Spo16629.1 (mRNA) | SpinachBase

Overview


Name	Spo16629.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RNA-binding protein 38
Location	SpoScf_00957 : 102595 .. 106579 (-)
Sequence length	1516

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCGCATTAGAGTGGGAAAAAACATCCAAGATTGGAGAGAGATGAGTTCACGTTGCTAAGAAGCTAAGAGACAAGTATAGCACTACAATTCCTAATCACCATATTCTTACCTGTCATTACCTGTCTCAATTCAAAATTCCCATACTGTCCTTCTTCCCCTTATATTTCCCGGGCCCCCTTGTCTTAATTTCACTCCTCTATTATTCCTTCTTCTCTAAAAAGTAAAAACTCAGCTTCCATTACCATATATACTACTAGTCTACTACACTTGATAAATCTTATCTATCTAATTCTAAGATGACAATGAGCGACTACAACAACAACGACAATAGTAATACTAAATCGCAATTCGGCGACACAACACTTACGAAAGTTTTCGTAGGAGGGTTAGCATGGGAGACGCCTAAGCAATCATTGTACGAACATTTTGAGAAGTACGGTGAGATCTTGGAGGCGGTTATCATTTCCGATAAGATCACCGGTCGATCCAAGGGTTATGGCTTTGTAAGTTATTGTTATCGTTATCGTTATCGATCTTTGCTTTCGACACTAGAATAATCATTTACATATAACAAATAATAATATTAATATTAATATTAATATTAATTAATTAATTAAAACGTACAGGTGACTTTTAAGGAGGCAGAGGCAGCAAAGAAGGCATGTGAAGATGCAACACCAATTATCAACGGCAGACGTGCTAACTGCAACCTAGCTGCACTAGGGGCTCGCCGTCCACCTCGAGCATCTTCCACCACTCCGCAACCCTATCAACGGCAAGTGTCAAACAATAGCAACACCAATGTTGGTGGTACCACCACGGCTGCTGCACCTACTGCTGCAGGTCATGTGCAGTGGTACTATCCTGCTGCTGCTGGTCGTGCTAGTTCGCCTACTACAACGACACCGTTTCATCCCCATCAAGCTGTTCCTTTCTATGGGTATAATTTAATTAATTGTAACAATTGTGAATTGGAAATTTATAATCTAATGTACATTGTTATTTTGAAATTATTTCAGGTACTCTCCAACCTATATTGCAGCTGATGTTGGCTACAATCATGTAAGTAAATATTCCCTACTTCATACTACTTCAATTCAACTATAATTACTACGTACATTGTCATGTGTTGCAAATTTATGTTTGACTTGGTTGTTGAAACTATAATTGAAATAGTGAAATCTTCAACTGTTTTATGTTTTGTGATCGCAAACATTTTAAACTTAGCGTGCACAAATCATTATGTGTTCATTATATGCCAGAGTGTACTTTATATTACATATCCGCGTTCATTATTTTGCTCTTTGGCTAATAAGGTGATCTCTCAAATTCAAATGGACTTAAAAATAACATTGGGTGTGTAATTCTCCTAGACGGATCCATATACTAAATTGTGAAGCGTAACCAAACAAATCGTACGCCATAATACCAAGCATTATTTTCCAAAAAGTGGCAATAAAATGGTTAATTTTTAGTCCGTACTAAAATTTCACCTAATGACTTCATCTGTGAGACCAGCAACTCTTTTTGATGCAAAGTTGCAAACTAATATGAGTCCAACGATGACAACAGTTTCAATTGTATCTTTGCATAAGATTTCATATGACCAATGATCATATACACACATTAAATTTGCACGAAAACAAATTGGTGGTCCCCTCTAATTAACCATAAGCATCTCATTTTTCTTCTCATGATTTTCGCTCTTTATTTTCAATACTAGGCACTTTCATTTGTAATATGGAACCATATAAAAAGACACTTCTTCCATTTCGTATATTTATCAGATCAATCATCTATCTATTCTTCTTATAAAATGTATCTCTTTGAGCTTAAAAACCCAATGCGATATGTGTTGCTCTAAATTTATTTCAATATACATTGAATTTTATTTTACTTTTTGATAAGTAAAAAAATTGGTATTCACACTAAAAATCAATTTCAATATACATTGTATTATTATTTGTCAATTTCAGATACTTTGCCTAAAATAATGTGCACAACAAATTAACGAAATAACTTTTTATTCCAAATGCTAAAAGTTATCATATCTCAAAAATTTTCACCGTACAATTAAATATACTTTCTAAGTATAACTGACTGTACAATTAAGATCGAAAAATCTTCTCCCTCGGTCCCTCCCTAGTCCCTACCCTTTCCTTCTTTTGAGTTTTCTTTTTTCTCCTTTCGTAATTAGGACCGTTATATTGTTGACTGAATGGTCAAACTAATATGTTACTGTAATTGCAGAAGTTAAGCTACAGTGGTGGGGCCTACATAAACGGTGGGCAGCATTACACACAGATGTATCCAGGTCAGGCTATGATGGCGGGAGCAAACACATTGATGCCATATTACCCATTTTACCCTTACTCTCACCATCACCACCACCAACATCAACACCAATCCCATCACCAGGCTGCTGCTATGGGCCTACCAGCCCACATTTTCCCACCTTCTTCTGCTGGCCCAATTACTGTTTCTCCTCCCATTATCTCTAAGCCCATTACTCCCATTTGCGTAACCCCTCCCTCAGGTATACTTTCTTTATAAATTAGACATTTAATCACTTTATACATGCCAAATTCGTATATAAGCAAGTTTGATGGATTTTATTTCGTTAAAATACGTATTAGTTAAACAAAAAAAATCAACGAAAAAGTCATAAAATCACTTAAAAGTCTATGAGTTTGAAAATTTTGTTTAGTTAGACAGTCTCATAAGGGATCAACTCTGCATTTCTCCACCTTATGCAAGATAGTTAATGTATCATTTTTGTCCTTTAATCCAAAAATTAGATCACGAATAATAAATTCATAAAAAAATCATAACCTCAATTCTAAATTATGCCTCATGTAGTGGTCTAGTTGGCATCAATCATGCCCTTCCTTCGGCCTCGGCTGTCTTTAGAGACATGGTCGCACGTATTTTTGCTGGCATTACATGTGTGCAACTATCAATGACAATCTATGTCTTCACTACAAAGTACCACTACTATGATAATGACATTAACAGCTTTAAAATAAAATTGCTATCTTACTTGAGATCATTTACAAGCCGATTTTAATATCCTGCTAGAGATGGACTTACAATAACTCTAACATTGATATTTACAAATTTGTTCAGTCTTGTACGAAGTATAAGATAGGTACATGTTAGAATTTTGATTCAGTTTTCTATTTATGAATTACGACTTTGATGTTCAAATATTTCATTTAACTTTAGATGTTCATTTGTATTATGTAGTAATGTAGGGCACTCTGCACTTTATTTTAGATCAAAAATTAAATTTTAGGTTGACATCAGTGACAAACCTTTACTATGGTTGTGGTGGGCCTAGTCCCTGGCGAAAACTTTTGTAGTCTAATTTTAGTCCCGACCCTTCAACTTTGAGCATAATTAATTGTGAGTATCTCATACTACACGAGGAGTATATTGCCTTTTTTTTATATACTGCCTCCATCATTGTTCAAGAACTGTTACTGGTCGTCATAATAATTGTATACCCGTATTAGTATTATTATTATTATGCTTAAATGAGACTTAGGAGATTGAATTTATTTTATTAACTAATTTAGGTAAGAACTATAAACTGATATATACCATGGGATTCAGTGTGCTTGACAGTGGAGTAGGTTCAATTGGAGCAAGGGAGAGCTTAAAGAAAGGAAGAATCATTCAATAATTGCAAGCAAAAGAAGAATGCATGGAAGATTGTGTCTTTGGCTCAGAATCACATTATTATCATCTCATCAAGAATGGCTCATCTTTCCAACCAAAACAAGATAAAAGGGCCCCAAAAAAACCCTAATTTTTTAATCCAATTTTTTTAATTATTAATTGATTTTCTTAGGTATTGGATAATTAATTAATTACAATTAATATATTCATTTATTCTACTCCCTCTAGTTTTCTTCTCTAACCCACATGATCATGGAAATCATGTTGTGTAATAATATCATAGTACTTATGTAATCTCCCCT

mRNA sequence

CGCCGCATTAGAGTGGGAAAAAACATCCAAGATTGGAGAGAGATGAGTTCACGTTGCTAAGAAGCTAAGAGACAAGTATAGCACTACAATTCCTAATCACCATATTCTTACCTGTCATTACCTGTCTCAATTCAAAATTCCCATACTGTCCTTCTTCCCCTTATATTTCCCGGGCCCCCTTGTCTTAATTTCACTCCTCTATTATTCCTTCTTCTCTAAAAAGTAAAAACTCAGCTTCCATTACCATATATACTACTAGTCTACTACACTTGATAAATCTTATCTATCTAATTCTAAGATGACAATGAGCGACTACAACAACAACGACAATAGTAATACTAAATCGCAATTCGGCGACACAACACTTACGAAAGTTTTCGTAGGAGGGTTAGCATGGGAGACGCCTAAGCAATCATTGTACGAACATTTTGAGAAGTACGGTGAGATCTTGGAGGCGGTTATCATTTCCGATAAGATCACCGGTCGATCCAAGGGTTATGGCTTTGTGACTTTTAAGGAGGCAGAGGCAGCAAAGAAGGCATGTGAAGATGCAACACCAATTATCAACGGCAGACGTGCTAACTGCAACCTAGCTGCACTAGGGGCTCGCCGTCCACCTCGAGCATCTTCCACCACTCCGCAACCCTATCAACGGCAAGTGTCAAACAATAGCAACACCAATGTTGGTGGTACCACCACGGCTGCTGCACCTACTGCTGCAGGTCATGTGCAGTGGTACTATCCTGCTGCTGCTGGTCGTGCTAGTTCGCCTACTACAACGACACCGTTTCATCCCCATCAAGCTGTTCCTTTCTATGGGTACTCTCCAACCTATATTGCAGCTGATGTTGGCTACAATCATAAGTTAAGCTACAGTGGTGGGGCCTACATAAACGGTGGGCAGCATTACACACAGATGTATCCAGGTCAGGCTATGATGGCGGGAGCAAACACATTGATGCCATATTACCCATTTTACCCTTACTCTCACCATCACCACCACCAACATCAACACCAATCCCATCACCAGGCTGCTGCTATGGGCCTACCAGCCCACATTTTCCCACCTTCTTCTGCTGGCCCAATTACTGTTTCTCCTCCCATTATCTCTAAGCCCATTACTCCCATTTGCGTAACCCCTCCCTCAGTGTGCTTGACAGTGGAGTAGGTTCAATTGGAGCAAGGGAGAGCTTAAAGAAAGGAAGAATCATTCAATAATTGCAAGCAAAAGAAGAATGCATGGAAGATTGTGTCTTTGGCTCAGAATCACATTATTATCATCTCATCAAGAATGGCTCATCTTTCCAACCAAAACAAGATAAAAGGGCCCCAAAAAAACCCTAATTTTTTAATCCAATTTTTTTAATTATTAATTGATTTTCTTAGGTATTGGATAATTAATTAATTACAATTAATATATTCATTTATTCTACTCCCTCTAGTTTTCTTCTCTAACCCACATGATCATGGAAATCATGTTGTGTAATAATATCATAGTACTTATGTAATCTCCCCT

Coding sequence (CDS)

ATGACAATGAGCGACTACAACAACAACGACAATAGTAATACTAAATCGCAATTCGGCGACACAACACTTACGAAAGTTTTCGTAGGAGGGTTAGCATGGGAGACGCCTAAGCAATCATTGTACGAACATTTTGAGAAGTACGGTGAGATCTTGGAGGCGGTTATCATTTCCGATAAGATCACCGGTCGATCCAAGGGTTATGGCTTTGTGACTTTTAAGGAGGCAGAGGCAGCAAAGAAGGCATGTGAAGATGCAACACCAATTATCAACGGCAGACGTGCTAACTGCAACCTAGCTGCACTAGGGGCTCGCCGTCCACCTCGAGCATCTTCCACCACTCCGCAACCCTATCAACGGCAAGTGTCAAACAATAGCAACACCAATGTTGGTGGTACCACCACGGCTGCTGCACCTACTGCTGCAGGTCATGTGCAGTGGTACTATCCTGCTGCTGCTGGTCGTGCTAGTTCGCCTACTACAACGACACCGTTTCATCCCCATCAAGCTGTTCCTTTCTATGGGTACTCTCCAACCTATATTGCAGCTGATGTTGGCTACAATCATAAGTTAAGCTACAGTGGTGGGGCCTACATAAACGGTGGGCAGCATTACACACAGATGTATCCAGGTCAGGCTATGATGGCGGGAGCAAACACATTGATGCCATATTACCCATTTTACCCTTACTCTCACCATCACCACCACCAACATCAACACCAATCCCATCACCAGGCTGCTGCTATGGGCCTACCAGCCCACATTTTCCCACCTTCTTCTGCTGGCCCAATTACTGTTTCTCCTCCCATTATCTCTAAGCCCATTACTCCCATTTGCGTAACCCCTCCCTCAGTGTGCTTGACAGTGGAGTAG

Protein sequence

MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQVSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYIAADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYSHHHHHQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo16629	Spo16629	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo16629.1	Spo16629.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16629.1.utr5p.1	Spo16629.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16629.1.CDS.5	Spo16629.1.CDS.5	CDS
Spo16629.1.CDS.4	Spo16629.1.CDS.4	CDS
Spo16629.1.CDS.3	Spo16629.1.CDS.3	CDS
Spo16629.1.CDS.2	Spo16629.1.CDS.2	CDS
Spo16629.1.CDS.1	Spo16629.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16629.1.utr3p.1	Spo16629.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16629.1.exon.5	Spo16629.1.exon.5	exon
Spo16629.1.exon.4	Spo16629.1.exon.4	exon
Spo16629.1.exon.3	Spo16629.1.exon.3	exon
Spo16629.1.exon.2	Spo16629.1.exon.2	exon
Spo16629.1.exon.1	Spo16629.1.exon.1	exon

Homology

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BLAST of Spo16629.1 vs. NCBI nr
Match: gi|902151071|gb|KNA05481.1| (hypothetical protein SOVF_189960 [Spinacia oleracea])

HSP 1 Score: 576.2 bits (1484), Expect = 3.100e-161
Identity = 289/291 (99.31%), Postives = 289/291 (99.31%), Query Frame = 1


		  
Query: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60
           MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI
Sbjct: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60

Query: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQ 120
           TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQ
Sbjct: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQ 120

Query: 121 VSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYI 180
           VSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYI
Sbjct: 121 VSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYI 180

Query: 181 AADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYS--HHHHHQHQ 240
           AADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYS  HHHHHQHQ
Sbjct: 181 AADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYSHHHHHHHQHQ 240

Query: 241 HQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 290
           HQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE
Sbjct: 241 HQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 291

[Close]

BLAST of Spo16629.1 vs. NCBI nr
Match: gi|731375298|ref|XP_010667209.1| (PREDICTED: RNA-binding protein 38 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 452.2 bits (1162), Expect = 6.800e-124
Identity = 240/300 (80.00%), Postives = 257/300 (85.67%), Query Frame = 1


		  
Query: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60
           MTMSDYNNN+N N KS FGDTTLTKVFVGGLAWETPKQ+L+EHFEKYGEI EAVIISDKI
Sbjct: 1   MTMSDYNNNNN-NDKSPFGDTTLTKVFVGGLAWETPKQALFEHFEKYGEIFEAVIISDKI 60

Query: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQP-YQR 120
           TGRSKGYGFVTFKE EAAKKACEDATPIINGRRANCNLAALGARRPPR+SSTTPQP +QR
Sbjct: 61  TGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLAALGARRPPRSSSTTPQPHHQR 120

Query: 121 QVSNNSNTNVGGTTTAAAPTA-----AGHVQWYYPA--AAGRASSPTTTTPFHP---HQA 180
           Q SN SN + G    A +PT+     AGHVQWYYPA  A+GRA+SPT TTPFH    HQA
Sbjct: 121 QASNGSNGSGGSGGNALSPTSAAAPPAGHVQWYYPAAVASGRATSPTPTTPFHAHQHHQA 180

Query: 181 VPFYGYSPTYIAADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPY 240
           VPFYGYSPTYIAADVGYNHKLSYSGGAYINGG HY QMYPGQA+MAGANTLMP YPFYPY
Sbjct: 181 VPFYGYSPTYIAADVGYNHKLSYSGGAYINGG-HYPQMYPGQALMAGANTLMPMYPFYPY 240

Query: 241 SHHHHHQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 290
           SH HHH   HQ  H  AAMGLPAHIFPP+SAGP+T   PII+KP TP+C+ PP+VCLTVE
Sbjct: 241 SHQHHH---HQQPHHQAAMGLPAHIFPPTSAGPMTAPLPIITKPTTPVCIAPPTVCLTVE 295

[Close]

BLAST of Spo16629.1 vs. NCBI nr
Match: gi|731375294|ref|XP_010667207.1| (PREDICTED: RNA-binding protein 38 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 441.0 bits (1133), Expect = 1.600e-120
Identity = 234/294 (79.59%), Postives = 251/294 (85.37%), Query Frame = 1


		  
Query: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60
           MTMSDYNNN+N N KS FGDTTLTKVFVGGLAWETPKQ+L+EHFEKYGEI EAVIISDKI
Sbjct: 1   MTMSDYNNNNN-NDKSPFGDTTLTKVFVGGLAWETPKQALFEHFEKYGEIFEAVIISDKI 60

Query: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQP-YQR 120
           TGRSKGYGFVTFKE EAAKKACEDATPIINGRRANCNLAALGARRPPR+SSTTPQP +QR
Sbjct: 61  TGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLAALGARRPPRSSSTTPQPHHQR 120

Query: 121 QVSNNSNTNVGGTTTAAAPTA-----AGHVQWYYPA--AAGRASSPTTTTPFHP---HQA 180
           Q SN SN + G    A +PT+     AGHVQWYYPA  A+GRA+SPT TTPFH    HQA
Sbjct: 121 QASNGSNGSGGSGGNALSPTSAAAPPAGHVQWYYPAAVASGRATSPTPTTPFHAHQHHQA 180

Query: 181 VPFYGYSPTYIAADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPY 240
           VPFYGYSPTYIAADVGYNHKLSYSGGAYINGG HY QMYPGQA+MAGANTLMP YPFYPY
Sbjct: 181 VPFYGYSPTYIAADVGYNHKLSYSGGAYINGG-HYPQMYPGQALMAGANTLMPMYPFYPY 240

Query: 241 SHHHHHQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPS 284
           SH HHH   HQ  H  AAMGLPAHIFPP+SAGP+T   PII+KP TP+C+ PP+
Sbjct: 241 SHQHHH---HQQPHHQAAMGLPAHIFPPTSAGPMTAPLPIITKPTTPVCIAPPT 289

[Close]

BLAST of Spo16629.1 vs. NCBI nr
Match: gi|645255182|ref|XP_008233380.1| (PREDICTED: RNA-binding protein 38 [Prunus mume])

HSP 1 Score: 325.9 bits (834), Expect = 7.300e-86
Identity = 186/295 (63.05%), Postives = 211/295 (71.53%), Query Frame = 1


		  
Query: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60
           MTMS      N+    QFGDTTLTKVFVGGLAWETPK++L EHF+KYGEILEAVIISDK+
Sbjct: 1   MTMS------NNVINGQFGDTTLTKVFVGGLAWETPKEALREHFDKYGEILEAVIISDKL 60

Query: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQ 120
           TGRSKGYGFVTFKEAEAAKKACEDATP INGRRANCNLA+LGARRP  AS+TT  P  ++
Sbjct: 61  TGRSKGYGFVTFKEAEAAKKACEDATPFINGRRANCNLASLGARRPRSASTTTTPPPPQR 120

Query: 121 VSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFH-----PHQAVPFYGY 180
            SN      G  + + AP  A HVQWYYPA AG     T  TPFH      HQ VPFYGY
Sbjct: 121 GSNGG----GARSMSPAPAPANHVQWYYPAPAG-----TPATPFHHQHHQHHQPVPFYGY 180

Query: 181 SPTYIAADVGYNHKLSYSGGAYINGGQHYT-QMYPGQAMMAGANTLMPYYPFYPYSHHHH 240
           SPTYIAAD+ YNHKL Y+GGAY+NG  HY+ Q+YPGQ M+ G NTLMP YP Y Y     
Sbjct: 181 SPTYIAADMSYNHKLGYTGGAYMNG--HYSPQVYPGQPMV-GPNTLMPMYPLYHY----- 240

Query: 241 HQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 290
                  HHQ+  MGLPAHIFPP++AG +   P I+SKP +   + P +VCL VE
Sbjct: 241 -------HHQSHTMGLPAHIFPPTTAGHVAAVPTIMSKPAS---IAPNTVCLAVE 262

[Close]

BLAST of Spo16629.1 vs. NCBI nr
Match: gi|224109676|ref|XP_002315274.1| (RNA recognition motif-containing family protein [Populus trichocarpa])

HSP 1 Score: 320.9 bits (821), Expect = 2.400e-84
Identity = 183/282 (64.89%), Postives = 209/282 (74.11%), Query Frame = 1


		  
Query: 11  NSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFV 70
           ++N   QFGDTTLTKVFVGGLAWETPK ++ EHFEKYGEILEAVIISDKITGRSKGYGFV
Sbjct: 4   SNNIAGQFGDTTLTKVFVGGLAWETPKDAMREHFEKYGEILEAVIISDKITGRSKGYGFV 63

Query: 71  TFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQVSNNSNTNVG 130
           TFKEAE+AKKACEDA+PIINGRRANCNLA+LGARRP    S TP P Q+      N N G
Sbjct: 64  TFKEAESAKKACEDASPIINGRRANCNLASLGARRP---RSATPAPPQQ----GPNINAG 123

Query: 131 GTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFH--PHQAVPFYGYSPTYIAADVGYNH 190
             +T AAP  A HVQWYYPA +  A+S     PFH   HQAVPFYGYSP YIA D   NH
Sbjct: 124 PRSTPAAP--ANHVQWYYPAGSAAAAS-----PFHHQHHQAVPFYGYSPAYIATDTSGNH 183

Query: 191 KLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYSHHHHHQHQHQSHHQAAAM 250
           KL+Y+GG+Y+NG  H++Q+YPGQAM+ GANTLMP YPFY +             HQ+ AM
Sbjct: 184 KLNYTGGSYMNG--HFSQVYPGQAMV-GANTLMPMYPFYHF-------------HQSQAM 243

Query: 251 GLP-AHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 290
           GLP AHIFPP++AGP+T  P I+SKP  P    P +VCL VE
Sbjct: 244 GLPAAHIFPPTTAGPMTTVPTIMSKP--PSIAPPSAVCLAVE 253

[Close]

BLAST of Spo16629.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFY4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_189960 PE=4 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 2.200e-161
Identity = 289/291 (99.31%), Postives = 289/291 (99.31%), Query Frame = 1


		  
Query: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60
           MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI
Sbjct: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60

Query: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQ 120
           TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQ
Sbjct: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQ 120

Query: 121 VSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYI 180
           VSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYI
Sbjct: 121 VSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYI 180

Query: 181 AADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYS--HHHHHQHQ 240
           AADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYS  HHHHHQHQ
Sbjct: 181 AADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYSHHHHHHHQHQ 240

Query: 241 HQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 290
           HQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE
Sbjct: 241 HQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 291

[Close]

BLAST of Spo16629.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B6K6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_007350 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 4.700e-124
Identity = 240/300 (80.00%), Postives = 257/300 (85.67%), Query Frame = 1


		  
Query: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60
           MTMSDYNNN+N N KS FGDTTLTKVFVGGLAWETPKQ+L+EHFEKYGEI EAVIISDKI
Sbjct: 1   MTMSDYNNNNN-NDKSPFGDTTLTKVFVGGLAWETPKQALFEHFEKYGEIFEAVIISDKI 60

Query: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQP-YQR 120
           TGRSKGYGFVTFKE EAAKKACEDATPIINGRRANCNLAALGARRPPR+SSTTPQP +QR
Sbjct: 61  TGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLAALGARRPPRSSSTTPQPHHQR 120

Query: 121 QVSNNSNTNVGGTTTAAAPTA-----AGHVQWYYPA--AAGRASSPTTTTPFHP---HQA 180
           Q SN SN + G    A +PT+     AGHVQWYYPA  A+GRA+SPT TTPFH    HQA
Sbjct: 121 QASNGSNGSGGSGGNALSPTSAAAPPAGHVQWYYPAAVASGRATSPTPTTPFHAHQHHQA 180

Query: 181 VPFYGYSPTYIAADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPY 240
           VPFYGYSPTYIAADVGYNHKLSYSGGAYINGG HY QMYPGQA+MAGANTLMP YPFYPY
Sbjct: 181 VPFYGYSPTYIAADVGYNHKLSYSGGAYINGG-HYPQMYPGQALMAGANTLMPMYPFYPY 240

Query: 241 SHHHHHQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 290
           SH HHH   HQ  H  AAMGLPAHIFPP+SAGP+T   PII+KP TP+C+ PP+VCLTVE
Sbjct: 241 SHQHHH---HQQPHHQAAMGLPAHIFPPTSAGPMTAPLPIITKPTTPVCIAPPTVCLTVE 295

[Close]

BLAST of Spo16629.1 vs. UniProtKB/TrEMBL
Match: M5XKH9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026384mg PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.600e-84
Identity = 180/276 (65.22%), Postives = 202/276 (73.19%), Query Frame = 1


		  
Query: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60
           MTMS      N+    QFGDTTLTKVFVGGLAWETPK++L EHF+KYGEILEAVIISDK+
Sbjct: 1   MTMS------NNVINGQFGDTTLTKVFVGGLAWETPKEALREHFDKYGEILEAVIISDKL 60

Query: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQ 120
           TGRSKGYGFVTFKEAEAAKKACEDATP+INGRRANCNLA+LGARRP  AS+TTP P    
Sbjct: 61  TGRSKGYGFVTFKEAEAAKKACEDATPVINGRRANCNLASLGARRPRSASTTTPPP-PPP 120

Query: 121 VSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFH--PHQAVPFYGYSPT 180
               SN   GG   + +P  A HVQWYYPA AG     T  TPFH   HQ VPFYGYSPT
Sbjct: 121 PQRGSN---GGGARSMSPAPANHVQWYYPAPAG-----TPATPFHHQHHQPVPFYGYSPT 180

Query: 181 YIAADVGYNHKLSYSGGAYINGGQHYT-QMYPGQAMMAGANTLMPYYPFYPYSHHHHHQH 240
           YIAAD+ YNHKL Y+GGAY+NG  HY+ Q+YPGQ M+ G NTLMP YP Y Y        
Sbjct: 181 YIAADISYNHKLGYTGGAYMNG--HYSPQVYPGQPMV-GPNTLMPMYPLYHY-------- 240

Query: 241 QHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKP 274
               HHQ+  MGLPAHIFPP+++G +   P I+SKP
Sbjct: 241 ----HHQSHTMGLPAHIFPPTTSGHVAAVPTIMSKP 246

[Close]

BLAST of Spo16629.1 vs. UniProtKB/TrEMBL
Match: A9P7Z9_POPTR (RNA recognition motif-containing family protein OS=Populus trichocarpa GN=POPTR_0010s22380g PE=2 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.600e-84
Identity = 183/282 (64.89%), Postives = 209/282 (74.11%), Query Frame = 1


		  
Query: 11  NSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFV 70
           ++N   QFGDTTLTKVFVGGLAWETPK ++ EHFEKYGEILEAVIISDKITGRSKGYGFV
Sbjct: 4   SNNIAGQFGDTTLTKVFVGGLAWETPKDAMREHFEKYGEILEAVIISDKITGRSKGYGFV 63

Query: 71  TFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQVSNNSNTNVG 130
           TFKEAE+AKKACEDA+PIINGRRANCNLA+LGARRP    S TP P Q+      N N G
Sbjct: 64  TFKEAESAKKACEDASPIINGRRANCNLASLGARRP---RSATPAPPQQ----GPNINAG 123

Query: 131 GTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFH--PHQAVPFYGYSPTYIAADVGYNH 190
             +T AAP  A HVQWYYPA +  A+S     PFH   HQAVPFYGYSP YIA D   NH
Sbjct: 124 PRSTPAAP--ANHVQWYYPAGSAAAAS-----PFHHQHHQAVPFYGYSPAYIATDTSGNH 183

Query: 191 KLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYSHHHHHQHQHQSHHQAAAM 250
           KL+Y+GG+Y+NG  H++Q+YPGQAM+ GANTLMP YPFY +             HQ+ AM
Sbjct: 184 KLNYTGGSYMNG--HFSQVYPGQAMV-GANTLMPMYPFYHF-------------HQSQAM 243

Query: 251 GLP-AHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 290
           GLP AHIFPP++AGP+T  P I+SKP  P    P +VCL VE
Sbjct: 244 GLPAAHIFPPTTAGPMTTVPTIMSKP--PSIAPPSAVCLAVE 253

[Close]

BLAST of Spo16629.1 vs. UniProtKB/TrEMBL
Match: F6HNK5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g03610 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 2.100e-84
Identity = 178/280 (63.57%), Postives = 207/280 (73.93%), Query Frame = 1


		  
Query: 12  SNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFVT 71
           SN   QFGDTTLTKVFVGGLAWETPK+++ +HFEKYGEILEAVIISDK+TGRSKGYGFVT
Sbjct: 4   SNAIGQFGDTTLTKVFVGGLAWETPKEAMRDHFEKYGEILEAVIISDKLTGRSKGYGFVT 63

Query: 72  FKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQVSNNSNTNVGG 131
           FKE EAAKKACEDATP+INGRRANCNLA+LGARRP  A+S+TP P+Q        +N G 
Sbjct: 64  FKEPEAAKKACEDATPMINGRRANCNLASLGARRPRSAASSTP-PHQ-------GSNGGS 123

Query: 132 TTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFH--PHQAVPFYGYSPTYIAADVGYNHK 191
             T+AAP  A HVQWYYPA        T   PFH   HQAVPFYGYSP YIAAD+ YNHK
Sbjct: 124 RPTSAAP--ASHVQWYYPAG-------TPAPPFHHQHHQAVPFYGYSPAYIAADISYNHK 183

Query: 192 LSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYSHHHHHQHQHQSHHQAAAMG 251
           LSY+GG+Y+NG  H++Q+YPGQAM+ GAN LMP YPFY +             HQ+  MG
Sbjct: 184 LSYTGGSYMNG--HFSQVYPGQAMV-GANALMPMYPFYHF-------------HQSQTMG 243

Query: 252 LPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 290
            PAH+FPP++ GP+   P IISKP +   + P +VCL VE
Sbjct: 244 HPAHMFPPTTVGPMPTVPAIISKPTS---MAPNTVCLAVE 247

[Close]

BLAST of Spo16629.1 vs. ExPASy Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 9.600e-54
Identity = 127/279 (45.52%), Postives = 162/279 (58.06%), Query Frame = 1


		  
Query: 11  NSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFV 70
           ++N    FGDT LTKVFVGGLAW+T K+++Y+HF KYG+ILEAVIISDK+T RSKGYGFV
Sbjct: 4   SNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFV 63

Query: 71  TFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQVSNNSNTNVG 130
           TFK+A+AA +ACED+TPIINGRRANCNLA+LG R     + T+PQ    Q   N N    
Sbjct: 64  TFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQ----QGPKNGN---- 123

Query: 131 GTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYIAADVGYNHKL 190
               A  P    H QWYYP+                HQAVPFYGY   Y+A ++ +N K+
Sbjct: 124 ---RATPPHVGNHSQWYYPSGFTNQQHQQQN-----HQAVPFYGYPSAYVAPNMTFNQKV 183

Query: 191 SYSGGAYINGGQHYTQMYP------------------GQAMMAGANTLMPYYPFYPYSHH 250
            Y GG Y+NG  +Y QM P                  G+ M+  A+ ++P+Y  YPY   
Sbjct: 184 GYVGGTYMNG--YYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPY--- 243

Query: 251 HHHQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIIS 272
                     HQ+ A+G P     PS + P++ S P IS
Sbjct: 244 ----------HQSQAIGFP----QPSFSKPLSFSTPPIS 247

[Close]

BLAST of Spo16629.1 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.300e-22
Identity = 52/93 (55.91%), Postives = 71/93 (76.34%), Query Frame = 1


		  
Query: 20  DTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFVTFKEAEAAK 79
           DTT TK+FVGGL + T   SL ++FE +G+I EAV+I+D+ TG+S+GYGFVT  +  AA+
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 80  KACEDATPIINGRRANCNLAALGARRPPRASST 113
           +AC+D  PII+GR+AN NLA LGA+  PR+  T
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK--PRSIQT 97

[Close]

BLAST of Spo16629.1 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 4.400e-22
Identity = 52/93 (55.91%), Postives = 71/93 (76.34%), Query Frame = 1


		  
Query: 20  DTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFVTFKEAEAAK 79
           DTT TK+FVGGL + T   SL ++FE +G+I EAV+I+D+ TG+S+GYGFVT  +  AA+
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 80  KACEDATPIINGRRANCNLAALGARRPPRASST 113
           +AC+D  PII+GR+AN NLA LGA+  PR+  T
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLGAK--PRSLQT 120

[Close]

BLAST of Spo16629.1 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.400e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1


		  
Query: 20  DTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFVTFKEAEAAK 79
           DTT TK+FVGGL + T   SL ++FE +G+I EAV+I+D+ TG+S+GYGFVT  +  AA+
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66

Query: 80  KACEDATPIINGRRANCNLAALGAR 105
           +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Spo16629.1 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.400e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1


		  
Query: 20  DTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFVTFKEAEAAK 79
           DTT TK+FVGGL + T   SL ++FE +G+I EAV+I+D+ TG+S+GYGFVT  +  AA+
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 80  KACEDATPIINGRRANCNLAALGAR 105
           +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Spo16629.1 vs. TAIR (Arabidopsis)
Match: AT3G54770.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 211.8 bits (538), Expect = 5.400e-55
Identity = 127/279 (45.52%), Postives = 162/279 (58.06%), Query Frame = 1


		  
Query: 11  NSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFV 70
           ++N    FGDT LTKVFVGGLAW+T K+++Y+HF KYG+ILEAVIISDK+T RSKGYGFV
Sbjct: 4   SNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFV 63

Query: 71  TFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQVSNNSNTNVG 130
           TFK+A+AA +ACED+TPIINGRRANCNLA+LG R     + T+PQ    Q   N N    
Sbjct: 64  TFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQ----QGPKNGN---- 123

Query: 131 GTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYIAADVGYNHKL 190
               A  P    H QWYYP+                HQAVPFYGY   Y+A ++ +N K+
Sbjct: 124 ---RATPPHVGNHSQWYYPSGFTNQQHQQQN-----HQAVPFYGYPSAYVAPNMTFNQKV 183

Query: 191 SYSGGAYINGGQHYTQMYP------------------GQAMMAGANTLMPYYPFYPYSHH 250
            Y GG Y+NG  +Y QM P                  G+ M+  A+ ++P+Y  YPY   
Sbjct: 184 GYVGGTYMNG--YYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPY--- 243

Query: 251 HHHQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIIS 272
                     HQ+ A+G P     PS + P++ S P IS
Sbjct: 244 ----------HQSQAIGFP----QPSFSKPLSFSTPPIS 247

[Close]

BLAST of Spo16629.1 vs. TAIR (Arabidopsis)
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 144.1 bits (362), Expect = 1.400e-34
Identity = 93/198 (46.97%), Postives = 114/198 (57.58%), Query Frame = 1


		  
Query: 16  SQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFVTFKEA 75
           S FGDTT TKVFVGGLAWET  ++L +HFE+YGEILEAV+I+DK TGRSKGYGFVTF++ 
Sbjct: 16  SPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDP 75

Query: 76  EAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQVSNNSNTNVGGTTTA 135
           EAA++AC D TPII+GRRANCNLA+LG  RPP   +  P             N+ G    
Sbjct: 76  EAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIP-------------NMPGRLRP 135

Query: 136 AAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSP----TYIAADVGYNHKLS 195
           A+P   G+VQ    +  G           +P+Q    Y Y       Y     G  +  S
Sbjct: 136 ASP-YIGNVQGPRGSLIGN----------YPYQQPLPYNYQQGVVYPYGVTAYGPEYMYS 189

Query: 196 YSGGAYI-NGGQHYTQMY 209
            S G Y    GQ Y Q+Y
Sbjct: 196 QSQGLYSPYMGQQYLQVY 189

[Close]

BLAST of Spo16629.1 vs. TAIR (Arabidopsis)
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 140.6 bits (353), Expect = 1.500e-33
Identity = 112/277 (40.43%), Postives = 145/277 (52.35%), Query Frame = 1


		  
Query: 9   NDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYG 68
           +  S  +S FGDTT TKVFVGGLAWETP   +  +FE++GEILEAVII+DK TG+SKGYG
Sbjct: 2   SQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG 61

Query: 69  FVTFKEAEAAKKACEDATPIINGRRANCNLAALGARR--PPRASSTTPQPYQRQVSNNSN 128
           FVTF+E+++A +A  D  P+I+GR+ANCN+A+ G  R  PPR    T  P Q Q S   +
Sbjct: 62  FVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQ-SGGPS 121

Query: 129 TNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYIAADVGY 188
           T  G     AAP          PAAA             P    P YGY  TY     GY
Sbjct: 122 TYTG----MAAPLP--------PAAA-------------PQLMYPSYGY--TYNPDQFGY 181

Query: 189 NHKLSYSGGAYINGGQHYTQMYPGQAMMAGAN--TLMP---YY------PFYPYSHHHH- 248
           +  L  +        Q   Q+Y G A    ++  T+MP   YY      P  PY HHHH 
Sbjct: 182 HQALYNTQLQQAQYYQQQQQLYGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHL 241

Query: 249 --HQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPI 270
               +  Q HHQ      P+ +  PS++   + +PP+
Sbjct: 242 PQPYNPQQHHHQ--RFSSPSFLVYPSNS---SFAPPL 245

[Close]

BLAST of Spo16629.1 vs. TAIR (Arabidopsis)
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 135.2 bits (339), Expect = 6.500e-32
Identity = 107/284 (37.68%), Postives = 145/284 (51.06%), Query Frame = 1


		  
Query: 9   NDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYG 68
           ++ S  +S FGDTT TKVFVGGLAWETP   +  +F+++GEILEAVII+DK TG+SKGYG
Sbjct: 2   SNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61

Query: 69  FVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRP--PRASSTTPQPYQRQVSNNSN 128
           FVTF+++++A +A  D  P+I+GR+ANCN+A+ G  RP  PR       P Q Q    S+
Sbjct: 62  FVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQSS 121

Query: 129 TNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYIAADVGY 188
                T  AA    A   Q  YP+                      YGY  TY  ++ GY
Sbjct: 122 Y----TGMAAPVQQAAAAQLMYPS----------------------YGY--TY-NSEYGY 181

Query: 189 NHKLSYSGGAYINGGQHY-TQMY-PGQAMMAGANTLMPYYPFY-------PYSHH----- 248
            H+  Y+  A +   Q+Y  QMY  G A    ++ +MP   +Y       PY HH     
Sbjct: 182 -HQALYN--AQLQQAQYYQQQMYGGGGATSPSSSNIMPSPYYYLQAPSPRPYLHHQQHYQ 241

Query: 249 -HHHQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPIT 276
            HHHQ Q Q   Q         I+P +   P   + P    P++
Sbjct: 242 YHHHQQQQQQQQQRLPSASSYLIYPSNVEAPTPSNVPTSQGPLS 253

[Close]

BLAST of Spo16629.1 vs. TAIR (Arabidopsis)
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 132.5 bits (332), Expect = 4.200e-31
Identity = 104/274 (37.96%), Postives = 138/274 (50.36%), Query Frame = 1


		  
Query: 19  GDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFVTFKEAEAA 78
           GDTT TKVFVGGLAWET K+++ +HFE++GEILEAV+I+DK +GRSKGYGFVTF+EAEAA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 79  KKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQVSNNSNTNVGGTTTAAAP 138
           + AC DATP+I+GRRANCNLA+LG +   R+  +TP        NN    +    T   P
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQ---RSKPSTPNHGGGGRINNMRVMMSTMQTGFGP 127

Query: 139 TAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYG---YSPTYIAADVG-YNHKLSYSG 198
                              P T T  +PH  +  +G   YSP Y +     Y      SG
Sbjct: 128 PP--------------PPQPPTFT-HYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSG 187

Query: 199 GAYINGGQHYTQMYPGQAMMAGANTLMPYYP---------FYPYSHHHHHQHQHQSHHQA 258
           G Y   G +  +   G  + A A +  P+YP         F      +HH   +  HH +
Sbjct: 188 GQY---GVYGNRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSYNPHHYS 247

Query: 259 AAMGLPAHIFPPSSAGPITVSPPIISKPITPICV 280
                P       S   ++ S    S P+  + V
Sbjct: 248 P----PTFSMQQGSRNRLSASTTSYSLPLKKLRV 256

The following BLAST results are available for this feature:

BLAST of Spo16629.1 vs. NCBI nr
BLAST of Spo16629.1 vs. UniProtKB/TrEMBL
BLAST of Spo16629.1 vs. ExPASy Swiss-Prot
BLAST of Spo16629.1 vs. TAIR (Arabidopsis)

BLAST of Spo16629.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902151071\|gb\|KNA05481.1\|	3.1e-161	99.3	hypothetical protein SOVF_1899...	[more]
gi\|731375298\|ref\|XP_010667209.1\|	6.8e-124	80.0	PREDICTED: RNA-binding protein...	[more]
gi\|731375294\|ref\|XP_010667207.1\|	1.6e-120	79.5	PREDICTED: RNA-binding protein...	[more]
gi\|645255182\|ref\|XP_008233380.1\|	7.3e-86	63.0	PREDICTED: RNA-binding protein...	[more]
gi\|224109676\|ref\|XP_002315274.1\|	2.4e-84	64.8	RNA recognition motif-containi...	[more]

BLAST of Spo16629.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QFY4_SPIOL	2.2e-161	99.3	Uncharacterized protein OS=Spi...	[more]
A0A0J8B6K6_BETVU	4.7e-124	80.0	Uncharacterized protein OS=Bet...	[more]
M5XKH9_PRUPE	1.6e-84	65.2	Uncharacterized protein (Fragm...	[more]
A9P7Z9_POPTR	1.6e-84	64.8	RNA recognition motif-containi...	[more]
F6HNK5_VITVI	2.1e-84	63.5	Putative uncharacterized prote...	[more]

BLAST of Spo16629.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
ARP1_ARATH	9.6e-54	45.5	Probable RNA-binding protein A...	[more]
RBM38_CHICK	3.3e-22	55.9	RNA-binding protein 38 OS=Gall...	[more]
RBM38_HUMAN	4.4e-22	55.9	RNA-binding protein 38 OS=Homo...	[more]
RBM38_XENTR	7.4e-22	57.6	RNA-binding protein 38 OS=Xeno...	[more]
RB24A_XENLA	7.4e-22	57.6	RNA-binding protein 24-A OS=Xe...	[more]

BLAST of Spo16629.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G54770.1	5.4e-55	45.5	RNA-binding (RRM/RBD/RNP motif...	[more]
AT1G76460.1	1.4e-34	46.9	RNA-binding (RRM/RBD/RNP motif...	[more]
AT1G78260.1	1.5e-33	40.4	RNA-binding (RRM/RBD/RNP motif...	[more]
AT1G22330.1	6.5e-32	37.6	RNA-binding (RRM/RBD/RNP motif...	[more]
AT1G22910.3	4.2e-31	37.9	RNA-binding (RRM/RBD/RNP motif...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 26..83 score: 2.0
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 25..97 score: 2.6
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 24..101 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 7..100 score: 1.6
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 20..125 score: 9.0
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 267..276 score: 2.3E-35coord: 20..105 score: 2.3
None	No IPR available	PANTHER	PTHR24012:SF421	SUBFAMILY NOT NAMED	coord: 267..276 score: 2.3E-35coord: 20..105 score: 2.3

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0006950	response to stress
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding