Spo16679.1 (mRNA)

Overview
NameSpo16679.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionGb:AAF36750.1, putative isoform 1
LocationSpoScf_00316 : 109558 .. 110351 (+)
Sequence length390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATAAAATTCTGTCATTTGTTGTTTCTTTCTTCAACTGTGGTTTGCTTTGTTTTTTGAATTAGTATATGGTGTCTTATTACTTAAACAGGCACGACCCCTTATGGAAGAAGGTGCTATTGAGGAGCTAATCGACCCTCGTCTTGATAACCGGTATTTAGAACCAGAAGTCATTTGCCTTATGCATGCTGCATCCTTGTGCATTCGACGAGACCCTCACTCCAGACCTCGGATGTCACAGGTAATAAAACATGCCTTTATTGTTGTGGTTAAAAGTTTTTATTGTTACACAGACCTCGGATGTCACAGGTAAGTCTTTATTGTTGTGGTTTCTAACCTCATCGGAAATGGTTATGCTTAGTGTTTGAATCAACTTATATGTTTAAAAACCCTAGCTGACGCCAACTGTTTTTATAGGCTAATATTAAACACGACTCTCATGATCTTGTGATCCAGGCCCCAGGAATCCTTCCACACCATCTCCCAGAGTTGCATGTAGAAAGCTTGTATCTTCTTTCCGATGCCACTCTCTTAAAAAGATAGAAGAAGTTGATATTGACACTGAGCAATTGCAGCAACCAGATGATAGTCCTTCTCGGGACTTAAATTGTATATGTAGCTCATATTTGTTTGACATGGGAAGCACTTCACAGTCTATGCACACGGAAGAGGCAGAATGTCAGGCTAAGAATCCTTCTTGTTATAACCACTATGCACAGCTATATCGGCAGTTTGAGTGGTTGTTGCAGACACTTATTGAAAATAAGCCTTTTGAGCAGGTCCAAGAGTAG

mRNA sequence

ATGGGCACGACCCCTTATGGAAGAAGACCCTCACTCCAGACCTCGGATGTCACAGGCCCCAGGAATCCTTCCACACCATCTCCCAGAGTTGCATGTAGAAAGCTTGTATCTTCTTTCCGATGCCACTCTCTTAAAAAGATAGAAGAAGTTGATATTGACACTGAGCAATTGCAGCAACCAGATGATAGTCCTTCTCGGGACTTAAATTGTATATGTAGCTCATATTTGTTTGACATGGGAAGCACTTCACAGTCTATGCACACGGAAGAGGCAGAATGTCAGGCTAAGAATCCTTCTTGTTATAACCACTATGCACAGCTATATCGGCAGTTTGAGTGGTTGTTGCAGACACTTATTGAAAATAAGCCTTTTGAGCAGGTCCAAGAGTAG

Coding sequence (CDS)

ATGGGCACGACCCCTTATGGAAGAAGACCCTCACTCCAGACCTCGGATGTCACAGGCCCCAGGAATCCTTCCACACCATCTCCCAGAGTTGCATGTAGAAAGCTTGTATCTTCTTTCCGATGCCACTCTCTTAAAAAGATAGAAGAAGTTGATATTGACACTGAGCAATTGCAGCAACCAGATGATAGTCCTTCTCGGGACTTAAATTGTATATGTAGCTCATATTTGTTTGACATGGGAAGCACTTCACAGTCTATGCACACGGAAGAGGCAGAATGTCAGGCTAAGAATCCTTCTTGTTATAACCACTATGCACAGCTATATCGGCAGTTTGAGTGGTTGTTGCAGACACTTATTGAAAATAAGCCTTTTGAGCAGGTCCAAGAGTAG

Protein sequence

MGTTPYGRRPSLQTSDVTGPRNPSTPSPRVACRKLVSSFRCHSLKKIEEVDIDTEQLQQPDDSPSRDLNCICSSYLFDMGSTSQSMHTEEAECQAKNPSCYNHYAQLYRQFEWLLQTLIENKPFEQVQE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo16679Spo16679gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo16679.1Spo16679.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo16679.1.exon.1Spo16679.1.exon.1exon
Spo16679.1.exon.2Spo16679.1.exon.2exon
Spo16679.1.exon.3Spo16679.1.exon.3exon
Spo16679.1.exon.4Spo16679.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo16679.1.CDS.1Spo16679.1.CDS.1CDS
Spo16679.1.CDS.2Spo16679.1.CDS.2CDS
Spo16679.1.CDS.3Spo16679.1.CDS.3CDS
Spo16679.1.CDS.4Spo16679.1.CDS.4CDS


Homology
[Close]
BLAST of Spo16679.1 vs. NCBI nr
Match: gi|902201725|gb|KNA14052.1| (hypothetical protein SOVF_110420 isoform B [Spinacia oleracea])

HSP 1 Score: 243.0 bits (619), Expect = 2.800e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 

		  

Query: 13  QTSDVTGPRNPSTPSPRVACRKLVSSFRCHSLKKIEEVDIDTEQLQQPDDSPSRDLNCIC 72
           QTSDVTGPRNPSTPSPRVACRKLVSSFRCHSLKKIEEVDIDTEQLQQPDDSPSRDLNCIC
Sbjct: 14  QTSDVTGPRNPSTPSPRVACRKLVSSFRCHSLKKIEEVDIDTEQLQQPDDSPSRDLNCIC 73

Query: 73  SSYLFDMGSTSQSMHTEEAECQAKNPSCYNHYAQLYRQFEWLLQTLIENKPFEQVQE 130
           SSYLFDMGSTSQSMHTEEAECQAKNPSCYNHYAQLYRQFEWLLQTLIENKPFEQVQE
Sbjct: 74  SSYLFDMGSTSQSMHTEEAECQAKNPSCYNHYAQLYRQFEWLLQTLIENKPFEQVQE 130
[Close]
BLAST of Spo16679.1 vs. NCBI nr
Match: gi|902201199|gb|KNA13931.1| (hypothetical protein SOVF_112040 [Spinacia oleracea])

HSP 1 Score: 134.4 bits (337), Expect = 1.400e-28
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 1 

		  

Query: 9   RPSLQTSDVTGPRNPSTPSPRVACRKLVSSFRCHSLKKIEEVDIDTEQLQQPDDSPSRDL 68
           R S Q  +V GPR+PST SPR A RKLVSSFRC SLKK+EE D DTEQLQQPDDSPS+DL
Sbjct: 132 RMSSQQLNVAGPRSPSTQSPRAASRKLVSSFRCLSLKKMEEPDSDTEQLQQPDDSPSQDL 191

Query: 69  NCICSSYLFDMGSTSQSMHT------EEAECQAKNPSCYNHYAQLYRQFEWLLQTLIENK 127
               ++Y+  +  T +++H+      ++  CQ  NP+CYNH AQLY+QFE LLQ  IEN+
Sbjct: 192 E---TAYVAHICLTWEALHSQYTQLRQKISCQPDNPTCYNHCAQLYQQFEVLLQRFIENE 251
[Close]
BLAST of Spo16679.1 vs. NCBI nr
Match: gi|731365355|ref|XP_010694481.1| (PREDICTED: uncharacterized protein LOC104907272 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 117.9 bits (294), Expect = 1.300e-23
Identity = 63/127 (49.61%), Postives = 86/127 (67.72%), Query Frame = 1 

		  

Query: 6   YGRRPSLQTSDVTGPRNPSTPSPRVACRKLVSSFRCHSLKKIEEVDIDTEQLQQPDDSPS 65
           + R  + Q ++  GP +PSTPSPR A RK VSSFRC S+KKIEE D +TEQLQQPD+SP 
Sbjct: 129 FDRMSAQQLNETGGPMSPSTPSPRAASRKFVSSFRCLSMKKIEEPDSETEQLQQPDESPC 188

Query: 66  RDLNCICSSYLFDMGSTSQSMH------TEEAECQAKNPSCYNHYAQLYRQFEWLLQTLI 125
            DL    ++Y+  +  T +++H      +++  CQ +N +CYN  AQ Y+QFE LLQ  I
Sbjct: 189 LDLE---TAYVAHICLTWEALHSQYTQLSQKISCQPENSTCYNQCAQQYQQFEVLLQRFI 248

Query: 126 ENKPFEQ 127
           EN+PF+Q
Sbjct: 249 ENEPFQQ 252
[Close]
BLAST of Spo16679.1 vs. NCBI nr
Match: gi|731365359|ref|XP_010694483.1| (PREDICTED: uncharacterized protein LOC104907272 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 117.9 bits (294), Expect = 1.300e-23
Identity = 63/127 (49.61%), Postives = 86/127 (67.72%), Query Frame = 1 

		  

Query: 6   YGRRPSLQTSDVTGPRNPSTPSPRVACRKLVSSFRCHSLKKIEEVDIDTEQLQQPDDSPS 65
           + R  + Q ++  GP +PSTPSPR A RK VSSFRC S+KKIEE D +TEQLQQPD+SP 
Sbjct: 129 FDRMSAQQLNETGGPMSPSTPSPRAASRKFVSSFRCLSMKKIEEPDSETEQLQQPDESPC 188

Query: 66  RDLNCICSSYLFDMGSTSQSMH------TEEAECQAKNPSCYNHYAQLYRQFEWLLQTLI 125
            DL    ++Y+  +  T +++H      +++  CQ +N +CYN  AQ Y+QFE LLQ  I
Sbjct: 189 LDLE---TAYVAHICLTWEALHSQYTQLSQKISCQPENSTCYNQCAQQYQQFEVLLQRFI 248

Query: 126 ENKPFEQ 127
           EN+PF+Q
Sbjct: 249 ENEPFQQ 252
[Close]
BLAST of Spo16679.1 vs. NCBI nr
Match: gi|645243481|ref|XP_008227995.1| (PREDICTED: uncharacterized protein LOC103327436 isoform X2 [Prunus mume])

HSP 1 Score: 106.3 bits (264), Expect = 4.100e-20
Identity = 58/124 (46.77%), Postives = 81/124 (65.32%), Query Frame = 1 

		  

Query: 9   RPSLQTSDVTGPRNPSTPSPRVACRKLVSSFRCHSLKKIEEVDIDTEQLQQPDDSPSRDL 68
           R S Q  + TG + P+TPSPR A +KL S FRC SLKKIEE D +TE LQQP + P +D+
Sbjct: 133 RMSAQHLNETGIQTPTTPSPRSASKKLTSPFRCLSLKKIEEPDDETEHLQQPQNDPYQDI 192

Query: 69  NCICSSYLFDMGSTSQSMHTEEAE------CQAKNPSCYNHYAQLYRQFEWLLQTLIENK 127
               +SY+  +  + +++H +  +      CQ  NP+CYNH AQ ++QF+ LLQ  IEN+
Sbjct: 193 E---TSYVAQICLSWEALHCQYTQLNQLITCQPDNPNCYNHSAQQFQQFQVLLQRFIENE 252
[Close]
BLAST of Spo16679.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R5F3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_110420 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.900e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 

		  

Query: 13  QTSDVTGPRNPSTPSPRVACRKLVSSFRCHSLKKIEEVDIDTEQLQQPDDSPSRDLNCIC 72
           QTSDVTGPRNPSTPSPRVACRKLVSSFRCHSLKKIEEVDIDTEQLQQPDDSPSRDLNCIC
Sbjct: 14  QTSDVTGPRNPSTPSPRVACRKLVSSFRCHSLKKIEEVDIDTEQLQQPDDSPSRDLNCIC 73

Query: 73  SSYLFDMGSTSQSMHTEEAECQAKNPSCYNHYAQLYRQFEWLLQTLIENKPFEQVQE 130
           SSYLFDMGSTSQSMHTEEAECQAKNPSCYNHYAQLYRQFEWLLQTLIENKPFEQVQE
Sbjct: 74  SSYLFDMGSTSQSMHTEEAECQAKNPSCYNHYAQLYRQFEWLLQTLIENKPFEQVQE 130
[Close]
BLAST of Spo16679.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R335_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_112040 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 9.700e-29
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 1 

		  

Query: 9   RPSLQTSDVTGPRNPSTPSPRVACRKLVSSFRCHSLKKIEEVDIDTEQLQQPDDSPSRDL 68
           R S Q  +V GPR+PST SPR A RKLVSSFRC SLKK+EE D DTEQLQQPDDSPS+DL
Sbjct: 132 RMSSQQLNVAGPRSPSTQSPRAASRKLVSSFRCLSLKKMEEPDSDTEQLQQPDDSPSQDL 191

Query: 69  NCICSSYLFDMGSTSQSMHT------EEAECQAKNPSCYNHYAQLYRQFEWLLQTLIENK 127
               ++Y+  +  T +++H+      ++  CQ  NP+CYNH AQLY+QFE LLQ  IEN+
Sbjct: 192 E---TAYVAHICLTWEALHSQYTQLRQKISCQPDNPTCYNHCAQLYQQFEVLLQRFIENE 251
[Close]
BLAST of Spo16679.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BAE2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g093440 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.400e-24
Identity = 63/127 (49.61%), Postives = 86/127 (67.72%), Query Frame = 1 

		  

Query: 6   YGRRPSLQTSDVTGPRNPSTPSPRVACRKLVSSFRCHSLKKIEEVDIDTEQLQQPDDSPS 65
           + R  + Q ++  GP +PSTPSPR A RK VSSFRC S+KKIEE D +TEQLQQPD+SP 
Sbjct: 129 FDRMSAQQLNETGGPMSPSTPSPRAASRKFVSSFRCLSMKKIEEPDSETEQLQQPDESPC 188

Query: 66  RDLNCICSSYLFDMGSTSQSMH------TEEAECQAKNPSCYNHYAQLYRQFEWLLQTLI 125
            DL    ++Y+  +  T +++H      +++  CQ +N +CYN  AQ Y+QFE LLQ  I
Sbjct: 189 LDLE---TAYVAHICLTWEALHSQYTQLSQKISCQPENSTCYNQCAQQYQQFEVLLQRFI 248

Query: 126 ENKPFEQ 127
           EN+PF+Q
Sbjct: 249 ENEPFQQ 252
[Close]
BLAST of Spo16679.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E578_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g093440 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.400e-24
Identity = 63/127 (49.61%), Postives = 86/127 (67.72%), Query Frame = 1 

		  

Query: 6   YGRRPSLQTSDVTGPRNPSTPSPRVACRKLVSSFRCHSLKKIEEVDIDTEQLQQPDDSPS 65
           + R  + Q ++  GP +PSTPSPR A RK VSSFRC S+KKIEE D +TEQLQQPD+SP 
Sbjct: 129 FDRMSAQQLNETGGPMSPSTPSPRAASRKFVSSFRCLSMKKIEEPDSETEQLQQPDESPC 188

Query: 66  RDLNCICSSYLFDMGSTSQSMH------TEEAECQAKNPSCYNHYAQLYRQFEWLLQTLI 125
            DL    ++Y+  +  T +++H      +++  CQ +N +CYN  AQ Y+QFE LLQ  I
Sbjct: 189 LDLE---TAYVAHICLTWEALHSQYTQLSQKISCQPENSTCYNQCAQQYQQFEVLLQRFI 248

Query: 126 ENKPFEQ 127
           EN+PF+Q
Sbjct: 249 ENEPFQQ 252
[Close]
BLAST of Spo16679.1 vs. UniProtKB/TrEMBL
Match: M5WSG3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006090mg PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.400e-19
Identity = 57/124 (45.97%), Postives = 81/124 (65.32%), Query Frame = 1 

		  

Query: 9   RPSLQTSDVTGPRNPSTPSPRVACRKLVSSFRCHSLKKIEEVDIDTEQLQQPDDSPSRDL 68
           R S Q  + TG +  +TPSPR A +KL S FRC SLKKIEE D +TE LQQP++ P +D+
Sbjct: 133 RMSAQHLNETGIQTSTTPSPRSASKKLTSPFRCLSLKKIEEPDDETEHLQQPENDPYQDI 192

Query: 69  NCICSSYLFDMGSTSQSMHTEEAE------CQAKNPSCYNHYAQLYRQFEWLLQTLIENK 127
               +SY+  +  + +++H +  +      CQ  NP+CYNH AQ ++QF+ LLQ  IEN+
Sbjct: 193 E---TSYVAQICLSWEALHCQYTQLNQLITCQPDNPNCYNHSAQQFQQFQVLLQRFIENE 252
[Close]
BLAST of Spo16679.1 vs. TAIR (Arabidopsis)
Match: AT3G20260.1 (Protein of unknown function (DUF1666))

HSP 1 Score: 88.2 bits (217), Expect = 4.000e-18
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 1 

		  

Query: 22  NPSTPSPRVACRKLVSSFRCHSLKKIEEVDIDTEQLQQPD-DSPSRDLNCICSSYLFDMG 81
           +PSTPSPR A +KL S FRC SLKK +  + D E LQ  + D P +DL    ++Y+  + 
Sbjct: 152 SPSTPSPRSASKKLSSPFRCLSLKKFDVPEEDIEHLQPTEVDDPYQDLE---TAYVAQLC 211

Query: 82  STSQSMHTEEAE------CQAKNPSCYNHYAQLYRQFEWLLQTLIENKPFEQ 127
            T +++H +  +      CQ + P+CYNH AQL++QF  LLQ  IEN+PFEQ
Sbjct: 212 LTWEALHCQYTQLSHLISCQPETPTCYNHTAQLFQQFLVLLQRYIENEPFEQ 260
The following BLAST results are available for this feature:
BLAST of Spo16679.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902201725|gb|KNA14052.1|2.8e-61100.hypothetical protein SOVF_1104... [more]
gi|902201199|gb|KNA13931.1|1.4e-2858.8hypothetical protein SOVF_1120... [more]
gi|731365355|ref|XP_010694481.1|1.3e-2349.6PREDICTED: uncharacterized pro... [more]
gi|731365359|ref|XP_010694483.1|1.3e-2349.6PREDICTED: uncharacterized pro... [more]
gi|645243481|ref|XP_008227995.1|4.1e-2046.7PREDICTED: uncharacterized pro... [more]
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BLAST of Spo16679.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R5F3_SPIOL1.9e-61100.Uncharacterized protein OS=Spi... [more]
A0A0K9R335_SPIOL9.7e-2958.8Uncharacterized protein OS=Spi... [more]
A0A0J8BAE2_BETVU9.4e-2449.6Uncharacterized protein OS=Bet... [more]
A0A0J8E578_BETVU9.4e-2449.6Uncharacterized protein OS=Bet... [more]
M5WSG3_PRUPE1.4e-1945.9Uncharacterized protein OS=Pru... [more]
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BLAST of Spo16679.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16679.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G20260.14.0e-1845.5Protein of unknown function (D... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008195Ribosomal protein L34AePANTHERPTHR1075960S RIBOSOMAL PROTEIN L34coord: 24..126
score: 2.0
IPR012870Protein of unknown function DUF1666PFAMPF07891DUF1666coord: 89..126
score: 6.
NoneNo IPR availablePANTHERPTHR10759:SF4SUBFAMILY NOT NAMEDcoord: 24..126
score: 2.0

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0044237 cellular metabolic process
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006996 organelle organization
biological_process GO:0043933 protein-containing complex subunit organization
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome