Spo17010.1 (mRNA)

Overview
NameSpo17010.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionPhotosystem II CP43 reaction center protein (PSII 43 kDa protein) (Protein CP-43)
LocationSpoScf_02857 : 5726 .. 9493 (-)
Sequence length1137
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGAGTTGTATGCTGCGTTCGGGGAGGATGAATCGCTCCCAAAAAGGAATCTTGGTATATCCAGATAATAGGTAGGAGCATAAACTGAAACATTCTGGAGCTACAAGGATAGTAATTTGAAGTGGCTCATTTCGTACCAGAGAAGCCTATGTATGAACAATGATTAATTTTACTTCCCCACCTAGCTACTATAGGATGGGGGGTAGGCCCTGGCGGGGAAGTTATAGACACTTTTCCATACTTTGTATCGGGAGTACTTCACTTAATTTCGTCGGCCGTATTGGGCTTTGGTGGTATTTATCATGCACTTTTGGGCCCTNTCTTTAATGGAACTTTAACTTTAGCCGGCCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCTCGACTTATCAATTTATCTGGTAAACTACTTGGAGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACTTATTTGAAGTGGCTCATTTCGTACCAGAGAAGCCTATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGGGTAGGCCCTGGCGGGGAAGTTATAGACACTTTTCCATACTTTGTATCGGGAGTACTTCACTTAATTTCGTTAGCCCGCTTGTTGAAGGTGAAGTTTAGAAATAGAACAATTCCTTCTGTTGTGTATCCCCGATTGATGCAACCTCAGATACTATGCTCAGTTATAGATTTTAGTATTGAACGAAAGGTTACACCTTTGTGTTTTGTATTACAGGTCAATTCTACTTCCTAGTAATGTAATATAGTACCAATAGGCGGCATAGGGGAAAAAGCACTACACNCCTTTCCATCTTCGGTTATGTGTGGATAGATAGAAATAAAATGACCACAATTTTGGGCATTCACTTAATCTTGTTAGGTATAGGCGCTTTTCTTCTAGTATTCAAGGCTCTTTATTTTGGGGGCGTATATGATACCTGGGCTCCCGGAGGTGGAGATGTAAGAAAAATTACCAACGTCACCCTTAGTCCAAGTATTATATTTGGTTATTTACTAAAATCGCCTTTTGGCGTGCACGAGACCTAATCTAGTTCATGTATAAATTGATCATTTGTAAATCTTGTTATGTAGGTGTTACCATATTGCTTAATAATATAGTAAAATACTCAAATGAACCTGGTCCACGTTAATTTTATCGTGGACCAAGGGCATAAACGTTAAATCACAGGGTATGGCACGTGTGAAGTTTTTCATACATCCCGTTTTCTACCTTCCTCCACTCATCCCCTGTTCCCCATTCCCCGGTTTTCTGAAATTTGTTTCTCTCTCTTAAAATGCTTATTTCCCCTCCCCTCTCAAGTGCTTAGACACAATCTCTCCAGATTGTCTCTCCTCAAGTTCGTTTAAATTTGCTTATTTTTCTTCTTTGATCCTTTATTTTTCGTTGTTCTTTTGCAATGGTGAACATAAAAGGTGGTGCGACTGCGACATGCTGAAAGAGAAGTCACCGAAGTTGATTGCTAGTAAATTTTGTGTATTTTTTCCTTTTATTGACTTTAGGTTACAATGTTCATATTTCAGAGATGAATTTGTTATTCATTTTGTAATTTAGATGGCCGGAGATTTCTCACTTTAGATGTCGCATTCATTCAGAAAAATTATTGGCGTTCGATTTTTGTAGTTTGTGCTTTATTTATTTACTAATCTTTATGTGATTTCTATCGTTGAAGTTTTTTTTCATGGTTGAATTTCAATTTCTCACGTTTTAACTTGATTCTACCAGTTTAGGTTTTAAAACTAGGATTTACTAATTTGATCTTTTTTTTACTATAGTAATGGGTGCTTAACTTAATAATTTGGTATTGTAGCATATGTGATTTCAATTTATTTTTTAAGAATTAGATGTCTCAATTTGTTATGGACTACAGTTGTGTGATTGTAACTGAATATTGGTTTTGTCTCTCTTTTCAGACATAGTGATTGTTTTTAGTCAAAATGGTCATTGTAGGAAGTTTAGAGATACTTTGATTAAAAAGGGTGTTTATTTAAGTTGTTTGAGGGTTAATATGTGAATAAGAGGATCGCTATATACGAAGTATGTAAAAAAGGTCAACTTAGGGAGAATAGGTTACTTCGATTCAAAATGGAAGTTTATCTTGTTTAAGGGTCACTATCACTACAAGAAATGGAATAATTTCAGACCGCCAAAAGTGGTCGGTAAAACACGAAATACGGTTGGTAAAATGTTTAGCGACCGCCAACGGTCGTAAAAAAGGCGGTTAGTGTTCACCTGGACGGTAATTAAGGAAACTCCGACTGTAAAGCGGTCGCTAAATTTTACCGTCTGCAATAGCGACTGCATGATAGTCGTTAATTTAGCGACTGACAAGCGGTCGCTAAATTAGCGACTGCCAAAGCGGTCGCTAAATTAGCAACTACCATAGGCGGTTGCTAATTTACCGACTGCCTGAGCGGTCGCTAAATTTGTGACTGCCAAAGCGGTCTCTAAATTAGCAACCGCCTAAGGTAGTCGAGATCTTACTAGTTTAGTCGCTATTTAAGTATTATAATTTCTGCTGGGATTTATTTTTGCGGTCACTAATCTACCTGTAGTGGTTGGTAAATTTGTATGCAAATATCATTTCGTGATCGTGATATATTATCGTATATATACGAATTTATATAAATCCTGTAAAATTGTATGAAACCTGCTCAAAGTTATATTAAACCTGTTCAAATGAATGGAGGACCTCACTCTCTCGAGGCGTCTTAATCGCTGGAATTACAGACCACGTTTTCTGTCTGGGACTGACGCCCTCCCTCGCCTTCTTTCAAGGGAATGGAGGCTTGTAAAGCCTTTATTCCAGGCAGAAATGTATAGGCTGTCTGCCAAGAGCCATGCTTGGGTTCCCAACAGTTGGCTTCCCCATGTGTGGCAGTTTACCAATAGGGTCTTTCTCGCGACCGTTGGTCTTTGTCCATATTTACATATAGGTAGTCTTCCCTTTTTGTGTGAATAGTGTAGATAATGTTTTTCTGTTCTTCGCTGATCTCTTTGGCTTGTGCAGAATCTGCTATGGCTCGTCTGTCCCCATAAGACAAAGGGTTGGGGAAGATACCTGATTGGTTGTCCCAGGTGTATGGACAATGTTCTCAAAGCCGTAGAGGCTAAGAGGAAGGAATCCTGTAAGAAATATGATGAGGCGGCCTGCGGTGACCTCCCTAAGGTACTTTCTATTTGTTTGACCACGTTCTGAAGTCTTTTGGGTTTATACTGACTTTGGTTTCTTCCTCTCTAGGGGCCCACTGCGTCGTTTACAGAGAAGCGTCCTGCTCCCTTGTCGACTGCCCCTAAAGCAAAGCGTCCCTTCTTTAAGATGAAGAGCAGCGCGGATGTTGTGGTGACGCCTGGGCCAGAGCCGTCGGCTACACCTGCTGGGGGTGTGGGGGTTTCTTCCCCACGAGTGGAGGATCTTTCTGCGGCTACTGTAGCCAAGGAGGCGTCTCCCCAGGTGGCAGATGAAGTTTGTCCTGTGGCCAAGGAGGCTTCTGCCGAGGCGGTTGTGGGTGTTGACCGTGCTGCTGACCCATTGCCTAGGGAGAAGGTGAGCAGGGAGTCAAGAGACGCTTCTCAGGCTGGGGACACGTCGATGCCCCCACCTGCTTCGCCAGCGGGCAAGCTTCGTAATAATTGGGACGACTTGCTAGCTTTGTAG

mRNA sequence

ATGGAAGAAGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGAGTTGTATGCTGCGTTCGGGGAGGATGAATCGCTCCCAAAAAGGAATCTTGGATGGGGGGTAGGCCCTGGCGGGGAAGTTATAGACACTTTTCCATACTTTGTATCGGGAGTACTTCACTTAATTTCGTCGGCCGTATTGGGCTTTGGTGGTATTTATCATGCACTTTTGGGCCCTNTCTTTAATGGAACTTTAACTTTAGCCGGCCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCTCGACTTATCAATTTATCTGGTAAACTACTTGGAGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACTTATTTGAAGTGGCTCATTTCGTACCAGAGAAGCCTATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGGGTAGGCCCTGGCGGGGAAGTTATAGACACTTTTCCATACTTTGTATCGGGAGTACTTCACTTAATTTCGTTAGCCCGCTTGTTGAAGAATCTGCTATGGCTCGTCTGTCCCCATAAGACAAAGGGTTGGGGAAGATACCTGATTGGTTGTCCCAGGTGTATGGACAATGTTCTCAAAGCCGTAGAGGCTAAGAGGAAGGAATCCTGTAAGAAATATGATGAGGCGGCCTGCGGTGACCTCCCTAAGGGGCCCACTGCGTCGTTTACAGAGAAGCGTCCTGCTCCCTTGTCGACTGCCCCTAAAGCAAAGCGTCCCTTCTTTAAGATGAAGAGCAGCGCGGATGTTGTGGTGACGCCTGGGCCAGAGCCGTCGGCTACACCTGCTGGGGGTGTGGGGGTTTCTTCCCCACGAGTGGAGGATCTTTCTGCGGCTACTGTAGCCAAGGAGGCGTCTCCCCAGGTGGCAGATGAAGTTTGTCCTGTGGCCAAGGAGGCTTCTGCCGAGGCGGTTGTGGGTGTTGACCGTGCTGCTGACCCATTGCCTAGGGAGAAGGTGAGCAGGGAGTCAAGAGACGCTTCTCAGGCTGGGGACACGTCGATGCCCCCACCTGCTTCGCCAGCGGGCAAGCTTCGTAATAATTGGGACGACTTGCTAGCTTTGTAG

Coding sequence (CDS)

ATGGAAGAAGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGAGTTGTATGCTGCGTTCGGGGAGGATGAATCGCTCCCAAAAAGGAATCTTGGATGGGGGGTAGGCCCTGGCGGGGAAGTTATAGACACTTTTCCATACTTTGTATCGGGAGTACTTCACTTAATTTCGTCGGCCGTATTGGGCTTTGGTGGTATTTATCATGCACTTTTGGGCCCTNTCTTTAATGGAACTTTAACTTTAGCCGGCCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCTCGACTTATCAATTTATCTGGTAAACTACTTGGAGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACTTATTTGAAGTGGCTCATTTCGTACCAGAGAAGCCTATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGGGTAGGCCCTGGCGGGGAAGTTATAGACACTTTTCCATACTTTGTATCGGGAGTACTTCACTTAATTTCGTTAGCCCGCTTGTTGAAGAATCTGCTATGGCTCGTCTGTCCCCATAAGACAAAGGGTTGGGGAAGATACCTGATTGGTTGTCCCAGGTGTATGGACAATGTTCTCAAAGCCGTAGAGGCTAAGAGGAAGGAATCCTGTAAGAAATATGATGAGGCGGCCTGCGGTGACCTCCCTAAGGGGCCCACTGCGTCGTTTACAGAGAAGCGTCCTGCTCCCTTGTCGACTGCCCCTAAAGCAAAGCGTCCCTTCTTTAAGATGAAGAGCAGCGCGGATGTTGTGGTGACGCCTGGGCCAGAGCCGTCGGCTACACCTGCTGGGGGTGTGGGGGTTTCTTCCCCACGAGTGGAGGATCTTTCTGCGGCTACTGTAGCCAAGGAGGCGTCTCCCCAGGTGGCAGATGAAGTTTGTCCTGTGGCCAAGGAGGCTTCTGCCGAGGCGGTTGTGGGTGTTGACCGTGCTGCTGACCCATTGCCTAGGGAGAAGGTGAGCAGGGAGTCAAGAGACGCTTCTCAGGCTGGGGACACGTCGATGCCCCCACCTGCTTCGCCAGCGGGCAAGCTTCGTAATAATTGGGACGACTTGCTAGCTTTGTAG

Protein sequence

MEEGGNKHTWRAQYNGELYAAFGEDESLPKRNLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPXFNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARLLKNLLWLVCPHKTKGWGRYLIGCPRCMDNVLKAVEAKRKESCKKYDEAACGDLPKGPTASFTEKRPAPLSTAPKAKRPFFKMKSSADVVVTPGPEPSATPAGGVGVSSPRVEDLSAATVAKEASPQVADEVCPVAKEASAEAVVGVDRAADPLPREKVSRESRDASQAGDTSMPPPASPAGKLRNNWDDLLAL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo17010Spo17010gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo17010.1Spo17010.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17010.1.CDS.4Spo17010.1.CDS.4CDS
Spo17010.1.CDS.3Spo17010.1.CDS.3CDS
Spo17010.1.CDS.2Spo17010.1.CDS.2CDS
Spo17010.1.CDS.1Spo17010.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17010.1.exon.4Spo17010.1.exon.4exon
Spo17010.1.exon.3Spo17010.1.exon.3exon
Spo17010.1.exon.2Spo17010.1.exon.2exon
Spo17010.1.exon.1Spo17010.1.exon.1exon


Homology
[Close]
BLAST of Spo17010.1 vs. NCBI nr
Match: gi|11497521|ref|NP_054929.1| (photosystem II 44 kDa protein [Spinacia oleracea])

HSP 1 Score: 223.4 bits (568), Expect = 6.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. NCBI nr
Match: gi|817528716|ref|YP_009136597.1| (photosystem II CP43 protein (plastid) [Viola seoulensis])

HSP 1 Score: 223.4 bits (568), Expect = 6.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. NCBI nr
Match: gi|33328112|gb|AAQ09501.1| (photosystem II cp43 protein, partial (chloroplast) [Spinacia oleracea])

HSP 1 Score: 223.4 bits (568), Expect = 6.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. NCBI nr
Match: gi|1020267080|gb|AMZ03431.1| (photosystem II CP43 protein (chloroplast) [Bienertia sinuspersici])

HSP 1 Score: 223.4 bits (568), Expect = 6.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. NCBI nr
Match: gi|372000485|gb|AEX65319.1| (photosystem II protein CP43, partial (chloroplast) [Mollugo verticillata])

HSP 1 Score: 223.4 bits (568), Expect = 6.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 30  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 89

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 90  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 138
[Close]
BLAST of Spo17010.1 vs. UniProtKB/TrEMBL
Match: H2FAK5_ASPOF (Photosystem II CP43 reaction center protein OS=Asparagus officinalis GN=psbC PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. UniProtKB/TrEMBL
Match: H2BBT1_MOLVE (Photosystem II CP43 reaction center protein (Fragment) OS=Mollugo verticillata GN=psbC PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 30  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 89

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 90  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 138
[Close]
BLAST of Spo17010.1 vs. UniProtKB/TrEMBL
Match: H6T036_ASPOF (Photosystem II CP43 reaction center protein (Fragment) OS=Asparagus officinalis GN=psbC PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 30  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 89

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 90  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 138
[Close]
BLAST of Spo17010.1 vs. UniProtKB/TrEMBL
Match: A0A159ZR97_9CARY (Photosystem II CP43 protein OS=Bienertia sinuspersici GN=psbC PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. UniProtKB/TrEMBL
Match: K4KK62_VIOPU (Photosystem II CP43 reaction center protein (Fragment) OS=Viola pubescens GN=psbC PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. ExPASy Swiss-Prot
Match: PSBC_SPIOL (Photosystem II CP43 reaction center protein OS=Spinacia oleracea GN=psbC PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.200e-57
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. ExPASy Swiss-Prot
Match: PSBC_CRYJA (Photosystem II CP43 reaction center protein OS=Cryptomeria japonica GN=psbC PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 7.100e-57
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGE++DTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEIVDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. ExPASy Swiss-Prot
Match: PSBC_WELMI (Photosystem II CP43 reaction center protein OS=Welwitschia mirabilis GN=psbC PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.200e-56
Identity = 103/109 (94.50%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF+
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFI 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGE++DTFPYFVSG+LHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEIVDTFPYFVSGILHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. ExPASy Swiss-Prot
Match: PSBC_MANES (Photosystem II CP43 reaction center protein OS=Manihot esculenta GN=psbC PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.200e-56
Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTL+LAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLSLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. ExPASy Swiss-Prot
Match: PSBC_CERDE (Photosystem II CP43 reaction center protein OS=Ceratophyllum demersum GN=psbC PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.200e-56
Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTL+LAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 5   FNGTLSLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 64

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 65  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 113
[Close]
BLAST of Spo17010.1 vs. TAIR (Arabidopsis)
Match: ATCG00280.1 (photosystem II reaction center protein C)

HSP 1 Score: 221.5 bits (563), Expect = 9.000e-58
Identity = 106/109 (97.25%), Postives = 106/109 (97.25%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTL LAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
The following BLAST results are available for this feature:
BLAST of Spo17010.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|11497521|ref|NP_054929.1|6.7e-5598.1photosystem II 44 kDa protein ... [more]
gi|817528716|ref|YP_009136597.1|6.7e-5598.1photosystem II CP43 protein (p... [more]
gi|33328112|gb|AAQ09501.1|6.7e-5598.1photosystem II cp43 protein, p... [more]
gi|1020267080|gb|AMZ03431.1|6.7e-5598.1photosystem II CP43 protein (c... [more]
gi|372000485|gb|AEX65319.1|6.7e-5598.1photosystem II protein CP43, p... [more]
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BLAST of Spo17010.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
H2FAK5_ASPOF4.7e-5598.1Photosystem II CP43 reaction c... [more]
H2BBT1_MOLVE4.7e-5598.1Photosystem II CP43 reaction c... [more]
H6T036_ASPOF4.7e-5598.1Photosystem II CP43 reaction c... [more]
A0A159ZR97_9CARY4.7e-5598.1Photosystem II CP43 protein OS... [more]
K4KK62_VIOPU4.7e-5598.1Photosystem II CP43 reaction c... [more]
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BLAST of Spo17010.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBC_SPIOL4.2e-5798.1Photosystem II CP43 reaction c... [more]
PSBC_CRYJA7.1e-5796.3Photosystem II CP43 reaction c... [more]
PSBC_WELMI1.2e-5694.5Photosystem II CP43 reaction c... [more]
PSBC_MANES1.2e-5697.2Photosystem II CP43 reaction c... [more]
PSBC_CERDE1.2e-5697.2Photosystem II CP43 reaction c... [more]
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BLAST of Spo17010.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
ATCG00280.19.0e-5897.2photosystem II reaction center... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 91..185
score: 3.4E-37coord: 32..70
score: 1.
IPR000932Photosystem antenna protein-likeunknownSSF161077Photosystem II antenna protein-likecoord: 32..75
score: 5.62E-14coord: 88..185
score: 6.93
NoneNo IPR availablePANTHERPTHR33180FAMILY NOT NAMEDcoord: 91..185
score: 9.2
NoneNo IPR availablePANTHERPTHR33180:SF4PHOTOSYSTEM II CP43 CHLOROPHYLL APOPROTEINcoord: 91..185
score: 9.2

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0016020 membrane
cellular_component GO:0009521 photosystem
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0030076 light-harvesting complex
cellular_component GO:0009523 photosystem II
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0046872 metal ion binding