Spo14548.1 (mRNA)

Overview
NameSpo14548.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_13822 : 582 .. 968 (+)
Sequence length387
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCGCGTCGCGCAGCACGTAGCTCCCGAGGCCTCGAAGGACCCCAAGTTGTCTCCCTTAACCGGGACGGCAAAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAGCTTTAGAATCGGGCGGCTTCGCCATCCGAATTGTAGTCTGGAGAAGCGTCCTCTGCGGCGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGTGGGCGGTAA

mRNA sequence

ATGCATCGCGTCGCGCAGCACGTAGCTCCCGAGGCCTCGAAGGACCCCAAGTTGTCTCCCTTAACCGGGACGGCAAAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAGCTTTAGAATCGGGCGGCTTCGCCATCCGAATTGTAGTCTGGAGAAGCGTCCTCTGCGGCGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGTGGGCGGTAA

Coding sequence (CDS)

ATGCATCGCGTCGCGCAGCACGTAGCTCCCGAGGCCTCGAAGGACCCCAAGTTGTCTCCCTTAACCGGGACGGCAAAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAGCTTTAGAATCGGGCGGCTTCGCCATCCGAATTGTAGTCTGGAGAAGCGTCCTCTGCGGCGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGTGGGCGGTAA

Protein sequence

MHRVAQHVAPEASKDPKLSPLTGTAKPLRPQVRRGYPLSLSISISGGEETYKDSPSNGERTGNSPALESGGFAIRIVVWRSVLCGGPGPSPLERGAREGESPVVPGPCRTTRRCRRVGLFGNAALSGR
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo14548Spo14548gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo14548.1Spo14548.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14548.1.exon.1Spo14548.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14548.1.CDS.1Spo14548.1.CDS.1CDS


Homology
[Close]
BLAST of Spo14548.1 vs. NCBI nr
Match: gi|870767542|gb|KMS65341.1| (hypothetical protein BVRB_036970, partial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 140.2 bits (352), Expect = 2.500e-30
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 1 

		  

Query: 32  VRRGYPLSLSISISGGEETYKDSPSNGERTGNSPALESGGFAIRIVVWRSVLCGGPGPSP 91
           VRRG+PLSLSISISGG+ETYKDSPSNGERTGNSPALESGG A+RIVVWRSVLCGGPGPSP
Sbjct: 1   VRRGHPLSLSISISGGKETYKDSPSNGERTGNSPALESGGLAVRIVVWRSVLCGGPGPSP 60

Query: 92  LERGAREGESPVVP 106
           LE  AREGESPV P
Sbjct: 61  LEWDAREGESPVAP 74
[Close]
BLAST of Spo14548.1 vs. NCBI nr
Match: gi|902148572|gb|KNA05259.1| (hypothetical protein SOVF_192120, partial [Spinacia oleracea])

HSP 1 Score: 113.6 bits (283), Expect = 2.500e-22
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1 

		  

Query: 69  SGGFAIRIVVWRSVLCGGPGPSPLERGAREGESPVVPGPCRTTRRCRRVGLFGNAAL 126
           SGGF +RIVVWRSVLCGGP PS LERGAREGESP+VPGPC TTRRCRRVGLFGNAAL
Sbjct: 1   SGGFTVRIVVWRSVLCGGPSPSALERGAREGESPIVPGPCHTTRRCRRVGLFGNAAL 57
[Close]
BLAST of Spo14548.1 vs. NCBI nr
Match: gi|902159193|gb|KNA06308.1| (hypothetical protein SOVF_182180, partial [Spinacia oleracea])

HSP 1 Score: 95.5 bits (236), Expect = 7.100e-17
Identity = 52/80 (65.00%), Postives = 55/80 (68.75%), Query Frame = 1 

		  

Query: 1  MHRVAQHVAPEASKDPKLSPLTGTAKPLRPQVRRGYPLSLSISISGGEETYKDSPSNGER 60
          MHRVAQHVA EASKDP +  L    K +            SISISGGEETYK SPSNGER
Sbjct: 1  MHRVAQHVASEASKDPNVISLNWDGKTVX-----------SISISGGEETYKHSPSNGER 60

Query: 61 TGNSPALESGGFAIRIVVWR 81
           GN PALESG FA+RIVVWR
Sbjct: 61 AGNIPALESGDFAVRIVVWR 69
[Close]
BLAST of Spo14548.1 vs. NCBI nr
Match: gi|566211063|ref|XP_006372605.1| (hypothetical protein POPTR_0017s03170g [Populus trichocarpa])

HSP 1 Score: 72.8 bits (177), Expect = 4.900e-10
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1 

		  

Query: 28  LRPQVRRGYPLSLSISISGGEETYKDSPSNGERTGNSPA 67
           LRPQVRR YPLSLSISISGG+ETYKDSPSNGERTG  PA
Sbjct: 112 LRPQVRRDYPLSLSISISGGKETYKDSPSNGERTGKCPA 150
[Close]
BLAST of Spo14548.1 vs. NCBI nr
Match: gi|566185230|ref|XP_006380094.1| (hypothetical protein POPTR_0008s21830g [Populus trichocarpa])

HSP 1 Score: 72.8 bits (177), Expect = 4.900e-10
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1 

		  

Query: 28  LRPQVRRGYPLSLSISISGGEETYKDSPSNGERTGNSPA 67
           LRPQVRR YPLSLSISISGG+ETYKDSPSNGERTG  PA
Sbjct: 112 LRPQVRRDYPLSLSISISGGKETYKDSPSNGERTGKCPA 150
[Close]
BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Match: M1D9E9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400034963 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.200e-42
Identity = 89/100 (89.00%), Postives = 91/100 (91.00%), Query Frame = 1 

		  

Query: 29  RPQVRRGYPLSLSISISGGEETYKDSPSNGERTGNSPALESGGFAIRIVVWRSVLCGGPG 88
           RPQVRR YPLSLSISISGG+ETYKDS SNGERTGNSPALESGG  +RIVVWRSVL GGPG
Sbjct: 110 RPQVRRDYPLSLSISISGGKETYKDSLSNGERTGNSPALESGGSVVRIVVWRSVLSGGPG 169

Query: 89  PSPLERGAREGESPVVPGPCRTTRRCRRVGLFGNAALSGR 129
           PSPLE GAREGESPVVPGPCRTTRRC RVGLFGNAA  GR
Sbjct: 170 PSPLEGGAREGESPVVPGPCRTTRRCLRVGLFGNAAQIGR 209
[Close]
BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Match: M1DS60_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400043107 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 7.600e-34
Identity = 73/94 (77.66%), Postives = 79/94 (84.04%), Query Frame = 1 

		  

Query: 32  VRRGYPLSLSISISGGEETYKDSPSNGERTGNSPALESGGFAIRIVVWRSVLCGGPGPSP 91
           VRR YPLSLSISISGG+ETYKDS SNGE  GN+P LESGG  +RIV+WRS+L GG GP P
Sbjct: 30  VRRDYPLSLSISISGGKETYKDSLSNGELIGNNPTLESGGSIVRIVLWRSILSGGSGPCP 89

Query: 92  LERGAREGESPVVPGPCRTTRRCRRVGLFGNAAL 126
           LE  AREG+SPVVPGPC TTRRC RVGLFGNA L
Sbjct: 90  LEGDAREGDSPVVPGPCHTTRRCLRVGLFGNATL 123
[Close]
BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Match: A0A0J7YP30_BETVU (Uncharacterized protein (Fragment) OS=Beta vulgaris subsp. vulgaris GN=BVRB_036970 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.800e-30
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 1 

		  

Query: 32  VRRGYPLSLSISISGGEETYKDSPSNGERTGNSPALESGGFAIRIVVWRSVLCGGPGPSP 91
           VRRG+PLSLSISISGG+ETYKDSPSNGERTGNSPALESGG A+RIVVWRSVLCGGPGPSP
Sbjct: 1   VRRGHPLSLSISISGGKETYKDSPSNGERTGNSPALESGGLAVRIVVWRSVLCGGPGPSP 60

Query: 92  LERGAREGESPVVP 106
           LE  AREGESPV P
Sbjct: 61  LEWDAREGESPVAP 74
[Close]
BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Match: M0ZZR9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004552 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.400e-24
Identity = 59/83 (71.08%), Postives = 65/83 (78.31%), Query Frame = 1 

		  

Query: 46  GGEETYKDSPSNGERTGNSPALESGGFAIRIVVWRSVLCGGPGPSPLERGAREGESPVVP 105
           GG+ETYKDS SNGE  GN+  LESGG  +RIV+WRSVL GG GP PLE  AREG+S VVP
Sbjct: 288 GGKETYKDSLSNGELIGNNTTLESGGSIVRIVLWRSVLSGGSGPCPLEGDAREGDSLVVP 347

Query: 106 GPCRTTRRCRRVGLFGNAALSGR 129
           GPC TTRRC RVGLFGNA  + R
Sbjct: 348 GPCHTTRRCLRVGLFGNATQNRR 370
[Close]
BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDA8_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_192120 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.800e-22
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1 

		  

Query: 69  SGGFAIRIVVWRSVLCGGPGPSPLERGAREGESPVVPGPCRTTRRCRRVGLFGNAAL 126
           SGGF +RIVVWRSVLCGGP PS LERGAREGESP+VPGPC TTRRCRRVGLFGNAAL
Sbjct: 1   SGGFTVRIVVWRSVLCGGPSPSALERGAREGESPIVPGPCHTTRRCRRVGLFGNAAL 57
The following BLAST results are available for this feature:
BLAST of Spo14548.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|870767542|gb|KMS65341.1|2.5e-3090.5hypothetical protein BVRB_0369... [more]
gi|902148572|gb|KNA05259.1|2.5e-2289.4hypothetical protein SOVF_1921... [more]
gi|902159193|gb|KNA06308.1|7.1e-1765.0hypothetical protein SOVF_1821... [more]
gi|566211063|ref|XP_006372605.1|4.9e-1089.7hypothetical protein POPTR_001... [more]
gi|566185230|ref|XP_006380094.1|4.9e-1089.7hypothetical protein POPTR_000... [more]
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BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
M1D9E9_SOLTU1.2e-4289.0Uncharacterized protein OS=Sol... [more]
M1DS60_SOLTU7.6e-3477.6Uncharacterized protein OS=Sol... [more]
A0A0J7YP30_BETVU1.8e-3090.5Uncharacterized protein (Fragm... [more]
M0ZZR9_SOLTU1.4e-2471.0Uncharacterized protein OS=Sol... [more]
A0A0K9QDA8_SPIOL1.8e-2289.4Uncharacterized protein (Fragm... [more]
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BLAST of Spo14548.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo14548.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33220FAMILY NOT NAMEDcoord: 27..66
score: 1.8
NoneNo IPR availablePANTHERPTHR33220:SF1SUBFAMILY NOT NAMEDcoord: 27..66
score: 1.8