Spo16455.1 (mRNA) | SpinachBase

Overview


Name	Spo16455.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	ASR2
Location	chr2 : 39593644 .. 39594365 (+)
Sequence length	590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAATTATATTACAGCGATCAAGTATATTTGTGGATCGATCTCAAATACAATTTCAATTTCAATTTCGTAAGTTTGTTTGGAAATAATGTCTGACGGCGAGGAAAAGAAGCACCACCACATCTTCCACCGTCACAAGGAGGAAGAGAAGCCAAAGAGCCCCGAAGAGGAGTTGAAGCATCACAAGGTCCTTAGCCACATTAGCAAGGCTACCGCTGTTGCTGCTGGTGCATATGCCTTGGTACGTACAGACATTATAATCTAACAAGATCCAACATAACTATATACTTTTATTTTTATTTTTTATAATGTTATATTATGGTGATTATTAATATTAATATACTACGTGTCGCGTCGTGTTGTATACGTATAGCACGAGAAGCATCAGTCGAAGAAGGACCCAGAGAATGCAAGCCGGCACAAGAAAGGAGAGGCAATCGCGGCCACGGTTGCAGTGGGAGCTGGTGGACTTGCATTCCATGAGCATCACAAGAAGAAGGAAGCTAAAGAAAGACTCAAAGAGGAGAGTAGCCATCATTAAACTATAATTAACCCGTATATATCATATGTGCATGCATGTTTCATCTGAGTTCTAATAATAATTAAGTCCGTAATTTCACTTTGTTATCTCACTTACATTTGTTTTTTATGTTAAGGATTCATCAATATTTATATTCTTATCGTTGTATTTGTACCGAAGAAATATTTATGATACAAATGTTCC

mRNA sequence

TCAATTATATTACAGCGATCAAGTATATTTGTGGATCGATCTCAAATACAATTTCAATTTCAATTTCGTAAGTTTGTTTGGAAATAATGTCTGACGGCGAGGAAAAGAAGCACCACCACATCTTCCACCGTCACAAGGAGGAAGAGAAGCCAAAGAGCCCCGAAGAGGAGTTGAAGCATCACAAGGTCCTTAGCCACATTAGCAAGGCTACCGCTGTTGCTGCTGGTGCATATGCCTTGCACGAGAAGCATCAGTCGAAGAAGGACCCAGAGAATGCAAGCCGGCACAAGAAAGGAGAGGCAATCGCGGCCACGGTTGCAGTGGGAGCTGGTGGACTTGCATTCCATGAGCATCACAAGAAGAAGGAAGCTAAAGAAAGACTCAAAGAGGAGAGTAGCCATCATTAAACTATAATTAACCCGTATATATCATATGTGCATGCATGTTTCATCTGAGTTCTAATAATAATTAAGTCCGTAATTTCACTTTGTTATCTCACTTACATTTGTTTTTTATGTTAAGGATTCATCAATATTTATATTCTTATCGTTGTATTTGTACCGAAGAAATATTTATGATACAAATGTTCC

Coding sequence (CDS)

ATGTCTGACGGCGAGGAAAAGAAGCACCACCACATCTTCCACCGTCACAAGGAGGAAGAGAAGCCAAAGAGCCCCGAAGAGGAGTTGAAGCATCACAAGGTCCTTAGCCACATTAGCAAGGCTACCGCTGTTGCTGCTGGTGCATATGCCTTGCACGAGAAGCATCAGTCGAAGAAGGACCCAGAGAATGCAAGCCGGCACAAGAAAGGAGAGGCAATCGCGGCCACGGTTGCAGTGGGAGCTGGTGGACTTGCATTCCATGAGCATCACAAGAAGAAGGAAGCTAAAGAAAGACTCAAAGAGGAGAGTAGCCATCATTAA

Protein sequence

MSDGEEKKHHHIFHRHKEEEKPKSPEEELKHHKVLSHISKATAVAAGAYALHEKHQSKKDPENASRHKKGEAIAATVAVGAGGLAFHEHHKKKEAKERLKEESSHH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo16455	Spo16455	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo16455.1	Spo16455.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16455.1.exon.1	Spo16455.1.exon.1	exon
Spo16455.1.exon.2	Spo16455.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16455.1.utr5p.1	Spo16455.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16455.1.CDS.1	Spo16455.1.CDS.1	CDS
Spo16455.1.CDS.2	Spo16455.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16455.1.utr3p.1	Spo16455.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo16455.1 vs. NCBI nr
Match: gi|902197544|gb|KNA13463.1| (hypothetical protein SOVF_116530 [Spinacia oleracea])

HSP 1 Score: 204.9 bits (520), Expect = 6.900e-50
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


		  
Query: 1   MSDGEEKKHHHIFHRHKEEEKPKSPEEELKHHKVLSHISKATAVAAGAYALHEKHQSKKD 60
           MSDGEEKKHHHIFHRHKEEEKPKSPEEELKHHKVLSHISKATAVAAGAYALHEKHQSKKD
Sbjct: 1   MSDGEEKKHHHIFHRHKEEEKPKSPEEELKHHKVLSHISKATAVAAGAYALHEKHQSKKD 60

Query: 61  PENASRHKKGEAIAATVAVGAGGLAFHEHHKKKEAKERLKEESSHH 107
           PENASRHKKGEAIAATVAVGAGGLAFHEHHKKKEAKERLKEESSHH
Sbjct: 61  PENASRHKKGEAIAATVAVGAGGLAFHEHHKKKEAKERLKEESSHH 106

[Close]

BLAST of Spo16455.1 vs. NCBI nr
Match: gi|731312247|ref|XP_010673239.1| (PREDICTED: abscisic stress-ripening protein 1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 146.0 bits (367), Expect = 3.800e-32
Identity = 79/106 (74.53%), Postives = 90/106 (84.91%), Query Frame = 1


		  
Query: 1   MSDGEEKKHHHIFHRHKEEEK----PKSPEEELKHHKVLSHISKATAVAAGAYALHEKHQ 60
           MSDGEE  H  +FHRHKEEEK    P++ EEELKHHK L HISKATA+AAGAYALHEKH+
Sbjct: 1   MSDGEEH-HRGLFHRHKEEEKEEKEPRTAEEELKHHKNLGHISKATALAAGAYALHEKHK 60

Query: 61  SKKDPENASRHKKGEAIAATVAVGAGGLAFHEHHKKKEAKERLKEE 103
           +KKDPENA +HK  E IAAT+AVGAGG AFHEHHKKKEAKER+++E
Sbjct: 61  AKKDPENAHKHKTAEEIAATLAVGAGGFAFHEHHKKKEAKERIEDE 105

[Close]

BLAST of Spo16455.1 vs. NCBI nr
Match: gi|731312245|ref|XP_010673227.1| (PREDICTED: abscisic stress-ripening protein 1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 141.4 bits (355), Expect = 9.400e-31
Identity = 75/107 (70.09%), Postives = 90/107 (84.11%), Query Frame = 1


		  
Query: 1   MSDGEEKKHHHIFHRHKEEEK-----PKSPEEELKHHKVLSHISKATAVAAGAYALHEKH 60
           MSDGEE  H  +FHRHK+EE+     P++ EEELKHHK L HISKATA+AAGAYALHE+H
Sbjct: 1   MSDGEEH-HRGLFHRHKDEEEKEEKEPRTAEEELKHHKNLGHISKATALAAGAYALHERH 60

Query: 61  QSKKDPENASRHKKGEAIAATVAVGAGGLAFHEHHKKKEAKERLKEE 103
           ++KKDPENA +HK  + IAATVA+GAGG AFHEHHKKKEAKER+++E
Sbjct: 61  KAKKDPENADKHKTAQGIAATVALGAGGFAFHEHHKKKEAKERIEDE 106

[Close]

BLAST of Spo16455.1 vs. NCBI nr
Match: gi|269852812|gb|ACZ50733.1| (abscisic stress ripening [Musa banksii])

HSP 1 Score: 124.0 bits (310), Expect = 1.500e-25
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 1


		  
Query: 1   MSDGEEKKHHHIFHRHKEEEKPKS--PEEELKHHKVLSHISKATAVAAGAYALHEKHQSK 60
           M++ E+K HHH FHRH++EE P    P++E KHHK   H+ +  A+AAGAYALHEKHQ+K
Sbjct: 1   MAEEEQKHHHHFFHRHRDEESPSEVDPKKEEKHHKHKEHLGELGALAAGAYALHEKHQAK 60

Query: 61  KDPENASRHKKGEAIAATVAVGAGGLAFHEHHKKKEAKERLKE 102
           KDPENA +HK  E IAATVAVG+ G AFHEHH+KKEAK+   E
Sbjct: 61  KDPENAHKHKVAEEIAATVAVGSAGFAFHEHHEKKEAKKHACE 103

[Close]

BLAST of Spo16455.1 vs. NCBI nr
Match: gi|731313577|ref|XP_010680922.1| (PREDICTED: abscisic stress-ripening protein 3-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 123.6 bits (309), Expect = 2.000e-25
Identity = 62/93 (66.67%), Postives = 72/93 (77.42%), Query Frame = 1


		  
Query: 14  HRHKEEEKPKSPEEELKHHKVLSHISKATAVAAGAYALHEKHQSKKDPENASRHKKGEAI 73
           H H++EE  K P++ELKHHK L H  KAT VAAG YALHEK Q+KKDPENA +HK  E +
Sbjct: 4   HHHRKEEAKKDPKKELKHHKHLQHFGKATVVAAGTYALHEKKQAKKDPENAHKHKVKEGV 63

Query: 74  AATVAVGAGGLAFHEHHKKKEAKERLKEESSHH 107
           AA VAVGA GL FHEHHKKKEAK+ LK++  HH
Sbjct: 64  AAAVAVGAAGLVFHEHHKKKEAKQELKQQKKHH 96

[Close]

BLAST of Spo16455.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R1S4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_116530 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 4.800e-50
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


		  
Query: 1   MSDGEEKKHHHIFHRHKEEEKPKSPEEELKHHKVLSHISKATAVAAGAYALHEKHQSKKD 60
           MSDGEEKKHHHIFHRHKEEEKPKSPEEELKHHKVLSHISKATAVAAGAYALHEKHQSKKD
Sbjct: 1   MSDGEEKKHHHIFHRHKEEEKPKSPEEELKHHKVLSHISKATAVAAGAYALHEKHQSKKD 60

Query: 61  PENASRHKKGEAIAATVAVGAGGLAFHEHHKKKEAKERLKEESSHH 107
           PENASRHKKGEAIAATVAVGAGGLAFHEHHKKKEAKERLKEESSHH
Sbjct: 61  PENASRHKKGEAIAATVAVGAGGLAFHEHHKKKEAKERLKEESSHH 106

[Close]

BLAST of Spo16455.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D8Q9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g007160 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.700e-32
Identity = 79/106 (74.53%), Postives = 90/106 (84.91%), Query Frame = 1


		  
Query: 1   MSDGEEKKHHHIFHRHKEEEK----PKSPEEELKHHKVLSHISKATAVAAGAYALHEKHQ 60
           MSDGEE  H  +FHRHKEEEK    P++ EEELKHHK L HISKATA+AAGAYALHEKH+
Sbjct: 1   MSDGEEH-HRGLFHRHKEEEKEEKEPRTAEEELKHHKNLGHISKATALAAGAYALHEKHK 60

Query: 61  SKKDPENASRHKKGEAIAATVAVGAGGLAFHEHHKKKEAKERLKEE 103
           +KKDPENA +HK  E IAAT+AVGAGG AFHEHHKKKEAKER+++E
Sbjct: 61  AKKDPENAHKHKTAEEIAATLAVGAGGFAFHEHHKKKEAKERIEDE 105

[Close]

BLAST of Spo16455.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D8Z6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g007150 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 6.500e-31
Identity = 75/107 (70.09%), Postives = 90/107 (84.11%), Query Frame = 1


		  
Query: 1   MSDGEEKKHHHIFHRHKEEEK-----PKSPEEELKHHKVLSHISKATAVAAGAYALHEKH 60
           MSDGEE  H  +FHRHK+EE+     P++ EEELKHHK L HISKATA+AAGAYALHE+H
Sbjct: 1   MSDGEEH-HRGLFHRHKDEEEKEEKEPRTAEEELKHHKNLGHISKATALAAGAYALHERH 60

Query: 61  QSKKDPENASRHKKGEAIAATVAVGAGGLAFHEHHKKKEAKERLKEE 103
           ++KKDPENA +HK  + IAATVA+GAGG AFHEHHKKKEAKER+++E
Sbjct: 61  KAKKDPENADKHKTAQGIAATVALGAGGFAFHEHHKKKEAKERIEDE 106

[Close]

BLAST of Spo16455.1 vs. UniProtKB/TrEMBL
Match: D1ME81_MUSBN (Abscisic stress ripening OS=Musa banksii GN=ASR4 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.100e-25
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 1


		  
Query: 1   MSDGEEKKHHHIFHRHKEEEKPKS--PEEELKHHKVLSHISKATAVAAGAYALHEKHQSK 60
           M++ E+K HHH FHRH++EE P    P++E KHHK   H+ +  A+AAGAYALHEKHQ+K
Sbjct: 1   MAEEEQKHHHHFFHRHRDEESPSEVDPKKEEKHHKHKEHLGELGALAAGAYALHEKHQAK 60

Query: 61  KDPENASRHKKGEAIAATVAVGAGGLAFHEHHKKKEAKERLKE 102
           KDPENA +HK  E IAATVAVG+ G AFHEHH+KKEAK+   E
Sbjct: 61  KDPENAHKHKVAEEIAATVAVGSAGFAFHEHHEKKEAKKHACE 103

[Close]

BLAST of Spo16455.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D0C2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g011790 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.400e-25
Identity = 62/93 (66.67%), Postives = 72/93 (77.42%), Query Frame = 1


		  
Query: 14  HRHKEEEKPKSPEEELKHHKVLSHISKATAVAAGAYALHEKHQSKKDPENASRHKKGEAI 73
           H H++EE  K P++ELKHHK L H  KAT VAAG YALHEK Q+KKDPENA +HK  E +
Sbjct: 4   HHHRKEEAKKDPKKELKHHKHLQHFGKATVVAAGTYALHEKKQAKKDPENAHKHKVKEGV 63

Query: 74  AATVAVGAGGLAFHEHHKKKEAKERLKEESSHH 107
           AA VAVGA GL FHEHHKKKEAK+ LK++  HH
Sbjct: 64  AAAVAVGAAGLVFHEHHKKKEAKQELKQQKKHH 96

[Close]

BLAST of Spo16455.1 vs. ExPASy Swiss-Prot
Match: ASR1_SOLLC (Abscisic stress-ripening protein 1 OS=Solanum lycopersicum GN=ASR1 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.400e-23
Identity = 61/101 (60.40%), Postives = 74/101 (73.27%), Query Frame = 1


		  
Query: 5   EEKKHHH---IFHRHKEEEKPKSPEEELKHHKVLSHISKATAVAAGAYALHEKHQSKKDP 64
           EE+KHHH     H+ K EE P   E+E+KHHK L  I K   VAAGAYALHEKH++KKDP
Sbjct: 2   EEEKHHHHHLFHHKDKAEEGPVDYEKEIKHHKHLEQIGKLGTVAAGAYALHEKHEAKKDP 61

Query: 65  ENASRHKKGEAIAATVAVGAGGLAFHEHHKKKEAKERLKEE 103
           E+A +HK  E IAA  AVGAGG AFHEHH+KK+AK+  K++
Sbjct: 62  EHAHKHKIEEEIAAAAAVGAGGFAFHEHHEKKDAKKEEKKK 102

[Close]

BLAST of Spo16455.1 vs. ExPASy Swiss-Prot
Match: ASR3_SOLLC (Abscisic stress-ripening protein 3 OS=Solanum lycopersicum GN=ASR3 PE=4 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 1.200e-22
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = 1


		  
Query: 5   EEKKHHHIFHRHKEEEK--PKSPEEELKHHKVLSHISKATAVAAGAYALHEKHQSKKDPE 64
           EEK+HH +FH    EE+  P   ++++KHH  L  I +  AVAAGAYALHEKH++KKDPE
Sbjct: 3   EEKQHHRLFHHKNREEEGGPVDHKKKVKHHSHLQKIGELGAVAAGAYALHEKHKAKKDPE 62

Query: 65  NASRHKKGEAIAATVAVGAGGLAFHEHHKKKEAKERLK--EESSHH 107
           NA +HK  + IAA  AVGAGG AFHEHH+KKEAK+  K  E+  HH
Sbjct: 63  NAHKHKIKQEIAAVAAVGAGGFAFHEHHQKKEAKKEKKAAEKGRHH 108

[Close]

BLAST of Spo16455.1 vs. ExPASy Swiss-Prot
Match: ASR2_SOLLC (Abscisic stress-ripening protein 2 OS=Solanum lycopersicum GN=ASR2 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.900e-22
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 1


		  
Query: 1   MSDGEEKKHHHIFHRHKEEEK--PKSPEEELKHHKVLSHISKATAVAAGAYALHEKHQSK 60
           M++ + + HHH+FH   +E++  P   E+E+KHH  L  I +  AVAAGA ALHEKH++K
Sbjct: 1   MAEEKHQHHHHLFHHKNKEDEGGPVDYEKEVKHHSHLEKIGELGAVAAGALALHEKHKAK 60

Query: 61  KDPENASRHKKGEAIAATVAVGAGGLAFHEHHKKKEAKERLKE-ESSHH 107
           KDPE+A +HK  E I A  AVGAGG AFHEHH+KK+AK+  KE E  HH
Sbjct: 61  KDPEHAHKHKIEEEIMAVAAVGAGGFAFHEHHQKKDAKKEKKEVEGGHH 109

The following BLAST results are available for this feature:

BLAST of Spo16455.1 vs. NCBI nr
BLAST of Spo16455.1 vs. UniProtKB/TrEMBL
BLAST of Spo16455.1 vs. ExPASy Swiss-Prot
BLAST of Spo16455.1 vs. TAIR (Arabidopsis)

BLAST of Spo16455.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902197544\|gb\|KNA13463.1\|	6.9e-50	100.	hypothetical protein SOVF_1165...	[more]
gi\|731312247\|ref\|XP_010673239.1\|	3.8e-32	74.5	PREDICTED: abscisic stress-rip...	[more]
gi\|731312245\|ref\|XP_010673227.1\|	9.4e-31	70.0	PREDICTED: abscisic stress-rip...	[more]
gi\|269852812\|gb\|ACZ50733.1\|	1.5e-25	62.1	abscisic stress ripening [Musa...	[more]
gi\|731313577\|ref\|XP_010680922.1\|	2.0e-25	66.6	PREDICTED: abscisic stress-rip...	[more]

BLAST of Spo16455.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R1S4_SPIOL	4.8e-50	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8D8Q9_BETVU	2.7e-32	74.5	Uncharacterized protein OS=Bet...	[more]
A0A0J8D8Z6_BETVU	6.5e-31	70.0	Uncharacterized protein OS=Bet...	[more]
D1ME81_MUSBN	1.1e-25	62.1	Abscisic stress ripening OS=Mu...	[more]
A0A0J8D0C2_BETVU	1.4e-25	66.6	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo16455.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3


Match Name	E-value	Identity	Description
ASR1_SOLLC	1.4e-23	60.4	Abscisic stress-ripening prote...	[more]
ASR3_SOLLC	1.2e-22	57.5	Abscisic stress-ripening prote...	[more]
ASR2_SOLLC	7.9e-22	54.1	Abscisic stress-ripening prote...	[more]

BLAST of Spo16455.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003496	ABA/WDS induced protein	PFAM	PF02496	ABA_WDS	coord: 26..99 score: 8.9
None	No IPR available	PANTHER	PTHR33801	FAMILY NOT NAMED	coord: 1..106 score: 1.6

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress