Spo15455.1 (mRNA)

Overview
NameSpo15455.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 107583143 .. 107584318 (+)
Sequence length1024
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTAGAGTTTTTTCCCTTTAAAAAAAATAACAAATTAAATTTGGAATGCAAAAATGCAAAAACATACGGAATGAAAAATGCTCATCTAGCTATGAATTGAAATAGTGCACACATCACTTACTTTCTTTCTCATCTTAACTCATCAGCAAAATCATTCAAACTCTATCCGATTTAACACAAAGTTGAAGTTTCAGATCCAATGCTACCAATTAATTATGCCTAAAGTATCTCAAAATCAGGTAATTATAGTGTCTATATTCTCAAGGCTTTTCTTAATTAGAAAATTATGTGAGTTTGGTTTATGTTTAATTGGGTTGAGTTATTTTCCTTTTTTAGAGTTTCTTGCTTGAATTCTGGAGTGAAAATGAGTAAATATACAGAATAATTGCAGAGAACAGGGACATACCTTGCGATTTGCCGGCGTTTTCCTCGCCACCACCGAAGCCGTTTTACCTCTCCTAGCCTTCACTCCCTTCGCCGCCGCTGCCGGAGCTTGTCCCGCCTTAGCTGCTCCTGGATCTCCCATACTCGTCGGCCGACCACTTTAACTCCCATTCGCTTCTCTTCTAGCCGAATTATGGGTGGAGCGGAGGTGGAGCACCACGGGTATCATTGCCGGAATTATGGGTTGAGCGGAGGTGGAGCAGCACGGGTCATCATTGCGGGTCTGACATTTCTCTTTTTTGCCGGAATTCTAGGTTTAGCGTAGGCCCTTTTTTTGGAATTCTAGGTTGAAGGTGGCCGGAAATTTTTGCTGGATTCTGGGTTGAAGGTGCCTGAATCTGGTTGTTGGGTGTATTTACCTCTACTGTATTGATGGAGGGAGTTGGATTGATGGGGTAAAAAATGTAAAAAAGTAAAGGGGTAAATATAGAGAGGAGTAGTTGTGGAATTTAATAGGGCGAGTGAGTATTTATGGGGCGGAGTTTAGCGCTCCACCTTTTAATATTGTAAGACCATGTGCATCCTTGACCTTCGGTCAAGTGTCAAATAATATATATCTCTCATCCTTCTCCTTCTTCCACCTCATATTCCACTAACTTGACATACCACTTGTAACACCCCGACAATTCTCTCTTTTCTAAAATAACCTTTTTATATAAAACGTAGAGAATTATCAAGGCATTATCGCCCGTGTGAAAACGTAACGGCTTATTCAGAATTTTACAGCGGAA

mRNA sequence

TTCTAGAGTTTTTTCCCTTTAAAAAAAATAACAAATTAAATTTGGAATGCAAAAATGCAAAAACATACGGAATGAAAAATGCTCATCTAGCTATGAATTGAAATAGTGCACACATCACTTACTTTCTTTCTCATCTTAACTCATCAGCAAAATCATTCAAACTCTATCCGATTTAACACAAAGTTGAAGTTTCAGATCCAATGCTACCAATTAATTATGCCTAAAGTATCTCAAAATCAGAGAACAGGGACATACCTTGCGATTTGCCGGCGTTTTCCTCGCCACCACCGAAGCCGTTTTACCTCTCCTAGCCTTCACTCCCTTCGCCGCCGCTGCCGGAGCTTGTCCCGCCTTAGCTGCTCCTGGATCTCCCATACTCGTCGGCCGACCACTTTAACTCCCATTCGCTTCTCTTCTAGCCGAATTATGGGTGGAGCGGAGGTGGAGCACCACGGGTATCATTGCCGGAATTATGGGTTGAGCGGAGGTGGAGCAGCACGGGTCATCATTGCGGGTCTGACATTTCTCTTTTTTGCCGGAATTCTAGGTTTAGCGTAGGCCCTTTTTTTGGAATTCTAGGTTGAAGGTGGCCGGAAATTTTTGCTGGATTCTGGGTTGAAGGTGCCTGAATCTGGTTGTTGGGTGTATTTACCTCTACTGTATTGATGGAGGGAGTTGGATTGATGGGGTAAAAAATGTAAAAAAGTAAAGGGGTAAATATAGAGAGGAGTAGTTGTGGAATTTAATAGGGCGAGTGAGTATTTATGGGGCGGAGTTTAGCGCTCCACCTTTTAATATTGTAAGACCATGTGCATCCTTGACCTTCGGTCAAGTGTCAAATAATATATATCTCTCATCCTTCTCCTTCTTCCACCTCATATTCCACTAACTTGACATACCACTTGTAACACCCCGACAATTCTCTCTTTTCTAAAATAACCTTTTTATATAAAACGTAGAGAATTATCAAGGCATTATCGCCCGTGTGAAAACGTAACGGCTTATTCAGAATTTTACAGCGGAA

Coding sequence (CDS)

ATGCCTAAAGTATCTCAAAATCAGAGAACAGGGACATACCTTGCGATTTGCCGGCGTTTTCCTCGCCACCACCGAAGCCGTTTTACCTCTCCTAGCCTTCACTCCCTTCGCCGCCGCTGCCGGAGCTTGTCCCGCCTTAGCTGCTCCTGGATCTCCCATACTCGTCGGCCGACCACTTTAACTCCCATTCGCTTCTCTTCTAGCCGAATTATGGGTGGAGCGGAGGTGGAGCACCACGGGTATCATTGCCGGAATTATGGGTTGAGCGGAGGTGGAGCAGCACGGGTCATCATTGCGGGTCTGACATTTCTCTTTTTTGCCGGAATTCTAGGTTTAGCGTAG

Protein sequence

MPKVSQNQRTGTYLAICRRFPRHHRSRFTSPSLHSLRRRCRSLSRLSCSWISHTRRPTTLTPIRFSSSRIMGGAEVEHHGYHCRNYGLSGGGAARVIIAGLTFLFFAGILGLA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo15455Spo15455gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo15455.1Spo15455.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo15455.1.exon.1Spo15455.1.exon.1exon
Spo15455.1.exon.2Spo15455.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo15455.1.utr5p.1Spo15455.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo15455.1.CDS.1Spo15455.1.CDS.1CDS
Spo15455.1.CDS.2Spo15455.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo15455.1.utr3p.1Spo15455.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo15455.1 vs. NCBI nr
Match: gi|902161081|gb|KNA06517.1| (hypothetical protein SOVF_180380, partial [Spinacia oleracea])

HSP 1 Score: 214.9 bits (546), Expect = 7.100e-53
Identity = 107/113 (94.69%), Postives = 108/113 (95.58%), Query Frame = 1 

		  

Query: 1   MPKVSQNQRTGTYLAICRRFPRHHRSRFTSPSLHSLRRRCRSLSRLSCSWISHTRRPTTL 60
           MPKVSQNQRTGTYLAICR FPRHHRSRF SPSLHSLRRRCRSLSRLSC WISHTRRPTTL
Sbjct: 24  MPKVSQNQRTGTYLAICRLFPRHHRSRFISPSLHSLRRRCRSLSRLSCCWISHTRRPTTL 83

Query: 61  TPIRFSSSRIMGGAEVEHHGYHCRNYGLSGGGAARVIIAGLTFLFFAGILGLA 114
           TP+RFSSSRIMGGAEVEHHGYHCRNYGLS GGA RVIIAGLTFLFFAGILGLA
Sbjct: 84  TPLRFSSSRIMGGAEVEHHGYHCRNYGLSEGGAPRVIIAGLTFLFFAGILGLA 136
[Close]
BLAST of Spo15455.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QH05_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_180380 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.000e-53
Identity = 107/113 (94.69%), Postives = 108/113 (95.58%), Query Frame = 1 

		  

Query: 1   MPKVSQNQRTGTYLAICRRFPRHHRSRFTSPSLHSLRRRCRSLSRLSCSWISHTRRPTTL 60
           MPKVSQNQRTGTYLAICR FPRHHRSRF SPSLHSLRRRCRSLSRLSC WISHTRRPTTL
Sbjct: 24  MPKVSQNQRTGTYLAICRLFPRHHRSRFISPSLHSLRRRCRSLSRLSCCWISHTRRPTTL 83

Query: 61  TPIRFSSSRIMGGAEVEHHGYHCRNYGLSGGGAARVIIAGLTFLFFAGILGLA 114
           TP+RFSSSRIMGGAEVEHHGYHCRNYGLS GGA RVIIAGLTFLFFAGILGLA
Sbjct: 84  TPLRFSSSRIMGGAEVEHHGYHCRNYGLSEGGAPRVIIAGLTFLFFAGILGLA 136
The following BLAST results are available for this feature:
BLAST of Spo15455.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902161081|gb|KNA06517.1|7.1e-5394.6hypothetical protein SOVF_1803... [more]
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BLAST of Spo15455.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QH05_SPIOL5.0e-5394.6Uncharacterized protein (Fragm... [more]
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BLAST of Spo15455.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15455.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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