Spo15266.1 (mRNA) | SpinachBase

Overview


Name	Spo15266.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr6 : 19662320 .. 19663374 (+)
Sequence length	814

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACACGTTCGACACTTATAAAAGTAAGAAAAATATTACATCGACACATATCAAACGCGGTCTAAACTTATAAAAAACCTAACATTCACTAATAATACCCTAAATTACAATAAAATTAAAAGTGTGGAAATGCTATGTGAGGTCATACCAATTGCAATTGATGAGAATTTATGTGGCGGTTAACCGCTATTTATAGTGTGGGCGTTTTCAAGTTAGGTAGATGGTAGCCAACTCAGTTTATAAGCTTCATTTCTTGAATTCAATATTCTCAAACCAAACCCCCAAAAAATATCCCAATTTTTGTTTAAAAAATGGGAAGAAATAAAAGTTTTAATCTTATCATCATTCTCCTATTTTCCTTCATTTTATCTACTATTGCATCAAGTAAGTTCCTTAACTTCTGAATTGTTATTCCAATTATTCATTACAAAAACTTTAACTTTATAATTATTTTTAACTCCGTATTAGGAAGCTTGATTGTGAATCAAAATCATGCAGAATCAACACCCCGTGTTCTTCTTGCTCAGGTAATTAATATTAATTAATAATTCTCCTTTTTCTATTATGACTTATTTATGTTTATTATTATTGGATTATTTGAGTAAATTGGTAATTAAATTTAAAATAAAATTCAGGCAGAAGTTGATTTGGGTGTTGTTTATTAATTATTATGGTTGGGTTCAGAAAAATGGAAGAATGGATTTGGAAGTGAATGATTATCCAGGAACTGGAGCTAATAGCAATCATGATCCAGATAAGCCAAAGAATCCAGGAAATAGTGGTTAATTTTGATCCTAATTTCTTATTTTTATGTCTGTTTTATTTGTTTGTACGATGATGTTATTGTATAGCTTTCTTTCAATTGTATAATCATTATGTACTGCAAAGTTATTGCTTTTCTATTTTATCGAACTGTTAATTTGTAATTTTGTATGAACAACTAATTTTATAAGTGTTGTTTTTTGTGGTTGTATATTTTTCTTAAGAGGGGAAATTTAGTGCCAATCCATTTAAAATAACTATTAACACATACTTCCTTTGAACAAAGTACTCG

mRNA sequence

CAAACACGTTCGACACTTATAAAAGTAAGAAAAATATTACATCGACACATATCAAACGCGGTCTAAACTTATAAAAAACCTAACATTCACTAATAATACCCTAAATTACAATAAAATTAAAAGTGTGGAAATGCTATGTGAGGTCATACCAATTGCAATTGATGAGAATTTATGTGGCGGTTAACCGCTATTTATAGTGTGGGCGTTTTCAAGTTAGGTAGATGGTAGCCAACTCAGTTTATAAGCTTCATTTCTTGAATTCAATATTCTCAAACCAAACCCCCAAAAAATATCCCAATTTTTGTTTAAAAAATGGGAAGAAATAAAAGTTTTAATCTTATCATCATTCTCCTATTTTCCTTCATTTTATCTACTATTGCATCAAGAAGCTTGATTGTGAATCAAAATCATGCAGAATCAACACCCCGTGTTCTTCTTGCTCAGAAAAATGGAAGAATGGATTTGGAAGTGAATGATTATCCAGGAACTGGAGCTAATAGCAATCATGATCCAGATAAGCCAAAGAATCCAGGAAATAGTGGTTAATTTTGATCCTAATTTCTTATTTTTATGTCTGTTTTATTTGTTTGTACGATGATGTTATTGTATAGCTTTCTTTCAATTGTATAATCATTATGTACTGCAAAGTTATTGCTTTTCTATTTTATCGAACTGTTAATTTGTAATTTTGTATGAACAACTAATTTTATAAGTGTTGTTTTTTGTGGTTGTATATTTTTCTTAAGAGGGGAAATTTAGTGCCAATCCATTTAAAATAACTATTAACACATACTTCCTTTGAACAAAGTACTCG

Coding sequence (CDS)

ATGGGAAGAAATAAAAGTTTTAATCTTATCATCATTCTCCTATTTTCCTTCATTTTATCTACTATTGCATCAAGAAGCTTGATTGTGAATCAAAATCATGCAGAATCAACACCCCGTGTTCTTCTTGCTCAGAAAAATGGAAGAATGGATTTGGAAGTGAATGATTATCCAGGAACTGGAGCTAATAGCAATCATGATCCAGATAAGCCAAAGAATCCAGGAAATAGTGGTTAA

Protein sequence

MGRNKSFNLIIILLFSFILSTIASRSLIVNQNHAESTPRVLLAQKNGRMDLEVNDYPGTGANSNHDPDKPKNPGNSG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo15266	Spo15266	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo15266.1	Spo15266.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo15266.1.exon.1	Spo15266.1.exon.1	exon
Spo15266.1.exon.2	Spo15266.1.exon.2	exon
Spo15266.1.exon.3	Spo15266.1.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo15266.1.utr5p.1	Spo15266.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo15266.1.CDS.1	Spo15266.1.CDS.1	CDS
Spo15266.1.CDS.2	Spo15266.1.CDS.2	CDS
Spo15266.1.CDS.3	Spo15266.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo15266.1.utr3p.1	Spo15266.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo15266.1 vs. NCBI nr
Match: gi|902167873|gb|KNA07429.1| (hypothetical protein SOVF_171990 [Spinacia oleracea])

HSP 1 Score: 149.4 bits (376), Expect = 2.500e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


		  
Query: 1  MGRNKSFNLIIILLFSFILSTIASRSLIVNQNHAESTPRVLLAQKNGRMDLEVNDYPGTG 60
          MGRNKSFNLIIILLFSFILSTIASRSLIVNQNHAESTPRVLLAQKNGRMDLEVNDYPGTG
Sbjct: 1  MGRNKSFNLIIILLFSFILSTIASRSLIVNQNHAESTPRVLLAQKNGRMDLEVNDYPGTG 60

Query: 61 ANSNHDPDKPKNPGNSG 78
          ANSNHDPDKPKNPGNSG
Sbjct: 61 ANSNHDPDKPKNPGNSG 77

[Close]

BLAST of Spo15266.1 vs. NCBI nr
Match: gi|870844480|gb|KMS97438.1| (hypothetical protein BVRB_5g126950 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.1 bits (144), Expect = 2.000e-6
Identity = 44/91 (48.35%), Postives = 55/91 (60.44%), Query Frame = 1


		  
Query: 4  NKSFNLIIILLF-SFILSTIA---SRSLIVNQNHAESTP-RVLLAQK------------- 63
          N   NLII++ F + I S++A   SRSLI+NQN  ES+  RVLL Q              
Sbjct: 3  NNKINLIILIFFCASIFSSLAVPSSRSLIMNQNKLESSSSRVLLTQAAAKVGIDYGWTKE 62

Query: 64 ----NGRMDLEVNDYPGTGANSNHDPDKPKN 73
               GRMD+E+NDYPGTGAN+NH+P KP N
Sbjct: 63 TGKTKGRMDIELNDYPGTGANNNHEP-KPGN 92

[Close]

BLAST of Spo15266.1 vs. NCBI nr
Match: gi|870851880|gb|KMT03870.1| (hypothetical protein BVRB_8g188070 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 58.9 bits (141), Expect = 4.400e-6
Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = 1


		  
Query: 4  NKSFNLIIILLFS----FILSTIASRSLIVNQNHAESTP-RVLLAQ-------------- 63
          N   NLII++ F     F L+  +SRSLI+NQN  +S+  RVLL Q              
Sbjct: 3  NNKINLIILIFFCASIFFSLAVPSSRSLIMNQNKLKSSSSRVLLTQTAAKVGIDYGWTKE 62

Query: 64 ------KNGRMDLEVNDYPGTGANSNHDPDKPKN 73
                  GRMD+E+NDYPGTGAN+NH+P KP N
Sbjct: 63 TGKTKASKGRMDIELNDYPGTGANNNHEP-KPGN 95

[Close]

BLAST of Spo15266.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJJ8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_171990 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.700e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


		  
Query: 1  MGRNKSFNLIIILLFSFILSTIASRSLIVNQNHAESTPRVLLAQKNGRMDLEVNDYPGTG 60
          MGRNKSFNLIIILLFSFILSTIASRSLIVNQNHAESTPRVLLAQKNGRMDLEVNDYPGTG
Sbjct: 1  MGRNKSFNLIIILLFSFILSTIASRSLIVNQNHAESTPRVLLAQKNGRMDLEVNDYPGTG 60

Query: 61 ANSNHDPDKPKNPGNSG 78
          ANSNHDPDKPKNPGNSG
Sbjct: 61 ANSNHDPDKPKNPGNSG 77

[Close]

BLAST of Spo15266.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BBP1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g126950 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.400e-6
Identity = 44/91 (48.35%), Postives = 55/91 (60.44%), Query Frame = 1


		  
Query: 4  NKSFNLIIILLF-SFILSTIA---SRSLIVNQNHAESTP-RVLLAQK------------- 63
          N   NLII++ F + I S++A   SRSLI+NQN  ES+  RVLL Q              
Sbjct: 3  NNKINLIILIFFCASIFSSLAVPSSRSLIMNQNKLESSSSRVLLTQAAAKVGIDYGWTKE 62

Query: 64 ----NGRMDLEVNDYPGTGANSNHDPDKPKN 73
               GRMD+E+NDYPGTGAN+NH+P KP N
Sbjct: 63 TGKTKGRMDIELNDYPGTGANNNHEP-KPGN 92

[Close]

BLAST of Spo15266.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BQT7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g188070 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.100e-6
Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = 1


		  
Query: 4  NKSFNLIIILLFS----FILSTIASRSLIVNQNHAESTP-RVLLAQ-------------- 63
          N   NLII++ F     F L+  +SRSLI+NQN  +S+  RVLL Q              
Sbjct: 3  NNKINLIILIFFCASIFFSLAVPSSRSLIMNQNKLKSSSSRVLLTQTAAKVGIDYGWTKE 62

Query: 64 ------KNGRMDLEVNDYPGTGANSNHDPDKPKN 73
                  GRMD+E+NDYPGTGAN+NH+P KP N
Sbjct: 63 TGKTKASKGRMDIELNDYPGTGANNNHEP-KPGN 95

The following BLAST results are available for this feature:

BLAST of Spo15266.1 vs. NCBI nr
BLAST of Spo15266.1 vs. UniProtKB/TrEMBL
BLAST of Spo15266.1 vs. ExPASy Swiss-Prot
BLAST of Spo15266.1 vs. TAIR (Arabidopsis)

BLAST of Spo15266.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3


Match Name	E-value	Identity	Description
gi\|902167873\|gb\|KNA07429.1\|	2.5e-33	100.	hypothetical protein SOVF_1719...	[more]
gi\|870844480\|gb\|KMS97438.1\|	2.0e-6	48.3	hypothetical protein BVRB_5g12...	[more]
gi\|870851880\|gb\|KMT03870.1\|	4.4e-6	44.6	hypothetical protein BVRB_8g18...	[more]

BLAST of Spo15266.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3


Match Name	E-value	Identity	Description
A0A0K9QJJ8_SPIOL	1.7e-33	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BBP1_BETVU	1.4e-6	48.3	Uncharacterized protein OS=Bet...	[more]
A0A0J8BQT7_BETVU	3.1e-6	44.6	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo15266.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo15266.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33474	FAMILY NOT NAMED	coord: 1..73 score: 6.5
None	No IPR available	PANTHER	PTHR33474:SF2	SUBFAMILY NOT NAMED	coord: 1..73 score: 6.5