Spo16988.1 (mRNA) | SpinachBase

Overview


Name	Spo16988.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr4 : 78633838 .. 78634137 (+)
Sequence length	300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATACAAATCTCGGCTACTATCTAAGCCACCAGTTGCAGCTGGCGGAGGAGTCCACATGAGGATTAAGAGGAGAGATACTCCGGCGGCATCGACTTCTTCTCCGTCTTTAAAAGGGTTGGCATTATTATTTTTTGGTACTCAAGATGACACTAACAGGGATAAGTTGAGAAAACAGCAAATGATGAAAGAGTTGTTAATAAAAAGGGCGTTATCTCCGCCACCAAGACGGCTCACCTTGCGGTGGCGATACTTTCAGCCTACGCCGAGTCGCCTTTCTATGATGTCCACGGCCTGA

mRNA sequence

ATGCAATACAAATCTCGGCTACTATCTAAGCCACCAGTTGCAGCTGGCGGAGGAGTCCACATGAGGATTAAGAGGAGAGATACTCCGGCGGCATCGACTTCTTCTCCGTCTTTAAAAGGGTTGGCATTATTATTTTTTGGTACTCAAGATGACACTAACAGGGATAAGTTGAGAAAACAGCAAATGATGAAAGAGTTGTTAATAAAAAGGGCGTTATCTCCGCCACCAAGACGGCTCACCTTGCGGTGGCGATACTTTCAGCCTACGCCGAGTCGCCTTTCTATGATGTCCACGGCCTGA

Coding sequence (CDS)

ATGCAATACAAATCTCGGCTACTATCTAAGCCACCAGTTGCAGCTGGCGGAGGAGTCCACATGAGGATTAAGAGGAGAGATACTCCGGCGGCATCGACTTCTTCTCCGTCTTTAAAAGGGTTGGCATTATTATTTTTTGGTACTCAAGATGACACTAACAGGGATAAGTTGAGAAAACAGCAAATGATGAAAGAGTTGTTAATAAAAAGGGCGTTATCTCCGCCACCAAGACGGCTCACCTTGCGGTGGCGATACTTTCAGCCTACGCCGAGTCGCCTTTCTATGATGTCCACGGCCTGA

Protein sequence

MQYKSRLLSKPPVAAGGGVHMRIKRRDTPAASTSSPSLKGLALLFFGTQDDTNRDKLRKQQMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo16988	Spo16988	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo16988.1	Spo16988.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16988.1.exon.1	Spo16988.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16988.1.CDS.1	Spo16988.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo16988.1 vs. NCBI nr
Match: gi|902222046|gb|KNA19081.1| (hypothetical protein SOVF_064880 [Spinacia oleracea])

HSP 1 Score: 196.1 bits (497), Expect = 3.000e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1

		  
Query: 1   MQYKSRLLSKPPVAAGGGVHMRIKRRDTPAASTSSPSLKGLALLFFGTQDDTNRDKLRKQ 60
           MQYKSRLLSKPPVAAGGGVHMRIKRRDTPAASTSSPSLKGLALLFFGTQDDTNRDKLRKQ
Sbjct: 1   MQYKSRLLSKPPVAAGGGVHMRIKRRDTPAASTSSPSLKGLALLFFGTQDDTNRDKLRKQ 60

Query: 61  QMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA 100
           QMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA
Sbjct: 61  QMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA 99

[Close]

BLAST of Spo16988.1 vs. NCBI nr
Match: gi|870861753|gb|KMT13023.1| (hypothetical protein BVRB_4g087380 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 125.2 bits (313), Expect = 6.500e-26
Identity = 75/119 (63.03%), Postives = 84/119 (70.59%), Query Frame = 1

		  
Query: 1   MQYKSRLLSKPPVAAGGGVHMRIKRRD-TPAAS-------------------TSSPSLKG 60
           MQYKSRL SKPP A  GGV MRI+RR+ TP+ S                   T+S + KG
Sbjct: 1   MQYKSRLSSKPP-APTGGVQMRIRRREITPSPSGAKPGSINPTSTSVSTKQTTNSSASKG 60

Query: 61  LALLFFGTQDDTNRDKLRKQQMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA 100
           L L+FFGTQD +   KLR QQMMKELLIKRALSPPP+RLTLRWR+FQ TPSRLSMMSTA
Sbjct: 61  LELMFFGTQDYSYGGKLRTQQMMKELLIKRALSPPPKRLTLRWRHFQATPSRLSMMSTA 118

[Close]

BLAST of Spo16988.1 vs. NCBI nr
Match: gi|870868218|gb|KMT19070.1| (hypothetical protein BVRB_1g014690 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 96.7 bits (239), Expect = 2.500e-17
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 1

		  
Query: 1   MQYKSRLLSKPPVAAGGGVHMRIKR-------RDTPAASTSSPSLKGLALLFFGTQDDTN 60
           ++ K +LL+KP  AAGG   M+I R       R+ PA    S + KGLAL+  G QD  +
Sbjct: 5   IENKRQLLAKPR-AAGGRAQMKIYRHRSMITKREVPAGG--SDAFKGLALVLHGIQDLCD 64

Query: 61  RDKLRKQQMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMST 99
            DK+RKQQMM E+LI+RALSPPP+RLTLRWR F+PTPSRLSMMST
Sbjct: 65  -DKMRKQQMM-EILIRRALSPPPKRLTLRWRNFRPTPSRLSMMST 104

[Close]

BLAST of Spo16988.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHV6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_064880 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.100e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1

		  
Query: 1   MQYKSRLLSKPPVAAGGGVHMRIKRRDTPAASTSSPSLKGLALLFFGTQDDTNRDKLRKQ 60
           MQYKSRLLSKPPVAAGGGVHMRIKRRDTPAASTSSPSLKGLALLFFGTQDDTNRDKLRKQ
Sbjct: 1   MQYKSRLLSKPPVAAGGGVHMRIKRRDTPAASTSSPSLKGLALLFFGTQDDTNRDKLRKQ 60

Query: 61  QMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA 100
           QMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA
Sbjct: 61  QMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA 99

[Close]

BLAST of Spo16988.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CLX7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g087380 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.500e-26
Identity = 75/119 (63.03%), Postives = 84/119 (70.59%), Query Frame = 1

		  
Query: 1   MQYKSRLLSKPPVAAGGGVHMRIKRRD-TPAAS-------------------TSSPSLKG 60
           MQYKSRL SKPP A  GGV MRI+RR+ TP+ S                   T+S + KG
Sbjct: 1   MQYKSRLSSKPP-APTGGVQMRIRRREITPSPSGAKPGSINPTSTSVSTKQTTNSSASKG 60

Query: 61  LALLFFGTQDDTNRDKLRKQQMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA 100
           L L+FFGTQD +   KLR QQMMKELLIKRALSPPP+RLTLRWR+FQ TPSRLSMMSTA
Sbjct: 61  LELMFFGTQDYSYGGKLRTQQMMKELLIKRALSPPPKRLTLRWRHFQATPSRLSMMSTA 118

[Close]

BLAST of Spo16988.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CZ68_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g014690 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.700e-17
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 1

		  
Query: 1   MQYKSRLLSKPPVAAGGGVHMRIKR-------RDTPAASTSSPSLKGLALLFFGTQDDTN 60
           ++ K +LL+KP  AAGG   M+I R       R+ PA    S + KGLAL+  G QD  +
Sbjct: 5   IENKRQLLAKPR-AAGGRAQMKIYRHRSMITKREVPAGG--SDAFKGLALVLHGIQDLCD 64

Query: 61  RDKLRKQQMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMST 99
            DK+RKQQMM E+LI+RALSPPP+RLTLRWR F+PTPSRLSMMST
Sbjct: 65  -DKMRKQQMM-EILIRRALSPPPKRLTLRWRNFRPTPSRLSMMST 104

The following BLAST results are available for this feature:

BLAST of Spo16988.1 vs. NCBI nr
BLAST of Spo16988.1 vs. UniProtKB/TrEMBL
BLAST of Spo16988.1 vs. ExPASy Swiss-Prot
BLAST of Spo16988.1 vs. TAIR (Arabidopsis)

BLAST of Spo16988.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902222046\|gb\|KNA19081.1\|	3.0e-47	100.	hypothetical protein SOVF_0648...	[more]
gi\|870861753\|gb\|KMT13023.1\|	6.5e-26	63.0	hypothetical protein BVRB_4g08...	[more]
gi\|870868218\|gb\|KMT19070.1\|	2.5e-17	58.1	hypothetical protein BVRB_1g01...	[more]

BLAST of Spo16988.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RHV6_SPIOL	2.1e-47	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CLX7_BETVU	4.5e-26	63.0	Uncharacterized protein OS=Bet...	[more]
A0A0J8CZ68_BETVU	1.7e-17	58.1	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo16988.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo16988.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description