Spo15939.1 (mRNA) | SpinachBase

Overview


Name	Spo15939.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Serine/arginine-rich splicing factor 7
Location	chr1 : 20918441 .. 20921305 (-)
Sequence length	779

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGAATTGCAATTTGACAGTCCTAGGCATAACTGAAATAAAAGGAATCGAAGAGGGAGTTGAAGTTGAAAATAGGCAGAAGACTAAAACCCTAAAAAACAGACCCAAAAGTAAGAGGTTTCAAACTGTCTCCGGAGAATTGAGAAGCTTGCTTTCGCTCGGAGGTTTTTCTCTCTTCACTCAGGTTCACATCTCTCTCTTCCTCTCTCGTCTAGATTGCTTTTGTCTGCAATTGTTATCAGTTCTATAAGTCACCGCCAGATCCATGTTGAAGGTTTCACTCGTCGGTCTTCCAAACCCTAATTCCTGAATTCATTCCGTTTTCTTGTTCTTCGCATTAACTTTGTGTTGATTTTCGTTAACTTTCTTAATCTTTTCGATTCAATTGATAGGAAAGTCTCGGACTTTTTGTTGTTAGGTGTTAATTCTGCACAATGTCGCGTGTATACGTTGGAAACTTGGATCCACGGGTGACTGAGCGAGAGCTTGAAGACGAGTTTCGTGTTTTCGGAGTTATTCGAAGGTCAGGCTTCCTCAATTGGATCTTTGTTCTTGATTAGTTTTTTATTAAATTGAAAATTCAAAGAGAAGAGAGGAGGTCAAGGTTTTGTTTTTTTATGCTGATTTCGACTTGTGTCAGTTAGTTTTTGTCTAATCCCTTGAAATCTGTTGTGATTTGCAGTGTTTGGGTTGCTAGAAGACCTCCTGGCTATGCATTCATTGATTTTGATGATACTAGGGACGCCAAAGATGCCATTCATGCATTAGATGGTATTTCCTTTACTTAAATTTATGGACTTGATGATTATTAGGATAGACTCTAGGCGTGGTTGTTCTACCGTCTTATGTTATACATTTGATTTCTGCAAATTCAATTTTTTTCGACTCTATTCATGATCTATCTTTGTTTTTTTTTTTAATGGGGGTGGCTCCTAGGAGATAGGGTGAAGATGGTCTTTCATAATAGCCTTTTGTTGTCCTCTGTCTTTTACTGAATTATTGCTTCAACATCTTTTTTGTGTCTGTATATGTGTGTGCAATTTGTGCACTGCTACAACAGGTGTGTGTGCATTTGCGTGCATGTTTTTTGTGTTTCAGTAATGATTTTTTTTTTGCCTTAAACATTTAATATTTTATGAGATGGATTTGTTCAGAGAAATATATAAGATGTTGACTTAGTAACCCTCTCCACTCTCCAAGAATATTAAGAATCAAGAGATAAAGTGTTCATAGCATTGATCATTTTGACATTTTTACTTTCAAAGTGTTTTGGTTGTTTCTTTGGTAATTTAAATTGTCCCAATGAGAAACATTAGTACACCTCAAAATAACTGATCTTAACAATTAACTTGGAAGATCCAGTTATCTAACTTCCCCACCCTTCCCCAAGAAATTGTTAAGTATAAATTTCCGTACTGTAACAGGATATGCAACTTGTATTCTCCTTTTATGCTCTGCATCCAGGTCAATCTCTTTGGCCTTGATGTTTTAAATGAGCACATATGTATGTCCTTGCTTCAACTTTCTGTGATTATTCCATGTTCTAGAATATCCCTTTTTTGGCTTCAAATGATCTATTTCGCGACTGTTGCATTGAGGTTGACTACTATTTCCATTTCTATTGCACCCTATCAAAGCCAGTGATGTTCATCTATGAATCCATCTATAAATGTTTATGGAGGCCTTAGCTTGTTGACGAGGTACATGTTAACCATTCTTGTATGACATTATCAGGTCTCTTTGTCACTGAGTATTAGCTTAGTGGTTCATACTTAGCATACAGTTTTTGTGTCTTAGTTTGTTTTGGATGTATGGATGTAGTATCTAACATAAGTTAATCCTGTGTTTCATTTTCAGTTGCCGTTACCGAGTAATTGTGTTTCTTATCATTGGTGTCCTTGCTCTTTTTCTTCCCTCAGGTAAAAATGGCTGGAGAGTTGAGCTTTCACACAATTCTAGAGGTGGGGGTGGCGGTCGTGGTGGTGGGCGAGGAGGAGGTGGTGGGCGAGGTGGGTCTGATTTGAAGTGTTATGAGTGTGGCGAGCCTGGTCATTTCGCTCGTGAATGCCGTTTACGTGTTGGTGGTGGTGGTGGTGGTGGAGGGGGAAGGCGACGCAGCCGTAGTCCAAGATACAGGAGGAGCCCAAGTTATGGTAGGAGGTATGGTCATCAAGATTATTACTGATTGTATTAGTTTTCTGGGCTTCCCTCCCATGAAAGTTAACTCCAATAAATTTATTATTCTGGTTTAAGTTTTATTCGGGGGTGAGGGAGGGATCAGCATTTCTTTGGATTTAGATATTATTATTATTATTGGCGTTTACAATTTGTATTTTTTTAGCAGGAGCTACAGTCCCCGTGGTAGATCTCCACCTCCACGCCGTCGCAGTCCCTCACCTCGTGGAAGAAGCTACAGCAGGTCACCAGCTCCTTATCGTGCTCGTGAGGAACTGCCTTATGCAAACGGGTAAATGTCCTATATGTTACTTGTGTAATTGTATGAAGTGTTGGTTTTGTCCTGCTTTTGTGTGTTGGTGTAGCTGCTACTTCTTTTCTTTAGAGTTTAGACTTGTGACCTGCCCCATTTTTCTTGCGCTGTTTTCAATACTATAGGAAAGTTATGTTATTTTAATTTATCTAGGAACCAATTATTATGGAACAGGCTGCATTTAACCTTTATGCCGTACTATGTTTGTTTGATGTGTCTTGTGGTTAAGTGTCAATGGTTTTGGGGGTTCGTGTTTAAATAATTAAATTGTGCACTTTGCACTCAAGTTAGAAGAGTCAATTTGCGAATTTATGTTGATAAACTTTTTTTATGCGTGCAGAAATGGTGTCAGGGAGAGACGTCGCAGCAGGAGCTGA

mRNA sequence

GTGGAATTGCAATTTGACAGTCCTAGGCATAACTGAAATAAAAGGAATCGAAGAGGGAGTTGAAGTTGAAAATAGGCAGAAGACTAAAACCCTAAAAAACAGACCCAAAAGTAAGAGGTTTCAAACTGTCTCCGGAGAATTGAGAAGCTTGCTTTCGCTCGGAGGTTTTTCTCTCTTCACTCAGGTGTTAATTCTGCACAATGTCGCGTGTATACGTTGGAAACTTGGATCCACGGGTGACTGAGCGAGAGCTTGAAGACGAGTTTCGTGTTTTCGGAGTTATTCGAAGTGTTTGGGTTGCTAGAAGACCTCCTGGCTATGCATTCATTGATTTTGATGATACTAGGGACGCCAAAGATGCCATTCATGCATTAGATGGTAAAAATGGCTGGAGAGTTGAGCTTTCACACAATTCTAGAGGTGGGGGTGGCGGTCGTGGTGGTGGGCGAGGAGGAGGTGGTGGGCGAGGTGGGTCTGATTTGAAGTGTTATGAGTGTGGCGAGCCTGGTCATTTCGCTCGTGAATGCCGTTTACGTGTTGGTGGTGGTGGTGGTGGTGGAGGGGGAAGGCGACGCAGCCGTAGTCCAAGATACAGGAGGAGCCCAAGTTATGGTAGGAGGAGCTACAGTCCCCGTGGTAGATCTCCACCTCCACGCCGTCGCAGTCCCTCACCTCGTGGAAGAAGCTACAGCAGGTCACCAGCTCCTTATCGTGCTCGTGAGGAACTGCCTTATGCAAACGGAAATGGTGTCAGGGAGAGACGTCGCAGCAGGAGCTGA

Coding sequence (CDS)

ATGTCGCGTGTATACGTTGGAAACTTGGATCCACGGGTGACTGAGCGAGAGCTTGAAGACGAGTTTCGTGTTTTCGGAGTTATTCGAAGTGTTTGGGTTGCTAGAAGACCTCCTGGCTATGCATTCATTGATTTTGATGATACTAGGGACGCCAAAGATGCCATTCATGCATTAGATGGTAAAAATGGCTGGAGAGTTGAGCTTTCACACAATTCTAGAGGTGGGGGTGGCGGTCGTGGTGGTGGGCGAGGAGGAGGTGGTGGGCGAGGTGGGTCTGATTTGAAGTGTTATGAGTGTGGCGAGCCTGGTCATTTCGCTCGTGAATGCCGTTTACGTGTTGGTGGTGGTGGTGGTGGTGGAGGGGGAAGGCGACGCAGCCGTAGTCCAAGATACAGGAGGAGCCCAAGTTATGGTAGGAGGAGCTACAGTCCCCGTGGTAGATCTCCACCTCCACGCCGTCGCAGTCCCTCACCTCGTGGAAGAAGCTACAGCAGGTCACCAGCTCCTTATCGTGCTCGTGAGGAACTGCCTTATGCAAACGGAAATGGTGTCAGGGAGAGACGTCGCAGCAGGAGCTGA

Protein sequence

MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDGKNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGGGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYANGNGVRERRRSRS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo15939	Spo15939	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo15939.1	Spo15939.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo15939.1.utr5p.2	Spo15939.1.utr5p.2	five_prime_UTR
Spo15939.1.utr5p.1	Spo15939.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo15939.1.CDS.5	Spo15939.1.CDS.5	CDS
Spo15939.1.CDS.4	Spo15939.1.CDS.4	CDS
Spo15939.1.CDS.3	Spo15939.1.CDS.3	CDS
Spo15939.1.CDS.2	Spo15939.1.CDS.2	CDS
Spo15939.1.CDS.1	Spo15939.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo15939.1.exon.6	Spo15939.1.exon.6	exon
Spo15939.1.exon.5	Spo15939.1.exon.5	exon
Spo15939.1.exon.4	Spo15939.1.exon.4	exon
Spo15939.1.exon.3	Spo15939.1.exon.3	exon
Spo15939.1.exon.2	Spo15939.1.exon.2	exon
Spo15939.1.exon.1	Spo15939.1.exon.1	exon

Homology

[Close]

BLAST of Spo15939.1 vs. NCBI nr
Match: gi|902203233|gb|KNA14497.1| (hypothetical protein SOVF_107020 [Spinacia oleracea])

HSP 1 Score: 374.0 bits (959), Expect = 1.600e-100
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120

Query: 121 GGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYAN 180
           GGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYAN
Sbjct: 121 GGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYAN 180

Query: 181 GNGVRERRRSRS 193
           GNGVRERRRSRS
Sbjct: 181 GNGVRERRRSRS 192

[Close]

BLAST of Spo15939.1 vs. NCBI nr
Match: gi|731362650|ref|XP_010692998.1| (PREDICTED: serine/arginine-rich splicing factor RSZ22A [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 358.2 bits (918), Expect = 8.800e-96
Identity = 189/193 (97.93%), Postives = 189/193 (97.93%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGG-GRGGSDLKCYECGEPGHFARECRLRVGGGGGG 120
           KNGWRVELSHNSRGGGGGRGGG GGGG GRGGSDLKCYECGEPGHFARECRLRV GGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGGGGGGRGRGGSDLKCYECGEPGHFARECRLRV-GGGGG 120

Query: 121 GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYA 180
           GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSP PYRAREELPYA
Sbjct: 121 GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPPPYRAREELPYA 180

Query: 181 NGNGVRERRRSRS 193
           NGNGVRERRRSRS
Sbjct: 181 NGNGVRERRRSRS 192

[Close]

BLAST of Spo15939.1 vs. NCBI nr
Match: gi|743862403|ref|XP_011031384.1| (PREDICTED: serine/arginine-rich splicing factor RSZ22A-like [Populus euphratica])

HSP 1 Score: 316.2 bits (809), Expect = 3.800e-83
Identity = 173/193 (89.64%), Postives = 178/193 (92.23%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRV+ER+LEDEFR FGVIRSVWVARRPPGYAFIDFDD RDA+DAIH LDG
Sbjct: 1   MSRVYVGNLDPRVSERDLEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAQDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGR-GGSDLKCYECGEPGHFARECRLRVGGGGGG 120
           KNGWRVELSHNSRGGGGG GGGRGGG GR GGSDLKCYECGEPGHFARECRLRVG GGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRVGSGGGG 120

Query: 121 GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYA 180
           G  RRRSRSPRYRRSPSYGRRSYSPRGRS  P+RRS SPRGRSYSRSP  YR REELPYA
Sbjct: 121 G--RRRSRSPRYRRSPSYGRRSYSPRGRS--PKRRSLSPRGRSYSRSP-QYRGREELPYA 180

Query: 181 NGNGVRERRRSRS 193
           NGNG+RERRRSRS
Sbjct: 181 NGNGIRERRRSRS 188

[Close]

BLAST of Spo15939.1 vs. NCBI nr
Match: gi|659132619|ref|XP_008466294.1| (PREDICTED: serine/arginine-rich splicing factor RSZ22A [Cucumis melo])

HSP 1 Score: 316.2 bits (809), Expect = 3.800e-83
Identity = 172/192 (89.58%), Postives = 178/192 (92.71%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRV+ERELEDEFRVFGVIRSVWVARRPPGYAFIDFDD RDA+DAIH LDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGG  GG G  GGSDLKCYECGEPGHFARECRLR GGGGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGG--GGRGRSGGSDLKCYECGEPGHFARECRLR-GGGGGGG 120

Query: 121 GGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYAN 180
            GRRRSRSPRYRRSPSYGRRSYSPRGRS  PRRRS SPRGRS+SRSP PYR REELPYAN
Sbjct: 121 AGRRRSRSPRYRRSPSYGRRSYSPRGRS--PRRRSLSPRGRSFSRSP-PYRGREELPYAN 180

Query: 181 GNGVRERRRSRS 193
           GNG+++RRRSRS
Sbjct: 181 GNGIKDRRRSRS 186

[Close]

BLAST of Spo15939.1 vs. NCBI nr
Match: gi|449437054|ref|XP_004136307.1| (PREDICTED: serine/arginine-rich splicing factor RSZ22 [Cucumis sativus])

HSP 1 Score: 315.8 bits (808), Expect = 5.000e-83
Identity = 172/197 (87.31%), Postives = 179/197 (90.86%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRV+ERELEDEFRVFGVIRSVWVARRPPGYAFIDFDD RDA+DAIH LDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGG  GG G  GGSDLKCYECGEPGHFARECRLR GGGGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGG--GGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGG 120

Query: 121 G-----GRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREE 180
           G     GRRRSRSPRYRRSPSYGRRSYSPRGRS  PRRRS SPRGRS+SRSP PYR REE
Sbjct: 121 GGGGGAGRRRSRSPRYRRSPSYGRRSYSPRGRS--PRRRSVSPRGRSFSRSP-PYRGREE 180

Query: 181 LPYANGNGVRERRRSRS 193
           +PYANGNG+++RRRSRS
Sbjct: 181 IPYANGNGIKDRRRSRS 192

[Close]

BLAST of Spo15939.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6R6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_107020 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 1.100e-100
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120

Query: 121 GGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYAN 180
           GGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYAN
Sbjct: 121 GGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYAN 180

Query: 181 GNGVRERRRSRS 193
           GNGVRERRRSRS
Sbjct: 181 GNGVRERRRSRS 192

[Close]

BLAST of Spo15939.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E8D7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g045280 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 6.200e-96
Identity = 189/193 (97.93%), Postives = 189/193 (97.93%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGG-GRGGSDLKCYECGEPGHFARECRLRVGGGGGG 120
           KNGWRVELSHNSRGGGGGRGGG GGGG GRGGSDLKCYECGEPGHFARECRLRV GGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGGGGGGRGRGGSDLKCYECGEPGHFARECRLRV-GGGGG 120

Query: 121 GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYA 180
           GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSP PYRAREELPYA
Sbjct: 121 GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPPPYRAREELPYA 180

Query: 181 NGNGVRERRRSRS 193
           NGNGVRERRRSRS
Sbjct: 181 NGNGVRERRRSRS 192

[Close]

BLAST of Spo15939.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LEI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881900 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.500e-83
Identity = 172/197 (87.31%), Postives = 179/197 (90.86%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRV+ERELEDEFRVFGVIRSVWVARRPPGYAFIDFDD RDA+DAIH LDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGG  GG G  GGSDLKCYECGEPGHFARECRLR GGGGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGG--GGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGG 120

Query: 121 G-----GRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREE 180
           G     GRRRSRSPRYRRSPSYGRRSYSPRGRS  PRRRS SPRGRS+SRSP PYR REE
Sbjct: 121 GGGGGAGRRRSRSPRYRRSPSYGRRSYSPRGRS--PRRRSVSPRGRSFSRSP-PYRGREE 180

Query: 181 LPYANGNGVRERRRSRS 193
           +PYANGNG+++RRRSRS
Sbjct: 181 IPYANGNGIKDRRRSRS 192

[Close]

BLAST of Spo15939.1 vs. UniProtKB/TrEMBL
Match: B9N668_POPTR (Splicing factor RSZp22 family protein OS=Populus trichocarpa GN=POPTR_0006s28720g PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 3.000e-82
Identity = 171/193 (88.60%), Postives = 177/193 (91.71%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRV+ER+LEDEFR FGVIRSVWVARRPPGYAFIDFDD RDA+DAIH LDG
Sbjct: 1   MSRVYVGNLDPRVSERDLEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAQDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGR-GGSDLKCYECGEPGHFARECRLRVGGGGGG 120
           KNGWRVELSHNSRGGGGG GGGRGGG GR GGSDLKCYECGEPGHFARECRLRV   G G
Sbjct: 61  KNGWRVELSHNSRGGGGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRV---GSG 120

Query: 121 GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYA 180
           GGGRRRSRSPRYRRSPSYGRRSYSPRGRS  P+RRS SPRGRSYSRSP  YR REELPYA
Sbjct: 121 GGGRRRSRSPRYRRSPSYGRRSYSPRGRS--PKRRSLSPRGRSYSRSP-QYRGREELPYA 180

Query: 181 NGNGVRERRRSRS 193
           NGNG+R+RRRSRS
Sbjct: 181 NGNGIRDRRRSRS 187

[Close]

BLAST of Spo15939.1 vs. UniProtKB/TrEMBL
Match: D7T0J3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0069g00800 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.400e-79
Identity = 170/193 (88.08%), Postives = 172/193 (89.12%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDD RDA+DAI  LDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGR-GGSDLKCYECGEPGHFARECRLRVGGGGGG 120
           KNGWRVELSHNSRGGG   GGGRGGG GR GGSDLKCYECGEPGHFARECRLR      G
Sbjct: 61  KNGWRVELSHNSRGGG---GGGRGGGRGRSGGSDLKCYECGEPGHFARECRLR------G 120

Query: 121 GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYA 180
           G GRRRSRSPRYRRSPSYGRRSYSPRGRS  PRRRS SPRGRSYSRSP  YR REELPYA
Sbjct: 121 GSGRRRSRSPRYRRSPSYGRRSYSPRGRS--PRRRSLSPRGRSYSRSPG-YRGREELPYA 180

Query: 181 NGNGVRERRRSRS 193
           NGNG+RERRRSRS
Sbjct: 181 NGNGLRERRRSRS 181

[Close]

BLAST of Spo15939.1 vs. ExPASy Swiss-Prot
Match: RSZ22_ARATH (Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana GN=RSZ22 PE=1 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.800e-77
Identity = 165/206 (80.10%), Postives = 173/206 (83.98%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFR FGV+RSVWVARRPPGYAF+DF+D RDA+DAI ALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 61  KNGWRVELSHN-SRGGGGGRGGGRGGG----GGRGGSDLKCYECGEPGHFARECRLRVGG 120
           KNGWRVE SHN    GGGGRGG RGGG    GGRGGSDLKCYECGE GHFARECR R   
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNR--- 120

Query: 121 GGGGGGGRRRSRS-----PRYRRSPSYGRRSYSPRGRS-PPPRRRSPSP---RGRSYSRS 180
              GG GRRRS+S     PRYRRSPSYGRRSYSPR RS PPPRRRSPSP   RGRSYSRS
Sbjct: 121 ---GGTGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRS 180

Query: 181 PAPYRAREELPYANGNGVRERRRSRS 193
           P PYRAREE+PYANGNG++ERRRSRS
Sbjct: 181 PPPYRAREEVPYANGNGLKERRRSRS 200

[Close]

BLAST of Spo15939.1 vs. ExPASy Swiss-Prot
Match: RZ22A_ARATH (Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana GN=RSZ22A PE=1 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 4.100e-77
Identity = 162/202 (80.20%), Postives = 175/202 (86.63%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFR FGVIRSVWVARRPPGYAF+DF+D+RDA+DAI  +DG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGG---GRGGSDLKCYECGEPGHFARECRLRVGGGG 120
           KNGWRVE SHN RGGGGGRGGGRGGG    GRGGSDLKCYECGE GHFARECR R     
Sbjct: 61  KNGWRVEQSHN-RGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSR----- 120

Query: 121 GGGGGRRRSRS-----PRYRRSPSY-GRRSYSPRGRS-PPPRRRSPSPRGRSYSRSPAPY 180
           GG GGRRRSRS     PRYR+SP+Y GRRSYSPR RS PPPRRRSPSPRGR+YSRSP PY
Sbjct: 121 GGSGGRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPPPPRRRSPSPRGRNYSRSPPPY 180

Query: 181 RAREELPYANGNGVRERRRSRS 193
           RAR+E+PYANGNG+++ RRSRS
Sbjct: 181 RARDEVPYANGNGLKDVRRSRS 196

[Close]

BLAST of Spo15939.1 vs. ExPASy Swiss-Prot
Match: RZ21A_ORYSJ (Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica GN=RSZ21A PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.300e-59
Identity = 140/199 (70.35%), Postives = 150/199 (75.38%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           M+RVYVGNLDPRVT RELEDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDA+DAI  +DG
Sbjct: 1   MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELS N+         GRGG    G S+ KCYECGE GHFARECRLR+G GG G 
Sbjct: 61  KNGWRVELSRNA-------SSGRGGRDRYGSSESKCYECGETGHFARECRLRIGSGGLGS 120

Query: 121 GGRR-----RSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSP-RGRSYSRSPAPYRARE 180
           G RR     RSRSPRYRRSPSYGRRSYSP GRS  PRRRS SP R RSYSRSP   R R+
Sbjct: 121 GRRRSRSRSRSRSPRYRRSPSYGRRSYSPAGRS--PRRRSVSPARARSYSRSPQYNRGRD 180

Query: 181 ELP-YANGNGVRERRRSRS 193
           E P Y NG      RRSRS
Sbjct: 181 ESPAYDNG-----YRRSRS 185

[Close]

BLAST of Spo15939.1 vs. ExPASy Swiss-Prot
Match: RSZ21_ORYSJ (Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica GN=RSZP21 PE=2 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.300e-59
Identity = 136/198 (68.69%), Postives = 150/198 (75.76%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           M+R+YVGNLDPRVT  ELEDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDA+DA+  LDG
Sbjct: 1   MARLYVGNLDPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELS NS          RGG    GGS++KCYECGE GHFARECRLR+G GG G 
Sbjct: 61  KNGWRVELSRNS--------SSRGGRDRHGGSEMKCYECGETGHFARECRLRIGPGGLGS 120

Query: 121 GGRR-----RSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSP-RGRSYSRSPAPYRARE 180
           G RR     RSRSP+YR+SP+YGRRSYSPR RS  PRRRS SP RGRSYSRSP   R R 
Sbjct: 121 GKRRSRSRSRSRSPQYRKSPTYGRRSYSPRDRS--PRRRSVSPVRGRSYSRSP---RGRG 180

Query: 181 ELPYANGNGVRERRRSRS 193
             PYA+G      RRSRS
Sbjct: 181 GSPYADGRDGGRYRRSRS 185

[Close]

BLAST of Spo15939.1 vs. ExPASy Swiss-Prot
Match: RZP23_ORYSJ (Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp. japonica GN=RSZ23 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.100e-57
Identity = 136/206 (66.02%), Postives = 146/206 (70.87%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           M+RVYVGNLDPRVT RE+EDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDA+DAI  LDG
Sbjct: 1   MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELS  +   G GRG  R      GGSD+KCYECGEPGHFARECRLR+G GG G 
Sbjct: 61  KNGWRVELSTKA---GSGRGRDRS-----GGSDMKCYECGEPGHFARECRLRIGSGGLGS 120

Query: 121 G--------------GRRRSRSPRYRRSPSYGR--RSYSPRGRS-----PPPRRRS---- 180
           G              GR RSRSPRYRRSPSYGR  R  SP+ RS     PP R RS    
Sbjct: 121 GRRRSRSRSRSPRYRGRSRSRSPRYRRSPSYGRSPRDRSPKRRSYSRSPPPARARSYSRS 180

[Close]

BLAST of Spo15939.1 vs. TAIR (Arabidopsis)
Match: AT4G31580.1 (serine/arginine-rich 22)

HSP 1 Score: 290.0 bits (741), Expect = 1.000e-78
Identity = 165/206 (80.10%), Postives = 173/206 (83.98%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFR FGV+RSVWVARRPPGYAF+DF+D RDA+DAI ALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 61  KNGWRVELSHN-SRGGGGGRGGGRGGG----GGRGGSDLKCYECGEPGHFARECRLRVGG 120
           KNGWRVE SHN    GGGGRGG RGGG    GGRGGSDLKCYECGE GHFARECR R   
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNR--- 120

Query: 121 GGGGGGGRRRSRS-----PRYRRSPSYGRRSYSPRGRS-PPPRRRSPSP---RGRSYSRS 180
              GG GRRRS+S     PRYRRSPSYGRRSYSPR RS PPPRRRSPSP   RGRSYSRS
Sbjct: 121 ---GGTGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRS 180

Query: 181 PAPYRAREELPYANGNGVRERRRSRS 193
           P PYRAREE+PYANGNG++ERRRSRS
Sbjct: 181 PPPYRAREEVPYANGNGLKERRRSRS 200

[Close]

BLAST of Spo15939.1 vs. TAIR (Arabidopsis)
Match: AT2G24590.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein)

HSP 1 Score: 288.9 bits (738), Expect = 2.300e-78
Identity = 162/202 (80.20%), Postives = 175/202 (86.63%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFR FGVIRSVWVARRPPGYAF+DF+D+RDA+DAI  +DG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGG---GRGGSDLKCYECGEPGHFARECRLRVGGGG 120
           KNGWRVE SHN RGGGGGRGGGRGGG    GRGGSDLKCYECGE GHFARECR R     
Sbjct: 61  KNGWRVEQSHN-RGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSR----- 120

Query: 121 GGGGGRRRSRS-----PRYRRSPSY-GRRSYSPRGRS-PPPRRRSPSPRGRSYSRSPAPY 180
           GG GGRRRSRS     PRYR+SP+Y GRRSYSPR RS PPPRRRSPSPRGR+YSRSP PY
Sbjct: 121 GGSGGRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPPPPRRRSPSPRGRNYSRSPPPY 180

Query: 181 RAREELPYANGNGVRERRRSRS 193
           RAR+E+PYANGNG+++ RRSRS
Sbjct: 181 RARDEVPYANGNGLKDVRRSRS 196

[Close]

BLAST of Spo15939.1 vs. TAIR (Arabidopsis)
Match: AT1G23860.1 (RS-containing zinc finger protein 21)

HSP 1 Score: 213.0 bits (541), Expect = 1.600e-55
Identity = 131/198 (66.16%), Postives = 139/198 (70.20%), Query Frame = 1


		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           M+RVYVGNLDPRVTERELEDEF+ FGV+R+VWVARRPPGYAF++FDD RDA DAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELSH  +GG GG GG RGG       D KCYECGE GHFARECR       G G
Sbjct: 61  KNGWRVELSHKDKGGRGGGGGRRGGI-----EDSKCYECGELGHFARECRR------GRG 120

Query: 121 GGRRRSRSPRYRRSPSYG--RRSYSPRGRSPPPRRRSPSP--RGRSYSRSPAPYRAR--- 180
             RRRS SPR RRSP YG  RRS SPRGR  PPRRRS +P  RGRSYSRSP PYR     
Sbjct: 121 SVRRRSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSP-PYRGSRRD 180

Query: 181 ----------EELPYANG 182
                        PYANG
Sbjct: 181 SPRRRDSPYGRRSPYANG 186

[Close]

BLAST of Spo15939.1 vs. TAIR (Arabidopsis)
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 75.5 bits (184), Expect = 4.000e-14
Identity = 52/106 (49.06%), Postives = 62/106 (58.49%), Query Frame = 1


		  
Query: 4   VYVGNLDPRVTERELEDEFRVFGVIRSV--WVARRPPGYAFIDFDDTRDAKDAIHALDG- 63
           VYVGNL   + ERE+ED F  +G +  +   V  RPPGYAF++FDD RDA+DAIH  DG 
Sbjct: 9   VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68

Query: 64  ---KNGWRVELSHNSR-----------GGGGGRGGGRGGGGGRGGS 93
               +  RVEL+H  R           GGG G G GRG GG RG S
Sbjct: 69  DFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPS 114

[Close]

BLAST of Spo15939.1 vs. TAIR (Arabidopsis)
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.900e-12
Identity = 50/107 (46.73%), Postives = 64/107 (59.81%), Query Frame = 1


		  
Query: 4   VYVGNLDPRVTERELEDEFRVFGVIRSV--WVARRPPGYAFIDFDDTRDAKDAIHALDG- 63
           +YVGNL   + ERE+ED F  +G +  +   +  RPPGYAF++F+D RDA DAI+  DG 
Sbjct: 9   IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68

Query: 64  ---KNGWRVEL-------SHNSRG-----GGGGRGGGRGGGGGRGGS 93
               +  RVEL       SH++RG     G GGRGGG GGG  RG S
Sbjct: 69  DFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPS 115

The following BLAST results are available for this feature:

BLAST of Spo15939.1 vs. NCBI nr
BLAST of Spo15939.1 vs. UniProtKB/TrEMBL
BLAST of Spo15939.1 vs. ExPASy Swiss-Prot
BLAST of Spo15939.1 vs. TAIR (Arabidopsis)

BLAST of Spo15939.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902203233\|gb\|KNA14497.1\|	1.6e-100	100.	hypothetical protein SOVF_1070...	[more]
gi\|731362650\|ref\|XP_010692998.1\|	8.8e-96	97.9	PREDICTED: serine/arginine-ric...	[more]
gi\|743862403\|ref\|XP_011031384.1\|	3.8e-83	89.6	PREDICTED: serine/arginine-ric...	[more]
gi\|659132619\|ref\|XP_008466294.1\|	3.8e-83	89.5	PREDICTED: serine/arginine-ric...	[more]
gi\|449437054\|ref\|XP_004136307.1\|	5.0e-83	87.3	PREDICTED: serine/arginine-ric...	[more]

BLAST of Spo15939.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R6R6_SPIOL	1.1e-100	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8E8D7_BETVU	6.2e-96	97.9	Uncharacterized protein OS=Bet...	[more]
A0A0A0LEI3_CUCSA	3.5e-83	87.3	Uncharacterized protein OS=Cuc...	[more]
B9N668_POPTR	3.0e-82	88.6	Splicing factor RSZp22 family ...	[more]
D7T0J3_VITVI	1.4e-79	88.0	Putative uncharacterized prote...	[more]

BLAST of Spo15939.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RSZ22_ARATH	1.8e-77	80.1	Serine/arginine-rich splicing ...	[more]
RZ22A_ARATH	4.1e-77	80.2	Serine/arginine-rich splicing ...	[more]
RZ21A_ORYSJ	1.3e-59	70.3	Serine/arginine-rich splicing ...	[more]
RSZ21_ORYSJ	2.3e-59	68.6	Serine/arginine-rich splicing ...	[more]
RZP23_ORYSJ	2.1e-57	66.0	Serine/arginine-rich splicing ...	[more]

BLAST of Spo15939.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT4G31580.1	1.0e-78	80.1	serine/arginine-rich 22	[more]
AT2G24590.1	2.3e-78	80.2	RNA recognition motif and CCHC...	[more]
AT1G23860.1	1.6e-55	66.1	RS-containing zinc finger prot...	[more]
AT1G02840.1	4.0e-14	49.0	RNA-binding (RRM/RBD/RNP motif...	[more]
AT4G02430.2	2.9e-12	46.7	RNA-binding (RRM/RBD/RNP motif...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 4..61 score: 2.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 3..69 score: 9.6
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 2..73 score: 16
IPR001878	Zinc finger, CCHC-type	GENE3D	4.10.60.10		coord: 93..111 score: 7.
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 95..110 score: 6.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 95..111 score: 7.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 95..110 score: 10
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 77..115 score: 6.6
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 2..78 score: 2.3
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 3..89 score: 8.06
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 136..192 score: 2.0E-14coord: 2..84 score: 2.0
None	No IPR available	PANTHER	PTHR23147:SF1	SUBFAMILY NOT NAMED	coord: 2..84 score: 2.0E-14coord: 136..192 score: 2.0

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008270	zinc ion binding