAGAATAATTACAGGTTTTTTTAATATATTCATAGTTGATTATTGGAAGATATTCTGTAAATTTGTAATATTTGATTTAGTTAACCTTTCTATTACTAATGGATTTATATGATTTAGATTGCAGCCATTGTGAGACCCAACCGCCTTCTCAGAGGAACGGGGGTAGAAAGGTCTTGCCTTCTGCTGCTGCACAACATACCCTTGATAGGGGCTTCTCTTCTAATCTCATTCTTGCACCCCAAGCATGCCAGTGAGGTGATTATACCCGCTTCGCCATTTCCACTCATATTCTAAAGTGAAAGACTGTGTTGTTATCTTTGTGTTGTATGCTTATGATGATTGAGAACATGAATGCAGTCACCAGGGAGCTATAATTGTGTCCTCTGGATGAAGTTTGAGCCTGAAAAATCTAAGAAATGTGATGTCCCATGTACTGCTAACTGCCTTATTCTTCATAACATACAACCAAATGTTGCGCATTAAATGCATTTGTCAGGGCACGAGTATTTCCATGCATCATTTATCTTGTTCTTTGCTCTTATTATGTCATTATTGGACTGTAAATTGGTATATGTAGAGTTTTTAGAAGCTTTAATCTCACCAAGTATTAGTTATTGAATTTACAGTTTCAAAAAAAAAACAGTAGCTTCTCTTATTGCTCAGCGGGAACTGGTAAGGTACTAGTTTGCATGTATTTAGAACTCCAAAGACCTTCCATGCATCATTTATCTTGTTCTTTGCTCTTATTATGTCATTATTGGACTGCAAATTACTGGAACTCAAGTCCCTCCTAGAGAATTGTCTGATGGTATTGAAATTACTGGAACTTTCTATCATATTTTGACTTATTTTGTATTTGTTAATTCCTTTCTTCAGAAGGTTAAGGCGTTGGGAACATCAGAGGAGTCTAACAGAGGAAAGATTGAAACTACTAGCAACACGGATATTGAAAATTTGACCTGTCGTAAAAAAAAGGTAACAAATTGAAACTACTCTTATTTTGCTGAGTCTTAGATCTGCAGTCTATTTTCTCCTTCTTAGTAAGTGGTTTTGAAAAAAAAAGTGCAAAGATGCTCAATTTCAAGCAATTTTCCAGAAAATAAGTATTAACTGATTATAGCTCAGAAGAAAATGTTTCAATTCTTCAGAAGGTTAAGGCGTTGGGAACATCAGAGGAGTCTAACAGAGGAAAGATTGAACTACCTGATCATAATCAATATAACAGTGCTTTCATCCAATCTGTATGACATTGTCTCAAAAAGTATAGACACAGCAGATATCTTCTAGGTGTCTGTCTGCAACATAATGATCGAAGTTATTAGCCACTCACAAAAAAATTAGGGGTTAGTTAAATAGCCTAAACCGAGCACGTTTCTCTCTAGCAAGTTACTGCTTGATGAGAGTATCCAAAAGTTGATACCGTGCATATGATTTGTCCCAGATTTGTTTGCAATGAATGTTTTGATCTATCTATCTAACTGCATCAGCAAAGAGGAGTGGTATTTGTGATCCTTGTATCTTTCTAAAGTCGTCAATACTGCTGATCTCTATGTCTGGTTTCCTTTTTTTTTCCTTGAGACTTGAGCAATATCTATTTATGTGCCTGGTGTCTACAAGAGTGTGTACCAAGCTGTGAAAGTCAATTGTTGTATTTCTTAGAGTTACTGAGTTAGTGTTGTCATGAGTTAGAATAGTTTTTAGGGACTCGGGTACTATGTTGATATATTGGTATTTTTGGTTGTGACCACACTAATGTCCAGGGGCATGAATGTTTTCTACGCTTGTCATCTGAATTCACTACATCGCTGTTTGATGTTACTGATAGGAATTTCAACTACGAGAAGGGAGTTGGTTGACTGATTAAAAATGCTGAAAGCTGATTGCTGATAAAAAAAATCTGTTGACTGATAAAAAAAATATGAAAGCTGTTGTTGTTAGGTGTTTCTATCATCATTATCATTACTATTAATGATGAAACATAGCCATCATAATCCAACTTTATAGCTTTATACTCCCAGACTTTACTTTAGCAAAAGAGATTAATTGTTCAACCTATCATTCAAAATAAAATATAAAGTAATTACCATAAACATTTGAATTCCAACTATATCTGATCAAACCTCTGTAGTGAATTGTTTAGAAGCCTCCACAGTTCAGACAACAATTGAACAGCCACTTCCATACCATCTTTTAAGCAACCATAGTAAACTACTCCGAATCCGCCTTTTCCCAGCTCTCCTTGGAAGCTTCCATGCCATGCTTGTTATACAAAAAATGATGAAAACTGCTACAATTAGAACCAGTACAGCTGAAAATGCAGCTATGTGAGCAACGAGTATTTTGCTTTTCTTGTTCTTCGAAGTACAGGAGTTGCTCGAACATAGATCTGAATTATTTTGCATGCTTTACTCGGAAACATAAGAAAGTCAGACAAAATGTTTTAGAGAAGGTGAATTGTCAAAGACAGAAAACTATAGGATCTTGAATATTTGTTGATACAAGTACCTTAAAGAGAGTGGTCCTGCAGCAGATTTTTCTAACAGAAGTTTAGGAACTGAACCAGTGAAGTTGTTTACTGAAAGGTTTCTGCAAACATTTAACATTGTTGTGTTAATACTTGACAGACCTTTAACATTTACAGTACCACGGTCTGGATTTAGTTGTCACTTTGCTAGCTAATTACGCCATCACATGCAGTAACAATTAATTCCAGATGAAAAGGGAACAAAACAAAGGAATGAATGAAAACATTACAAGATTTGTACTGCTGTAAGATTTGCAAATGAAGCCGCAATATGTCCAGTAAGCCCCTTCGAACTAAGATTTCTGATCACAAAAAAGTGAAACAGAACAGATTAACTTGAGAATTGTTTAAGAGATAATAAAAATAGGATGTAAAAGCTTATATTAATATTATTCTGGTTGAGTTGGAACTGTCATAGTTGCAGTCCACGCCAGACCCTCTCGCTAGAGGATATGTTGCTACAAGCAAAGTCGAACTCTTTGACTTTCTCTATCTTCACTGTCTATGATCCCTCTCGCCGAGTTTCGTTCTCCTGGGTATCTACAAATGAGGTTATGTCTGTGTTCATACATACAGTACTTTCACATTGAGTTTTTTTGCAAATTTTATGGTGAAGCAAAGTTTAATCTGTAAATGTTATCTGGGGCATGGCCTGATTCCTTAAGAATTGTTGAAACATAAGCAATGCAAGTCGAGGGAAAATCAACTGAACCTCATGCCCTGCATCCCTGATACAGATACAAATTCCTCAAAAGTTTTTGAAACATAAGAATTCTTCTTCTGGTACTTATCCTTGCTACTCGTATCTTCAGATACAGATGCAACAGCAATCAGGGCAGTCTTAGCAGTGGCTATTGCTTTCGCAGCAATAGCAGCTTTTTCCTCAGCAGCAGCTCGTGTAGCTTCAGCTGCCTTAGCTAATATGTACAACATACAGGTGTTGGTTGTCTCAGCTTGTTAGCTGATTTGTTTTTTGTTCTTGAGATTTCAGTATTTTTGCTTTGTATTAACTGCTTATTCCTTTTGGTAATAATAATTTATTTGCCAAAATAAACTTGAGATGGATGTTTACTGATGTATACCTGATCTTTATATTACAGGTTATAGCTCAGTCCTCGACTATGGGTGATTTTGTGAAGAATAATAATCAGCAACTTGCACCCCATGTTGTATCTATGATTGTATCTCAACTTCAAGAAGCTAGACCATCAATTCCAAAGGATGCATCTAGTACGCTGCATGTCAGTGAGCGAAATGGACAGTCTGGTGGGACAAGCAGGACAATTAACCAGGTAAAATATTTGTTTTGGCATTATAATATGTTGCGTTGTCTTATTATTTTATTGAAATTCTGTTGTGGTGTTTGGTTGTATAGTTGGACAGGTTCGTTTAGTTATCGGTAGTTTGGCAGAACCTTTAGTAGTTGTTGGATTTGGGTGTTACTAAATGAAGAATTGAACATAAATGTCGATATATCTTCTTTCACATTCTTTAAGGGATAGCTGCGTAATAAGGACCAAACCACATTATGTTTGCAAATGTTTTCATTGTCATTTGTAATGTGAGAACCTAATCTCTTCATTTTCCTAGTCAGAATTTGTTTAATGGGTAGACCTTTGTTAAAGTGGTGGTCTAAGCTGTGAATGAGTATCTCACTTGAATCCAAAGAATGAGATCTAGGCCCACATCACCCACTCAGTAACTAATAAAGAAAACTGGCATACACCCTTTGGCACCAACTGCAAGAAAAGCCTTAGAAAGAGATAGTTCAGTGATGTTTATGATAGTTCCCTTATTTCTGAACTAATAAACAAAACTAGCATGAATTGGCAGTGAATGAAGGAGCCTTTTTCTGAAGAAACAGATGCAATTCCCTTATATTAGAGGGTGTCATCTGAATTTTCTGTGGACCTATTTCCTTTCACTTTCTTAAATGAGCCATATCACAATTGATTACGTTTAGATTTTTTTTGAAGTTGGCAATTCTTGTTGATAACATTTCTTCCTTCTTGTGCCCTTCTTATTAATAGATCATACTCATGTGAACTGGCGTTTTATTGATATGCATGTTCCCTTAGCCTTTTTCCATCTTTTTGAAGAACGAGGGGAAATTGATGAATATCATTTATAGGTATTGAGTCCTGTTCCGAGACTGCTACATCCTACATGATTAAGAACCTTGAATACTAAGCAAGTACCATATGTTAGGGTCTGGAATCAGTCATCAGATATTGAGAGGCACAGATTCATCGTCTCATAGAATTGTTTGCTGGGCATATATTGTCTACATTTCTGCCCTACTTATTGGGTTTTGCACATGCTTGTCTAATACCCTCAGGATCTGAACAGCAGCCTCAAGGTGTGAATCATCACATAAATGCAACGCCCCTCGCTGTATTATTGTTCATGCTCAGCTTGGTTCAAACTTTAAATACAATTTCTACTTCCTCCGTCCCAAAACAATAAGTTGTATTTGATTGGAGTCATTTTAAGGATTTGAGATTTATTTAATTAAAAATAGTCGTATCTAGGTATTGCTTACTTTTTTGTGAAATTTCATGCTTTATTTGAATAAACATGAAGTTTATTAAATTATTTAAATTATCGTGTTTTAGCTAGTGCACCATCTCTAACTTGTGCCCATTCGTGATTTAAACTTGCATGAGCATGGTGAGCTAAATGGAGAAGAAATGTATATCTAGCAATGACACGGTGGAGGCTCTTGTTTGTTTTTGAGTCATTTTGTGATTTCTAGTAATGTTGAATTTGTTTACGTGG

mRNA sequence

ATGCGACGTTTTGTGAGGGTTTGTTCCATTGCTTCTCCGTTTTTCCCTTGTATTGCATTCTCCGTTTTCCCTTTTCTGATTGCAGCCATTGTGAGACCCAACCGCCTTCTCAGAGGAACGGGGGTAGAAAGGTCTTGCCTTCTGCTGCTGCACAACATACCCTTGATAGGGGCTTCTCTTCTAATCTCATTCTTGCACCCCAAGCATGCCAGTGAGAAGGTTAAGGCGTTGGGAACATCAGAGGAGTCTAACAGAGGAAAGATTGAAACTACTAGCAACACGGATATTGAAAATTTGACCTGTCGTAAAAAAAAGGTTATAGCTCAGTCCTCGACTATGGGTGATTTTGTGAAGAATAATAATCAGCAACTTGCACCCCATGTTGTATCTATGATTGTATCTCAACTTCAAGAAGCTAGACCATCAATTCCAAAGGATGCATCTAGTACGCTGCATGTCAGTGAGCGAAATGGACAGTCTGGTGGGACAAGCAGGACAATTAACCAGGATCTGAACAGCAGCCTCAAGGTGTGAATCATCACATAAATGCAACGCCCCTCGCTGTATTATTGTTCATGCTCAGCTTGGTTCAAACTTTAAATACAATTTCTACTTCCTCCGTCCCAAAACAATAAGTTGTATTTGATTGGAGTCATTTTAAGGATTTGAGATTTATTTAATTAAAAATAGTCGTATCTAGGTATTGCTTACTTTTTTGTGAAATTTCATGCTTTATTTGAATAAACATGAAGTTTATTAAATTATTTAAATTATCGTGTTTTAGCTAGTGCACCATCTCTAACTTGTGCCCATTCGTGATTTAAACTTGCATGAGCATGGTGAGCTAAATGGAGAAGAAATGTATATCTAGCAATGACACGGTGGAGGCTCTTGTTTGTTTTTGAGTCATTTTGTGATTTCTAGTAATGTTGAATTTGTTTACGTGG

Coding sequence (CDS)

ATGCGACGTTTTGTGAGGGTTTGTTCCATTGCTTCTCCGTTTTTCCCTTGTATTGCATTCTCCGTTTTCCCTTTTCTGATTGCAGCCATTGTGAGACCCAACCGCCTTCTCAGAGGAACGGGGGTAGAAAGGTCTTGCCTTCTGCTGCTGCACAACATACCCTTGATAGGGGCTTCTCTTCTAATCTCATTCTTGCACCCCAAGCATGCCAGTGAGAAGGTTAAGGCGTTGGGAACATCAGAGGAGTCTAACAGAGGAAAGATTGAAACTACTAGCAACACGGATATTGAAAATTTGACCTGTCGTAAAAAAAAGGTTATAGCTCAGTCCTCGACTATGGGTGATTTTGTGAAGAATAATAATCAGCAACTTGCACCCCATGTTGTATCTATGATTGTATCTCAACTTCAAGAAGCTAGACCATCAATTCCAAAGGATGCATCTAGTACGCTGCATGTCAGTGAGCGAAATGGACAGTCTGGTGGGACAAGCAGGACAATTAACCAGGATCTGAACAGCAGCCTCAAGGTGTGA

Protein sequence

MRRFVRVCSIASPFFPCIAFSVFPFLIAAIVRPNRLLRGTGVERSCLLLLHNIPLIGASLLISFLHPKHASEKVKALGTSEESNRGKIETTSNTDIENLTCRKKKVIAQSSTMGDFVKNNNQQLAPHVVSMIVSQLQEARPSIPKDASSTLHVSERNGQSGGTSRTINQDLNSSLKV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo14511Spo14511gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo14511.1Spo14511.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14511.1.exon.1Spo14511.1.exon.1exon
Spo14511.1.exon.2Spo14511.1.exon.2exon
Spo14511.1.exon.3Spo14511.1.exon.3exon
Spo14511.1.exon.4Spo14511.1.exon.4exon
Spo14511.1.exon.5Spo14511.1.exon.5exon
Spo14511.1.exon.6Spo14511.1.exon.6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14511.1.CDS.1Spo14511.1.CDS.1CDS
Spo14511.1.CDS.2Spo14511.1.CDS.2CDS
Spo14511.1.CDS.3Spo14511.1.CDS.3CDS
Spo14511.1.CDS.4Spo14511.1.CDS.4CDS
Spo14511.1.CDS.5Spo14511.1.CDS.5CDS
Spo14511.1.CDS.6Spo14511.1.CDS.6CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14511.1.utr3p.1Spo14511.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo14511.1 vs. NCBI nr
Match: gi|902231959|gb|KNA22475.1| (hypothetical protein SOVF_033740 [Spinacia oleracea])

HSP 1 Score: 123.2 bits (308), Expect = 4.400e-25
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1 

		  

Query: 105 KVIAQSSTMGDFVKNNNQQLAPHVVSMIVSQLQEARPSIPKDASSTLHVSERNGQSGGTS 164
           +VIAQSSTMGDFVKNNNQQLAPHVVSMIVSQLQEARPSIPKDASSTLHVSERNGQSGGTS
Sbjct: 83  QVIAQSSTMGDFVKNNNQQLAPHVVSMIVSQLQEARPSIPKDASSTLHVSERNGQSGGTS 142

Query: 165 RTINQ 170
           RTINQ
Sbjct: 143 RTINQ 147
[Close]
BLAST of Spo14511.1 vs. NCBI nr
Match: gi|902180273|gb|KNA09516.1| (hypothetical protein SOVF_152930, partial [Spinacia oleracea])

HSP 1 Score: 67.8 bits (164), Expect = 2.200e-8
Identity = 40/59 (67.80%), Postives = 42/59 (71.19%), Query Frame = 1 

		  

Query: 123 QLAPHVVSMIVSQLQEARPSI------------PKDASSTLHVSERNGQSGGTSRTINQ 170
           QLAPHVVSMIVSQLQEA P I            PKDA+S   VSE+NGQSGGTSRTINQ
Sbjct: 8   QLAPHVVSMIVSQLQEANPEINIVIPDFVTSSTPKDAASAPRVSEQNGQSGGTSRTINQ 66
[Close]
BLAST of Spo14511.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSF4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_033740 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.100e-25
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1 

		  

Query: 105 KVIAQSSTMGDFVKNNNQQLAPHVVSMIVSQLQEARPSIPKDASSTLHVSERNGQSGGTS 164
           +VIAQSSTMGDFVKNNNQQLAPHVVSMIVSQLQEARPSIPKDASSTLHVSERNGQSGGTS
Sbjct: 83  QVIAQSSTMGDFVKNNNQQLAPHVVSMIVSQLQEARPSIPKDASSTLHVSERNGQSGGTS 142

Query: 165 RTINQ 170
           RTINQ
Sbjct: 143 RTINQ 147
[Close]
BLAST of Spo14511.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QSK1_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_152930 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.500e-8
Identity = 40/59 (67.80%), Postives = 42/59 (71.19%), Query Frame = 1 

		  

Query: 123 QLAPHVVSMIVSQLQEARPSI------------PKDASSTLHVSERNGQSGGTSRTINQ 170
           QLAPHVVSMIVSQLQEA P I            PKDA+S   VSE+NGQSGGTSRTINQ
Sbjct: 8   QLAPHVVSMIVSQLQEANPEINIVIPDFVTSSTPKDAASAPRVSEQNGQSGGTSRTINQ 66
The following BLAST results are available for this feature:
BLAST of Spo14511.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902231959|gb|KNA22475.1|4.4e-2598.4hypothetical protein SOVF_0337... [more]
gi|902180273|gb|KNA09516.1|2.2e-867.8hypothetical protein SOVF_1529... [more]
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BLAST of Spo14511.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RSF4_SPIOL3.1e-2598.4Uncharacterized protein OS=Spi... [more]
A0A0K9QSK1_SPIOL1.5e-867.8Uncharacterized protein (Fragm... [more]
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BLAST of Spo14511.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo14511.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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