Spo16694.1 (mRNA)

Overview
NameSpo16694.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 18102837 .. 18103040 (+)
Sequence length204
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCGCTGCCGCAGCAGCAGCTTCAGCTGCAACCTCAATCGTCAAACTCGACACCTCCGCCTTAGCCTCGCCTTTCCGAAGCCGGATCTCTCAGCTCCGCCTTACCTCTCCTTCGCCTCGGTTCTCCCAATTTCGACCCTTGACCTCTTCCAATTCTTCTGGTAAATCCATCCCTCTGTTTTGTCTCTTTTGGTTCTAA

mRNA sequence

ATGGCCACCGCTGCCGCAGCAGCAGCTTCAGCTGCAACCTCAATCGTCAAACTCGACACCTCCGCCTTAGCCTCGCCTTTCCGAAGCCGGATCTCTCAGCTCCGCCTTACCTCTCCTTCGCCTCGGTTCTCCCAATTTCGACCCTTGACCTCTTCCAATTCTTCTGGTAAATCCATCCCTCTGTTTTGTCTCTTTTGGTTCTAA

Coding sequence (CDS)

ATGGCCACCGCTGCCGCAGCAGCAGCTTCAGCTGCAACCTCAATCGTCAAACTCGACACCTCCGCCTTAGCCTCGCCTTTCCGAAGCCGGATCTCTCAGCTCCGCCTTACCTCTCCTTCGCCTCGGTTCTCCCAATTTCGACCCTTGACCTCTTCCAATTCTTCTGGTAAATCCATCCCTCTGTTTTGTCTCTTTTGGTTCTAA

Protein sequence

MATAAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSGKSIPLFCLFWF
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo16694Spo16694gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo16694.1Spo16694.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo16694.1.exon.1Spo16694.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo16694.1.CDS.1Spo16694.1.CDS.1CDS


Homology
[Close]
BLAST of Spo16694.1 vs. NCBI nr
Match: gi|902212063|gb|KNA16859.1| (hypothetical protein SOVF_085380 [Spinacia oleracea])

HSP 1 Score: 94.4 bits (233), Expect = 8.300e-17
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

		  

Query: 1  MATAAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSG 57
          MATAAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSG
Sbjct: 1  MATAAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSG 56
[Close]
BLAST of Spo16694.1 vs. NCBI nr
Match: gi|731333849|ref|XP_010677933.1| (PREDICTED: 3-oxoacyl-[acyl-carrier-protein])

HSP 1 Score: 60.8 bits (146), Expect = 1.000e-6
Identity = 41/53 (77.36%), Postives = 42/53 (79.25%), Query Frame = 1 

		  

Query: 4  AAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSG 57
          AAAAAASAATSI KLDTSALA PFR RIS LRLTS     S  RPLTSS+SSG
Sbjct: 2  AAAAAASAATSIAKLDTSALALPFRRRISLLRLTSSPLPISHSRPLTSSHSSG 54
[Close]
BLAST of Spo16694.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCZ9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_085380 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.800e-17
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

		  

Query: 1  MATAAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSG 57
          MATAAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSG
Sbjct: 1  MATAAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSG 56
[Close]
BLAST of Spo16694.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CCC9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g110690 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.100e-7
Identity = 41/53 (77.36%), Postives = 42/53 (79.25%), Query Frame = 1 

		  

Query: 4  AAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSG 57
          AAAAAASAATSI KLDTSALA PFR RIS LRLTS     S  RPLTSS+SSG
Sbjct: 2  AAAAAASAATSIAKLDTSALALPFRRRISLLRLTSSPLPISHSRPLTSSHSSG 54
The following BLAST results are available for this feature:
BLAST of Spo16694.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902212063|gb|KNA16859.1|8.3e-17100.hypothetical protein SOVF_0853... [more]
gi|731333849|ref|XP_010677933.1|1.0e-677.3PREDICTED: 3-oxoacyl-[acyl-car... [more]
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BLAST of Spo16694.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RCZ9_SPIOL5.8e-17100.Uncharacterized protein OS=Spi... [more]
A0A0J8CCC9_BETVU7.1e-777.3Uncharacterized protein OS=Bet... [more]
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BLAST of Spo16694.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16694.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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