Spo15007.1 (mRNA) | SpinachBase

Overview


Name	Spo15007.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_01133 : 142552 .. 142998 (-)
Sequence length	447

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCATCTTAAAACCATTATCACCATCTTACTCATGCTTATTACAACATCTCTAGCTCGTTATAACTCCTTTGGGGAAGGCGGTGGTGGAGGGCGGAGAGTGGAGATGACGCCGGACGTGTATTCATCTCCATCATCACAAGTTAATAACCAAGGCATGGAGGGGACAACAACGGGCGCCACCGGCTCAGCCCATGGCCCGAATGGGGAATATGGATGGGGTTGGGGTGCCGGTCCAAGAAGCGGTTGGGGATATGGTTACGGTTCAAGCCATTCCCCTACCGGGTTTGGACGAGGGTACGGGTTCGGATATGGGATTGGGTCTGGGTCTGGGTCCGGGTATGGATATGGGTCAGGCGGCGGTACCAGTGCTGGTGGATACGGATATGGAGCTGGGGGAGCTCATGGAGGAGGTGGGTATGGAAGTCCCTCTAACCATGGTTAA

mRNA sequence

ATGTATCATCTTAAAACCATTATCACCATCTTACTCATGCTTATTACAACATCTCTAGCTCGTTATAACTCCTTTGGGGAAGGCGGTGGTGGAGGGCGGAGAGTGGAGATGACGCCGGACGTGTATTCATCTCCATCATCACAAGTTAATAACCAAGGCATGGAGGGGACAACAACGGGCGCCACCGGCTCAGCCCATGGCCCGAATGGGGAATATGGATGGGGTTGGGGTGCCGGTCCAAGAAGCGGTTGGGGATATGGTTACGGTTCAAGCCATTCCCCTACCGGGTTTGGACGAGGGTACGGGTTCGGATATGGGATTGGGTCTGGGTCTGGGTCCGGGTATGGATATGGGTCAGGCGGCGGTACCAGTGCTGGTGGATACGGATATGGAGCTGGGGGAGCTCATGGAGGAGGTGGGTATGGAAGTCCCTCTAACCATGGTTAA

Coding sequence (CDS)

ATGTATCATCTTAAAACCATTATCACCATCTTACTCATGCTTATTACAACATCTCTAGCTCGTTATAACTCCTTTGGGGAAGGCGGTGGTGGAGGGCGGAGAGTGGAGATGACGCCGGACGTGTATTCATCTCCATCATCACAAGTTAATAACCAAGGCATGGAGGGGACAACAACGGGCGCCACCGGCTCAGCCCATGGCCCGAATGGGGAATATGGATGGGGTTGGGGTGCCGGTCCAAGAAGCGGTTGGGGATATGGTTACGGTTCAAGCCATTCCCCTACCGGGTTTGGACGAGGGTACGGGTTCGGATATGGGATTGGGTCTGGGTCTGGGTCCGGGTATGGATATGGGTCAGGCGGCGGTACCAGTGCTGGTGGATACGGATATGGAGCTGGGGGAGCTCATGGAGGAGGTGGGTATGGAAGTCCCTCTAACCATGGTTAA

Protein sequence

MYHLKTIITILLMLITTSLARYNSFGEGGGGGRRVEMTPDVYSSPSSQVNNQGMEGTTTGATGSAHGPNGEYGWGWGAGPRSGWGYGYGSSHSPTGFGRGYGFGYGIGSGSGSGYGYGSGGGTSAGGYGYGAGGAHGGGGYGSPSNHG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo15007	Spo15007	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo15007.1	Spo15007.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo15007.1.CDS.1	Spo15007.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo15007.1.exon.1	Spo15007.1.exon.1	exon

Homology

[Close]

BLAST of Spo15007.1 vs. NCBI nr
Match: gi|902227861|gb|KNA20859.1| (hypothetical protein SOVF_048340 [Spinacia oleracea])

HSP 1 Score: 271.6 bits (693), Expect = 8.400e-70
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


		  
Query: 1   MYHLKTIITILLMLITTSLARYNSFGEGGGGGRRVEMTPDVYSSPSSQVNNQGMEGTTTG 60
           MYHLKTIITILLMLITTSLARYNSFGEGGGGGRRVEMTPDVYSSPSSQVNNQGMEGTTTG
Sbjct: 1   MYHLKTIITILLMLITTSLARYNSFGEGGGGGRRVEMTPDVYSSPSSQVNNQGMEGTTTG 60

Query: 61  ATGSAHGPNGEYGWGWGAGPRSGWGYGYGSSHSPTGFGRGYGFGYGIGSGSGSGYGYGSG 120
           ATGSAHGPNGEYGWGWGAGPRSGWGYGYGSSHSPTGFGRGYGFGYGIGSGSGSGYGYGSG
Sbjct: 61  ATGSAHGPNGEYGWGWGAGPRSGWGYGYGSSHSPTGFGRGYGFGYGIGSGSGSGYGYGSG 120

Query: 121 GGTSAGGYGYGAGGAHGGGGYGSPSNHG 149
           GGTSAGGYGYGAGGAHGGGGYGSPSNHG
Sbjct: 121 GGTSAGGYGYGAGGAHGGGGYGSPSNHG 148

[Close]

BLAST of Spo15007.1 vs. NCBI nr
Match: gi|731345581|ref|XP_010683992.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 160.2 bits (404), Expect = 2.700e-36
Identity = 107/157 (68.15%), Postives = 117/157 (74.52%), Query Frame = 1


		  
Query: 1   MYHLKTI---ITILLMLITTSLARYNSFGEGGGGGRRVEMTPD----VYSSPSSQVNNQG 60
           M+H K +   + IL ML+T SLARYNSFGEG  G R    +      V+SSP+    NQ 
Sbjct: 1   MHHSKNLLCLVIILYMLVTISLARYNSFGEGHEGDRMKTSSSSQQETVFSSPTI---NQD 60

Query: 61  MEGTTTGATGSAHGPNGEYGWGWGAGPRSGWGYGYGSSHSPTGFGRGYGFGYGIGSGSGS 120
            E T TGA GSAHGPN +YGWGWGAGPRSGWGYGYGSSH+PTGF RGYGFGYG GSGSGS
Sbjct: 61  SEPTPTGAVGSAHGPNWDYGWGWGAGPRSGWGYGYGSSHAPTGFARGYGFGYGSGSGSGS 120

Query: 121 GYGYGSGGGTSAGGYGYGAGGAH---GGGGYGSPSNH 148
           GYGYG+GGG  A GYGYGAGGAH   GGGG GSPSNH
Sbjct: 121 GYGYGTGGG-GASGYGYGAGGAHGGSGGGGGGSPSNH 153

[Close]

BLAST of Spo15007.1 vs. NCBI nr
Match: gi|870854708|gb|KMT06463.1| (hypothetical protein BVRB_7g161320 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 156.4 bits (394), Expect = 3.900e-35
Identity = 102/142 (71.83%), Postives = 109/142 (76.76%), Query Frame = 1


		  
Query: 13  MLITTSLARYNSFGEGGGGGRRVEMTPD----VYSSPSSQVNNQGMEGTTTGATGSAHGP 72
           ML+T SLARYNSFGEG  G R    +      V+SSP+    NQ  E T TGA GSAHGP
Sbjct: 1   MLVTISLARYNSFGEGHEGDRMKTSSSSQQETVFSSPTI---NQDSEPTPTGAVGSAHGP 60

Query: 73  NGEYGWGWGAGPRSGWGYGYGSSHSPTGFGRGYGFGYGIGSGSGSGYGYGSGGGTSAGGY 132
           N +YGWGWGAGPRSGWGYGYGSSH+PTGF RGYGFGYG GSGSGSGYGYG+GGG  A GY
Sbjct: 61  NWDYGWGWGAGPRSGWGYGYGSSHAPTGFARGYGFGYGSGSGSGSGYGYGTGGG-GASGY 120

Query: 133 GYGAGGAH---GGGGYGSPSNH 148
           GYGAGGAH   GGGG GSPSNH
Sbjct: 121 GYGAGGAHGGSGGGGGGSPSNH 138

[Close]

BLAST of Spo15007.1 vs. NCBI nr
Match: gi|356576179|ref|XP_003556211.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Glycine max])

HSP 1 Score: 102.1 bits (253), Expect = 8.800e-19
Identity = 77/148 (52.03%), Postives = 93/148 (62.84%), Query Frame = 1


		  
Query: 2   YHLKTIITILLMLITTSLARYNSFGEGGGGGRRVEMTPDVYSSPSSQVNNQGMEGTTTGA 61
           Y LK +   LL LIT++ A        GGG R++        +P        + GT TGA
Sbjct: 6   YTLKHLALFLLFLITSTSAA------AGGGRRKLRFDMSSGGAP--------LAGTPTGA 65

Query: 62  TGSAHGPNGEYGWGWGAGPRSGWGYGYGSSHSPTGFGRGYGFGYGIGSGSGSGYGYGSGG 121
           TGS HG N +Y WGWG+GP +G+GYG GS  SPTGF RGYG+G+G G+GSGSGYGYGSGG
Sbjct: 66  TGSGHGANWDYSWGWGSGPGTGYGYGSGSGRSPTGFARGYGYGFGSGTGSGSGYGYGSGG 125

Query: 122 GTSAGGYGYGAG-GAHGGGGYGSPSNHG 149
           G  AGGYG G+G G  GGGGY   +  G
Sbjct: 126 GAHAGGYGSGSGSGNSGGGGYDDKNGGG 139

[Close]

BLAST of Spo15007.1 vs. NCBI nr
Match: gi|1009121799|ref|XP_015877656.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Ziziphus jujuba])

HSP 1 Score: 100.5 bits (249), Expect = 2.600e-18
Identity = 80/151 (52.98%), Postives = 91/151 (60.26%), Query Frame = 1


		  
Query: 8   ITILLMLITTSLARYNSFGEGGGGGRRVEMTPDVYSSPSSQVNNQGMEGTTTGATGSAHG 67
           I + L +  T LA     G GG GG +VE   D+ S P++        G+ TGATGS HG
Sbjct: 10  IFLTLFISATCLASKGGVGSGGSGGPKVE-PQDMTSEPNAAT------GSPTGATGSGHG 69

Query: 68  PNGEYGWGWGAGPRSGWGYGYGSSHSPTGFGRGYGFGY----GIGSGSGSGYGYGS-GGG 127
           PN +Y WGWG+ P SGWGYG GS  SP GFGRG+GFG+    G GSGSGSGYGYGS GGG
Sbjct: 70  PNYDYNWGWGSSPGSGWGYGSGSGRSPDGFGRGWGFGFGSGSGSGSGSGSGYGYGSGGGG 129

Query: 128 TSAGGYGYGA-----GGAHGGGGYGSPSNHG 149
              GGYG GA     GG   GGG G    HG
Sbjct: 130 ARGGGYGSGAGSGNSGGGGSGGGSGGQGGHG 153

[Close]

BLAST of Spo15007.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RPN7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_048340 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 5.800e-70
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


		  
Query: 1   MYHLKTIITILLMLITTSLARYNSFGEGGGGGRRVEMTPDVYSSPSSQVNNQGMEGTTTG 60
           MYHLKTIITILLMLITTSLARYNSFGEGGGGGRRVEMTPDVYSSPSSQVNNQGMEGTTTG
Sbjct: 1   MYHLKTIITILLMLITTSLARYNSFGEGGGGGRRVEMTPDVYSSPSSQVNNQGMEGTTTG 60

Query: 61  ATGSAHGPNGEYGWGWGAGPRSGWGYGYGSSHSPTGFGRGYGFGYGIGSGSGSGYGYGSG 120
           ATGSAHGPNGEYGWGWGAGPRSGWGYGYGSSHSPTGFGRGYGFGYGIGSGSGSGYGYGSG
Sbjct: 61  ATGSAHGPNGEYGWGWGAGPRSGWGYGYGSSHSPTGFGRGYGFGYGIGSGSGSGYGYGSG 120

Query: 121 GGTSAGGYGYGAGGAHGGGGYGSPSNHG 149
           GGTSAGGYGYGAGGAHGGGGYGSPSNHG
Sbjct: 121 GGTSAGGYGYGAGGAHGGGGYGSPSNHG 148

[Close]

BLAST of Spo15007.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C2X7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g161320 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.700e-35
Identity = 102/142 (71.83%), Postives = 109/142 (76.76%), Query Frame = 1


		  
Query: 13  MLITTSLARYNSFGEGGGGGRRVEMTPD----VYSSPSSQVNNQGMEGTTTGATGSAHGP 72
           ML+T SLARYNSFGEG  G R    +      V+SSP+    NQ  E T TGA GSAHGP
Sbjct: 1   MLVTISLARYNSFGEGHEGDRMKTSSSSQQETVFSSPTI---NQDSEPTPTGAVGSAHGP 60

Query: 73  NGEYGWGWGAGPRSGWGYGYGSSHSPTGFGRGYGFGYGIGSGSGSGYGYGSGGGTSAGGY 132
           N +YGWGWGAGPRSGWGYGYGSSH+PTGF RGYGFGYG GSGSGSGYGYG+GGG  A GY
Sbjct: 61  NWDYGWGWGAGPRSGWGYGYGSSHAPTGFARGYGFGYGSGSGSGSGYGYGTGGG-GASGY 120

Query: 133 GYGAGGAH---GGGGYGSPSNH 148
           GYGAGGAH   GGGG GSPSNH
Sbjct: 121 GYGAGGAHGGSGGGGGGSPSNH 138

[Close]

BLAST of Spo15007.1 vs. UniProtKB/TrEMBL
Match: K7N449_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G177300 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.100e-19
Identity = 77/148 (52.03%), Postives = 93/148 (62.84%), Query Frame = 1


		  
Query: 2   YHLKTIITILLMLITTSLARYNSFGEGGGGGRRVEMTPDVYSSPSSQVNNQGMEGTTTGA 61
           Y LK +   LL LIT++ A        GGG R++        +P        + GT TGA
Sbjct: 6   YTLKHLALFLLFLITSTSAA------AGGGRRKLRFDMSSGGAP--------LAGTPTGA 65

Query: 62  TGSAHGPNGEYGWGWGAGPRSGWGYGYGSSHSPTGFGRGYGFGYGIGSGSGSGYGYGSGG 121
           TGS HG N +Y WGWG+GP +G+GYG GS  SPTGF RGYG+G+G G+GSGSGYGYGSGG
Sbjct: 66  TGSGHGANWDYSWGWGSGPGTGYGYGSGSGRSPTGFARGYGYGFGSGTGSGSGYGYGSGG 125

Query: 122 GTSAGGYGYGAG-GAHGGGGYGSPSNHG 149
           G  AGGYG G+G G  GGGGY   +  G
Sbjct: 126 GAHAGGYGSGSGSGNSGGGGYDDKNGGG 139

[Close]

BLAST of Spo15007.1 vs. UniProtKB/TrEMBL
Match: W9S1L3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017080 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.800e-18
Identity = 76/144 (52.78%), Postives = 88/144 (61.11%), Query Frame = 1


		  
Query: 10  ILLMLITTSLARYNSFGEGGGGGRRVEMTPDVYSSPSSQVNNQGMEGTTTGATGSAHGPN 69
           ILL+L  T  A Y   G GGG G+R+                +G  G   GA+GSAHGPN
Sbjct: 15  ILLLLTGTCFAFYTGGGGGGGSGQRMS------------TEQEGGTGAPRGASGSAHGPN 74

Query: 70  GEYGWGWGAGPRSGWGYGYGSSHSPTGFGRGYGFGY----GIGSGSGSGYGYGSGG-GTS 129
            +Y WGWG+ P +GWGYG GS  SPTGFGRG+GFG+    G GSGSGSG+GYGSGG G  
Sbjct: 75  WDYSWGWGSSPGAGWGYGSGSGRSPTGFGRGFGFGFGSGSGSGSGSGSGFGYGSGGDGAR 134

Query: 130 AGGYGYGAGGAHGGGGYGSPSNHG 149
            GG GYGAG  + GGG G  S  G
Sbjct: 135 GGGNGYGAGSGNSGGGGGGGSGSG 146

[Close]

BLAST of Spo15007.1 vs. UniProtKB/TrEMBL
Match: A0A0A0KXP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025120 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.800e-18
Identity = 76/151 (50.33%), Postives = 94/151 (62.25%), Query Frame = 1


		  
Query: 2   YHLKTIITILLMLITTSLARYNSFGEGGGGGRRVEMTPDV-YSSPSSQVNNQGMEGTTTG 61
           +HL ++  +L +L ++S          G   R++   PD+ + SPS      G  G  TG
Sbjct: 7   FHLSSLFFLLFVLTSSSTVSC------GATPRKLLNFPDMSWGSPSG--GGGGGNGNPTG 66

Query: 62  ATGSAHGPNGEYGWGWGAGPRSGWGYGYGSSHSPTGFGRGYGFGYGIGSGSGSGYGYGSG 121
           A GS HGPN +Y WGWG+ P SGWG+G GS  SPTGFG+GYG+G+G GSGSGSGYGYGSG
Sbjct: 67  AYGSGHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSG 126

Query: 122 -GGTSAGGYGYG-----AGGAHGGGGYGSPS 146
            GG   GGYG G     +GG   GGGYG PS
Sbjct: 127 SGGAHGGGYGSGSGYGNSGGGGSGGGYGGPS 149

[Close]

BLAST of Spo15007.1 vs. TAIR (Arabidopsis)
Match: AT5G61660.1 (glycine-rich protein)

HSP 1 Score: 84.7 bits (208), Expect = 5.100e-17
Identity = 59/94 (62.77%), Postives = 66/94 (70.21%), Query Frame = 1


		  
Query: 56  GTTTGATGSAHGPNGEYGWGWGAGPRSGWGYGYGSSHSPTGFGRGYGFGYGIGSGSGSGY 115
           G   G +GS  GPN EY WGWG+ P SGWGYG GS  SPTG+GRG G+GYG GSGSG+GY
Sbjct: 28  GNMPGESGSGRGPNWEYNWGWGSAPGSGWGYGAGSGRSPTGWGRGSGYGYGSGSGSGTGY 87

Query: 116 GYGS-GGGTSAGGYGYGAGGAHGGGGYGSPSNHG 149
           GYGS GGG   GGYGYG+G    GGG G    +G
Sbjct: 88  GYGSGGGGARGGGYGYGSGNGRSGGGGGGGGFNG 121

The following BLAST results are available for this feature:

BLAST of Spo15007.1 vs. NCBI nr
BLAST of Spo15007.1 vs. UniProtKB/TrEMBL
BLAST of Spo15007.1 vs. ExPASy Swiss-Prot
BLAST of Spo15007.1 vs. TAIR (Arabidopsis)

BLAST of Spo15007.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902227861\|gb\|KNA20859.1\|	8.4e-70	100.	hypothetical protein SOVF_0483...	[more]
gi\|731345581\|ref\|XP_010683992.1\|	2.7e-36	68.1	PREDICTED: glycine-rich cell w...	[more]
gi\|870854708\|gb\|KMT06463.1\|	3.9e-35	71.8	hypothetical protein BVRB_7g16...	[more]
gi\|356576179\|ref\|XP_003556211.1\|	8.8e-19	52.0	PREDICTED: glycine-rich cell w...	[more]
gi\|1009121799\|ref\|XP_015877656.1\|	2.6e-18	52.9	PREDICTED: glycine-rich cell w...	[more]

BLAST of Spo15007.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RPN7_SPIOL	5.8e-70	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C2X7_BETVU	2.7e-35	71.8	Uncharacterized protein OS=Bet...	[more]
K7N449_SOYBN	6.1e-19	52.0	Uncharacterized protein OS=Gly...	[more]
W9S1L3_9ROSA	1.8e-18	52.7	Uncharacterized protein OS=Mor...	[more]
A0A0A0KXP2_CUCSA	8.8e-18	50.3	Uncharacterized protein OS=Cuc...	[more]

BLAST of Spo15007.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo15007.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G61660.1	5.1e-17	62.7	glycine-rich protein	[more]