Spo15388.1 (mRNA) | SpinachBase

Overview


Name	Spo15388.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr6 : 10274625 .. 10274873 (+)
Sequence length	249

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGACCAAGTGTGTACTAGTACTACTTCGTGCTGGCACCAGCCTTGGCAGGATGCAACCATACTATCGCCACCCTCCTACGTTGCCGCGGCGGCCACCCTTTCGAGCTCCTCCGCCACCTCGAGTGTTATTGATACCACCAGCAACGGCGAGGTTAAGAGGGCTAGGGCGGCCCCACCGGCGGCTCTTAGAGATAAGGACTCTTTCCGGACTGCTATGTTCTTGAGCTGCTGGACGTGCTCCTAG

mRNA sequence

ATGTATGACCAAGTGTGTACTAGTACTACTTCGTGCTGGCACCAGCCTTGGCAGGATGCAACCATACTATCGCCACCCTCCTACGTTGCCGCGGCGGCCACCCTTTCGAGCTCCTCCGCCACCTCGAGTGTTATTGATACCACCAGCAACGGCGAGGTTAAGAGGGCTAGGGCGGCCCCACCGGCGGCTCTTAGAGATAAGGACTCTTTCCGGACTGCTATGTTCTTGAGCTGCTGGACGTGCTCCTAG

Coding sequence (CDS)

ATGTATGACCAAGTGTGTACTAGTACTACTTCGTGCTGGCACCAGCCTTGGCAGGATGCAACCATACTATCGCCACCCTCCTACGTTGCCGCGGCGGCCACCCTTTCGAGCTCCTCCGCCACCTCGAGTGTTATTGATACCACCAGCAACGGCGAGGTTAAGAGGGCTAGGGCGGCCCCACCGGCGGCTCTTAGAGATAAGGACTCTTTCCGGACTGCTATGTTCTTGAGCTGCTGGACGTGCTCCTAG

Protein sequence

MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAPPAALRDKDSFRTAMFLSCWTCS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo15388	Spo15388	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo15388.1	Spo15388.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo15388.1.exon.1	Spo15388.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo15388.1.CDS.1	Spo15388.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo15388.1 vs. NCBI nr
Match: gi|902168433|gb|KNA07502.1| (hypothetical protein SOVF_171240 [Spinacia oleracea])

HSP 1 Score: 164.9 bits (416), Expect = 6.100e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1

		  
Query: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60
          MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP
Sbjct: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60

Query: 61 PAALRDKDSFRTAMFLSCWTCS 83
          PAALRDKDSFRTAMFLSCWTCS
Sbjct: 61 PAALRDKDSFRTAMFLSCWTCS 82

[Close]

BLAST of Spo15388.1 vs. NCBI nr
Match: gi|870852561|gb|KMT04476.1| (hypothetical protein BVRB_8g181450 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 67.4 bits (163), Expect = 1.300e-8
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 1

		  
Query: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60
          M++Q   S++S W +PWQ AT  S       A T  SS AT S+ DT + GEV   RA  
Sbjct: 1  MHEQA--SSSSFW-EPWQRATTSSTSVATTTATTTPSSFATPSITDTANKGEVA-PRAGC 60

Query: 61 PAALRDKDSFRTAMFLSCWTCS 83
           A +RD+D+FRTAMFLSCWTCS
Sbjct: 61 KAVVRDQDAFRTAMFLSCWTCS 78

[Close]

BLAST of Spo15388.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJT1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_171240 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.300e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1

		  
Query: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60
          MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP
Sbjct: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60

Query: 61 PAALRDKDSFRTAMFLSCWTCS 83
          PAALRDKDSFRTAMFLSCWTCS
Sbjct: 61 PAALRDKDSFRTAMFLSCWTCS 82

[Close]

BLAST of Spo15388.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ENB0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g181450 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.300e-9
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 1

		  
Query: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60
          M++Q   S++S W +PWQ AT  S       A T  SS AT S+ DT + GEV   RA  
Sbjct: 1  MHEQA--SSSSFW-EPWQRATTSSTSVATTTATTTPSSFATPSITDTANKGEVA-PRAGC 60

Query: 61 PAALRDKDSFRTAMFLSCWTCS 83
           A +RD+D+FRTAMFLSCWTCS
Sbjct: 61 KAVVRDQDAFRTAMFLSCWTCS 78

The following BLAST results are available for this feature:

BLAST of Spo15388.1 vs. NCBI nr
BLAST of Spo15388.1 vs. UniProtKB/TrEMBL
BLAST of Spo15388.1 vs. ExPASy Swiss-Prot
BLAST of Spo15388.1 vs. TAIR (Arabidopsis)

BLAST of Spo15388.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902168433\|gb\|KNA07502.1\|	6.1e-38	100.	hypothetical protein SOVF_1712...	[more]
gi\|870852561\|gb\|KMT04476.1\|	1.3e-8	51.2	hypothetical protein BVRB_8g18...	[more]

BLAST of Spo15388.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QJT1_SPIOL	4.3e-38	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8ENB0_BETVU	9.3e-9	51.2	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo15388.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo15388.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description