Spo17109.1 (mRNA) | SpinachBase

Overview


Name	Spo17109.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	40S ribosomal protein S19
Location	chr1 : 8910958 .. 8914022 (+)
Sequence length	1337

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAAGGCGGGTGATAGACTTTTTGCCAGGATCCGGCCTGATCCATATGATACCATAAGGTCCATAGCAAAACCCAATGAATGTGTCTTATTTAAAAACCCAAAACAAAACCCTAAAATCGACTCCTTTGCCAACAACATTCGCCCCCTCACTTCTTCTGCAGCAGCTGAGAGAGAGAAAGAGAGAACAACAATGGAGGGTGGGAAAACAGTGAAAGATGTGTCTCCTCACGATTTCGTCAAAGCTTATGCTGCTCATCTTAAGCGCTCCGGCAAGGTTTCCCTCTTTCTCTTTTATCTTTTCGATTTCATGTTTTGTGATTGAATGATGTTAATATTGTACTTTATGATTAGGTTTTTGTTTGGGCATGTATATTTGCACATCACTTATTTTTACGAATTTTCCCCATTTTTTTTGTCATTAAGATTTTAGGGTTTCTATAGATTTATGTTTGACAAATTTGAATTTTTTAATCGAGTTTTCTGCCCTTTTTAGTGTTAGTAGCTGCAGTTTGAACTAGTTTGGATTAAACTGAGTGACAATGGGATGGAAATGGGTATTGTGCTGTAGAGTGAAGTTTAGAAAATCTAATTTCTGTAGTTTAGACCTAACACTTGGATAAAATAAGGGGGCGGCGGTGCTTTAATGAAGGCCAGTTTATTGATTTTCGTTGCTGTTTTCTTTCTTGATCTAATACGATAGAATGGCAAAAGATAATATTGCTAATTAGATGACTTTATTTGCAATTCAATTAAGGCAGAATTCATGATTTTGGTTAATGCATCTATTTGTTGGTCTTTTATTAAAGAAATAGTATGAGATGCTTGTGTTGTTTGTGTGTTTGGCCCTATTAACAATTGTAGACAAGAGAAGGGAGAATTATTGATTTTGGTTAGTGCATCTTTTTGTTGATCTTATATGTAAGAGTGATAAAGATGTTAGTTTTGTTTATGAGATGGCCCTAGTTGCAAGCTTTGACCCGAAGCTAGATTTTGATTTACCGTTTATTTGTTCTGCTATGTGCTCTGTAGATGGAGTTGCCTCACTGGACTGACATTGTCAAGACTGGTAAGCTCAAGGAACTCGCTCCATACGACCCTGACTGGTATTACACCAGAGCTGGTAAGTGCAGATTTTTCCTGGAAAGCTTTATTTGCTTGTCCACTTTAGTAATAAACTTTGTTGAATCTATGGTTCCTTTCTGTTTCATCTTTGCATATTTTTGTCAAGCAAACGTAGATTTTTGTCAGTTTCTTGGATAGGCTATTGTAGCACTAAAGGTTGGGGTTTTTTTTTTTTTTTAAACTTTTTTTTGTTTATGTGATAATTTTGTTGATCACTGTTACTTGTTCATTTCTAGTAAAGAGATGGCATTATAATAATGAATGTATATCTTTTTATTGTGTTTCTTTGTGAATGGATATCTTAATAAAGAAAACAAGGGGAGATAGTGACTGGATGGATTTCTTTGTATTCAGATTTTGACACAAAATCCTTATTTAAAGATTTCATGGTGCATTTAGGTCTTCATGTTCGAATTTCTATTCTATGGGGTTGCACATAGTTTCAAAAGCTTATTTTTCTGCTTGTAAGTGATGAAAATCGTCGAGTTATGAGAGTATGATAGCCTGAGAGGTGTTGTGAAGTAGTAGGTTGTGAGTATCTTGTAGTACTGTGGTAGTAGATTATTTTTGATGTTGGGCTTTGTGGTTTTGTCGACTATTGAAGATATTCCAGGTTAAGTGAAAATTGCTTTCACCCTGCTTTTCGTTTCCTCTTAAACTACCTGAAAAATCTATGGGTTAGTGCAATAGGATTGTGTAATGCTGTGCATGCTATTTCTCACATCTGCTTGAACTTTGGATTGTACTTTTGTCTGTTTTTCGGTAGTTGATTAATGTTCATTCCTTTTGGCAGCTTCTATGGCAAGGAAGATCTACTTGAGGGGTGGACTTGGAGTTGGTGGCTTTAGGAGGATTTATGGAGGAAACCAGAGAAATGGTAGTCGCCCTCGTCACTTCTGCAAGAGCAGTGGTTCTGTTGCCCGTCACATTTTGCAGCAATTAGAGGCAGTGAAAATTGTTGAAATTGATCCTAAAGGGTAAGCACCAAGGCCTTTAATTTGCATTGCCAGTTGTTATACAATCACTTGTTATCGCTGCCTTTATTTTGAACTCCGATATTCACAACAAGGAGCTTAATGAGCCAGTGTTTCTAGCTCGCAATGGGTAGTAATGTGTTGAAGAGTCTACTGACATTTGCATGTATGTTGTATTCAGGGGAAGGAAGATCACATCAAGCGGCCAACGAGATCTTGACCAAGTTGCTGGCAGAATTGGTGTTGAGGTGTAAGAATGCTGGTTTGCATCAGTCATTCGTTATAAGTCTAATGAAAACTAGTCGTAGAGGAACGTAAATCAAATTTCATCTTTTTGTGGCCTGTGTTGAATTTTGTTAGTTTTGCGATGATGTGCTAGTTGTCGGAGATTATTTTCGCTACGGACACACATGGTTATGAATCTTAATTTTATGAAATACATCTACTTGATTTCTGTCTTTGTTGTGGCTTTTGTTTGTTGAACTTGTAACCATGCCAGTCTCTATGATAGTAGCCGCAGTGGTGGGAAATTGGTTCATGTGACTGACAGACAACCCTCATCTTCATGATCAACAATTGCATGTTTGCAATGCGGAGAGAATGACAGTGAATGTGAAAATAGTGTCTTTTGCCTGAAACTCAGCTCCAGAATCACTCTAGTTTGGTTGACACTGTGTGGAGTTGATACATGGGAAGTTTAATTTCCTAGGAAGTGAACAGCAAAGAAGGCTGTCAAAAAAAAAAGAACAGCAAAGAAGTTGTTTGGTTGTCATGTGCACAGAAAGTGAACTTCTTAGGAATTTCTACTTCCCAAAAAGGGGAAGTTGCTTTTCATGGGAATTCTAATTGTCTATGTTTAACCAAACAAGAATACTCAATTCATAGGAAGTTAAAATTTACGGGAATTGTATTAATTTACGGGAATTGCAAATACAAGGAAAATTTAACTTTCCAAGTACCACCA

mRNA sequence

ATGAACAAGGCGGGTGATAGACTTTTTGCCAGGATCCGGCCTGATCCATATGATACCATAAGGTCCATAGCAAAACCCAATGAATGTGTCTTATTTAAAAACCCAAAACAAAACCCTAAAATCGACTCCTTTGCCAACAACATTCGCCCCCTCACTTCTTCTGCAGCAGCTGAGAGAGAGAAAGAGAGAACAACAATGGAGGGTGGGAAAACAGTGAAAGATGTGTCTCCTCACGATTTCGTCAAAGCTTATGCTGCTCATCTTAAGCGCTCCGGCAAGATGGAGTTGCCTCACTGGACTGACATTGTCAAGACTGGTAAGCTCAAGGAACTCGCTCCATACGACCCTGACTGGTATTACACCAGAGCTGCTTCTATGGCAAGGAAGATCTACTTGAGGGGTGGACTTGGAGTTGGTGGCTTTAGGAGGATTTATGGAGGAAACCAGAGAAATGGTAGTCGCCCTCGTCACTTCTGCAAGAGCAGTGGTTCTGTTGCCCGTCACATTTTGCAGCAATTAGAGGCAGTGAAAATTGTTGAAATTGATCCTAAAGGGGGAAGGAAGATCACATCAAGCGGCCAACGAGATCTTGACCAAGTTGCTGGCAGAATTGGTGTTGAGGTGTAAGAATGCTGGTTTGCATCAGTCATTCGTTATAAGTCTAATGAAAACTAGTCGTAGAGGAACGTAAATCAAATTTCATCTTTTTGTGGCCTGTGTTGAATTTTGTTAGTTTTGCGATGATGTGCTAGTTGTCGGAGATTATTTTCGCTACGGACACACATGGTTATGAATCTTAATTTTATGAAATACATCTACTTGATTTCTGTCTTTGTTGTGGCTTTTGTTTGTTGAACTTGTAACCATGCCAGTCTCTATGATAGTAGCCGCAGTGGTGGGAAATTGGTTCATGTGACTGACAGACAACCCTCATCTTCATGATCAACAATTGCATGTTTGCAATGCGGAGAGAATGACAGTGAATGTGAAAATAGTGTCTTTTGCCTGAAACTCAGCTCCAGAATCACTCTAGTTTGGTTGACACTGTGTGGAGTTGATACATGGGAAGTTTAATTTCCTAGGAAGTGAACAGCAAAGAAGGCTGTCAAAAAAAAAAGAACAGCAAAGAAGTTGTTTGGTTGTCATGTGCACAGAAAGTGAACTTCTTAGGAATTTCTACTTCCCAAAAAGGGGAAGTTGCTTTTCATGGGAATTCTAATTGTCTATGTTTAACCAAACAAGAATACTCAATTCATAGGAAGTTAAAATTTACGGGAATTGTATTAATTTACGGGAATTGCAAATACAAGGAAAATTTAACTTTCCAAGTACCACCA

Coding sequence (CDS)

ATGAACAAGGCGGGTGATAGACTTTTTGCCAGGATCCGGCCTGATCCATATGATACCATAAGGTCCATAGCAAAACCCAATGAATGTGTCTTATTTAAAAACCCAAAACAAAACCCTAAAATCGACTCCTTTGCCAACAACATTCGCCCCCTCACTTCTTCTGCAGCAGCTGAGAGAGAGAAAGAGAGAACAACAATGGAGGGTGGGAAAACAGTGAAAGATGTGTCTCCTCACGATTTCGTCAAAGCTTATGCTGCTCATCTTAAGCGCTCCGGCAAGATGGAGTTGCCTCACTGGACTGACATTGTCAAGACTGGTAAGCTCAAGGAACTCGCTCCATACGACCCTGACTGGTATTACACCAGAGCTGCTTCTATGGCAAGGAAGATCTACTTGAGGGGTGGACTTGGAGTTGGTGGCTTTAGGAGGATTTATGGAGGAAACCAGAGAAATGGTAGTCGCCCTCGTCACTTCTGCAAGAGCAGTGGTTCTGTTGCCCGTCACATTTTGCAGCAATTAGAGGCAGTGAAAATTGTTGAAATTGATCCTAAAGGGGGAAGGAAGATCACATCAAGCGGCCAACGAGATCTTGACCAAGTTGCTGGCAGAATTGGTGTTGAGGTGTAA

Protein sequence

MNKAGDRLFARIRPDPYDTIRSIAKPNECVLFKNPKQNPKIDSFANNIRPLTSSAAAEREKERTTMEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAASMARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKGGRKITSSGQRDLDQVAGRIGVEV

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo17109	Spo17109	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo17109.1	Spo17109.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17109.1.exon.1	Spo17109.1.exon.1	exon
Spo17109.1.exon.2	Spo17109.1.exon.2	exon
Spo17109.1.exon.3	Spo17109.1.exon.3	exon
Spo17109.1.exon.4	Spo17109.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17109.1.CDS.1	Spo17109.1.CDS.1	CDS
Spo17109.1.CDS.2	Spo17109.1.CDS.2	CDS
Spo17109.1.CDS.3	Spo17109.1.CDS.3	CDS
Spo17109.1.CDS.4	Spo17109.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17109.1.utr3p.1	Spo17109.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo17109.1 vs. NCBI nr
Match: gi|902175838|gb|KNA08672.1| (hypothetical protein SOVF_160510 [Spinacia oleracea])

HSP 1 Score: 295.4 bits (755), Expect = 7.600e-77
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1

		  
Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS
Sbjct: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG
Sbjct: 61  MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVEV 209
           GRKITSSGQRDLDQVAGRIGVEV
Sbjct: 121 GRKITSSGQRDLDQVAGRIGVEV 143

[Close]

BLAST of Spo17109.1 vs. NCBI nr
Match: gi|902212504|gb|KNA16999.1| (hypothetical protein SOVF_083970 [Spinacia oleracea])

HSP 1 Score: 280.4 bits (716), Expect = 2.500e-72
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 1

		  
Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYD DWYY RAAS
Sbjct: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARK+YLRGGLGVGGFRRIYGG++RNGSRP HFCKSSG+VARHILQQLE VKIVEIDPKG
Sbjct: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPPHFCKSSGAVARHILQQLEQVKIVEIDPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVEV 209
           GRKITSSGQRDLDQVAGRIGVEV
Sbjct: 121 GRKITSSGQRDLDQVAGRIGVEV 143

[Close]

BLAST of Spo17109.1 vs. NCBI nr
Match: gi|731334810|ref|XP_010678410.1| (PREDICTED: 40S ribosomal protein S19-1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 261.2 bits (666), Expect = 1.600e-66
Identity = 126/141 (89.36%), Postives = 133/141 (94.33%), Query Frame = 1

		  
Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           M   +TVKDVSPHDFVK+YA+HLKRSGKMELP WTDIVKTGKLK+LAPYDPDWYY RAAS
Sbjct: 1   MAPSRTVKDVSPHDFVKSYASHLKRSGKMELPQWTDIVKTGKLKQLAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGGLGVGGFRRIYGG++RNGSRP HFCKSSGSVARHILQQLE+VKIVEIDPKG
Sbjct: 61  MARKIYLRGGLGVGGFRRIYGGSKRNGSRPPHFCKSSGSVARHILQQLESVKIVEIDPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGV 207
           GRKITSSGQRDLDQVA  IGV
Sbjct: 121 GRKITSSGQRDLDQVACTIGV 141

[Close]

BLAST of Spo17109.1 vs. NCBI nr
Match: gi|460413795|ref|XP_004252264.1| (PREDICTED: 40S ribosomal protein S19-3 [Solanum lycopersicum])

HSP 1 Score: 260.8 bits (665), Expect = 2.100e-66
Identity = 123/141 (87.23%), Postives = 132/141 (93.62%), Query Frame = 1

		  
Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           ME  ++VKDVSPHDFVKAYAAHLKRSGKMELP WTDIVKTGKLKELAPYD DWYY RAAS
Sbjct: 1   MEAARSVKDVSPHDFVKAYAAHLKRSGKMELPEWTDIVKTGKLKELAPYDADWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGG+GVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQL+ + I++ +PKG
Sbjct: 61  MARKIYLRGGIGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLQNMNIIDFEPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGV 207
           GR+ITSSGQRDLDQVAGRI V
Sbjct: 121 GRRITSSGQRDLDQVAGRIAV 141

[Close]

BLAST of Spo17109.1 vs. NCBI nr
Match: gi|697152085|ref|XP_009630276.1| (PREDICTED: 40S ribosomal protein S19-3-like [Nicotiana tomentosiformis])

HSP 1 Score: 260.4 bits (664), Expect = 2.700e-66
Identity = 123/143 (86.01%), Postives = 133/143 (93.01%), Query Frame = 1

		  
Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           ME  + VKDVSPH+FVKAYAAHLKRSGKMELP WTDIVKTGKLKELAPYDPDWYY RAAS
Sbjct: 1   MEPARNVKDVSPHEFVKAYAAHLKRSGKMELPEWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVAR+ILQQL+ + I++ DPKG
Sbjct: 61  MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARNILQQLQNMNIIDFDPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVEV 209
           GR+ITS+GQRDLDQVAGRI V +
Sbjct: 121 GRRITSNGQRDLDQVAGRIAVAI 143

[Close]

BLAST of Spo17109.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QN50_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_160510 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 5.300e-77
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1

		  
Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS
Sbjct: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG
Sbjct: 61  MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVEV 209
           GRKITSSGQRDLDQVAGRIGVEV
Sbjct: 121 GRKITSSGQRDLDQVAGRIGVEV 143

[Close]

BLAST of Spo17109.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RDC9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_083970 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.800e-72
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 1

		  
Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYD DWYY RAAS
Sbjct: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARK+YLRGGLGVGGFRRIYGG++RNGSRP HFCKSSG+VARHILQQLE VKIVEIDPKG
Sbjct: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPPHFCKSSGAVARHILQQLEQVKIVEIDPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVEV 209
           GRKITSSGQRDLDQVAGRIGVEV
Sbjct: 121 GRKITSSGQRDLDQVAGRIGVEV 143

[Close]

BLAST of Spo17109.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CAT1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g113800 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.100e-66
Identity = 126/141 (89.36%), Postives = 133/141 (94.33%), Query Frame = 1

		  
Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           M   +TVKDVSPHDFVK+YA+HLKRSGKMELP WTDIVKTGKLK+LAPYDPDWYY RAAS
Sbjct: 1   MAPSRTVKDVSPHDFVKSYASHLKRSGKMELPQWTDIVKTGKLKQLAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGGLGVGGFRRIYGG++RNGSRP HFCKSSGSVARHILQQLE+VKIVEIDPKG
Sbjct: 61  MARKIYLRGGLGVGGFRRIYGGSKRNGSRPPHFCKSSGSVARHILQQLESVKIVEIDPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGV 207
           GRKITSSGQRDLDQVA  IGV
Sbjct: 121 GRKITSSGQRDLDQVACTIGV 141

[Close]

BLAST of Spo17109.1 vs. UniProtKB/TrEMBL
Match: M1BB68_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015992 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.400e-66
Identity = 123/141 (87.23%), Postives = 132/141 (93.62%), Query Frame = 1

		  
Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           ME  ++VKDVSPHDFVKAYAAHLKRSGKMELP WTDIVKTGKLKELAPYD DWYY RAAS
Sbjct: 1   MEAARSVKDVSPHDFVKAYAAHLKRSGKMELPEWTDIVKTGKLKELAPYDADWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGG+GVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQL+ + I++ +PKG
Sbjct: 61  MARKIYLRGGIGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLQNMNIIDFEPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGV 207
           GR+ITSSGQRDLDQVAGRI V
Sbjct: 121 GRRITSSGQRDLDQVAGRIAV 141

[Close]

BLAST of Spo17109.1 vs. UniProtKB/TrEMBL
Match: K4DEQ8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.400e-66
Identity = 123/141 (87.23%), Postives = 132/141 (93.62%), Query Frame = 1

		  
Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           ME  ++VKDVSPHDFVKAYAAHLKRSGKMELP WTDIVKTGKLKELAPYD DWYY RAAS
Sbjct: 1   MEAARSVKDVSPHDFVKAYAAHLKRSGKMELPEWTDIVKTGKLKELAPYDADWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGG+GVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQL+ + I++ +PKG
Sbjct: 61  MARKIYLRGGIGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLQNMNIIDFEPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGV 207
           GR+ITSSGQRDLDQVAGRI V
Sbjct: 121 GRRITSSGQRDLDQVAGRIAV 141

[Close]

BLAST of Spo17109.1 vs. ExPASy Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.900e-67
Identity = 122/142 (85.92%), Postives = 131/142 (92.25%), Query Frame = 1

		  
Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTGKLKELAPYDPDWYY RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARK+YLRGGLGVG FRRIYGG++RNGSRP HFCKSSG +ARHILQQLE + IVE+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVE 208
           GR+ITSSGQRDLDQVAGRI VE
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVE 142

[Close]

BLAST of Spo17109.1 vs. ExPASy Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.200e-66
Identity = 121/142 (85.21%), Postives = 130/142 (91.55%), Query Frame = 1

		  
Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTG+LKELAPYDPDWYY RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGGLGVG FRRIYGG++RNGSRP HFCKSSG +ARHILQQLE + IVE+D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVE 208
           GR+ITSSGQRDLDQVAGRI  E
Sbjct: 121 GRRITSSGQRDLDQVAGRIAAE 142

[Close]

BLAST of Spo17109.1 vs. ExPASy Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.700e-66
Identity = 121/143 (84.62%), Postives = 130/143 (90.91%), Query Frame = 1

		  
Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           M  GKTVKDVSPH+FVKAYAAHLKRSGK+ELP WTDIVKTGKLKELAPYDPDWYY RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARK+YLRGGLGVG FRRIYGG++RNGSRP HFCKSSG VARHILQQL+ + IV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVEV 209
           GRKITSSGQRDLDQVAGRI   V
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAAV 143

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BLAST of Spo17109.1 vs. ExPASy Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=2 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.100e-59
Identity = 104/139 (74.82%), Postives = 125/139 (89.93%), Query Frame = 1

		  
Query: 70  KTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAASMARK 129
           +TVKDV+PH+FVKAY+AHLKRSGKMELP W DIVKT + KEL PYDPDWYYTRAAS+ARK
Sbjct: 7   RTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARK 66

Query: 130 IYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKGGRKI 189
           IYLR G+GVGGF++IYGG QRNGSRP HFCKSSG+++R+ILQQL+ + I+++DPKGGR I
Sbjct: 67  IYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLI 126

Query: 190 TSSGQRDLDQVAGRIGVEV 209
           TS G+RDLDQVAGR+ V +
Sbjct: 127 TSQGRRDLDQVAGRVDVTI 145

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BLAST of Spo17109.1 vs. ExPASy Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.400e-46
Identity = 80/136 (58.82%), Postives = 109/136 (80.15%), Query Frame = 1

		  
Query: 69  GKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAASMAR 128
           G +VKDVS H+F +A+AA LK+SGKM++P WTD VKTG  KEL+PY+PDWY+ RAAS+ R
Sbjct: 2   GISVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICR 61

Query: 129 KIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKGGRK 188
            +Y+R   G+G F +IYGG +R G+ P HFCK++GS++R +LQ LE +KIVE DP GGR+
Sbjct: 62  HLYIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRR 121

Query: 189 ITSSGQRDLDQVAGRI 205
           +TS G+RDLD++A +I
Sbjct: 122 LTSQGRRDLDRIAAQI 137

[Close]

BLAST of Spo17109.1 vs. TAIR (Arabidopsis)
Match: AT3G02080.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 256.9 bits (655), Expect = 1.100e-68
Identity = 122/142 (85.92%), Postives = 131/142 (92.25%), Query Frame = 1

		  
Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTGKLKELAPYDPDWYY RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARK+YLRGGLGVG FRRIYGG++RNGSRP HFCKSSG +ARHILQQLE + IVE+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVE 208
           GR+ITSSGQRDLDQVAGRI VE
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVE 142

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BLAST of Spo17109.1 vs. TAIR (Arabidopsis)
Match: AT5G15520.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 254.2 bits (648), Expect = 6.900e-68
Identity = 121/142 (85.21%), Postives = 130/142 (91.55%), Query Frame = 1

		  
Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTG+LKELAPYDPDWYY RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGGLGVG FRRIYGG++RNGSRP HFCKSSG +ARHILQQLE + IVE+D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVE 208
           GR+ITSSGQRDLDQVAGRI  E
Sbjct: 121 GRRITSSGQRDLDQVAGRIAAE 142

[Close]

BLAST of Spo17109.1 vs. TAIR (Arabidopsis)
Match: AT5G61170.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 253.1 bits (645), Expect = 1.500e-67
Identity = 121/143 (84.62%), Postives = 130/143 (90.91%), Query Frame = 1

		  
Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           M  GKTVKDVSPH+FVKAYAAHLKRSGK+ELP WTDIVKTGKLKELAPYDPDWYY RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARK+YLRGGLGVG FRRIYGG++RNGSRP HFCKSSG VARHILQQL+ + IV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVEV 209
           GRKITSSGQRDLDQVAGRI   V
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAAV 143

The following BLAST results are available for this feature:

BLAST of Spo17109.1 vs. NCBI nr
BLAST of Spo17109.1 vs. UniProtKB/TrEMBL
BLAST of Spo17109.1 vs. ExPASy Swiss-Prot
BLAST of Spo17109.1 vs. TAIR (Arabidopsis)

BLAST of Spo17109.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902175838\|gb\|KNA08672.1\|	7.6e-77	100.	hypothetical protein SOVF_1605...	[more]
gi\|902212504\|gb\|KNA16999.1\|	2.5e-72	94.4	hypothetical protein SOVF_0839...	[more]
gi\|731334810\|ref\|XP_010678410.1\|	1.6e-66	89.3	PREDICTED: 40S ribosomal prote...	[more]
gi\|460413795\|ref\|XP_004252264.1\|	2.1e-66	87.2	PREDICTED: 40S ribosomal prote...	[more]
gi\|697152085\|ref\|XP_009630276.1\|	2.7e-66	86.0	PREDICTED: 40S ribosomal prote...	[more]

BLAST of Spo17109.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9QN50_SPIOL	5.3e-77	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9RDC9_SPIOL	1.8e-72	94.4	Uncharacterized protein OS=Spi...	[more]
A0A0J8CAT1_BETVU	1.1e-66	89.3	Uncharacterized protein OS=Bet...	[more]
M1BB68_SOLTU	1.4e-66	87.2	Uncharacterized protein OS=Sol...	[more]
K4DEQ8_SOLLC	1.4e-66	87.2	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo17109.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RS191_ARATH	1.9e-67	85.9	40S ribosomal protein S19-1 OS...	[more]
RS192_ARATH	1.2e-66	85.2	40S ribosomal protein S19-2 OS...	[more]
RS193_ARATH	2.7e-66	84.6	40S ribosomal protein S19-3 OS...	[more]
RS19_ORYSJ	1.1e-59	74.8	40S ribosomal protein S19 OS=O...	[more]
RS19_MYAAR	2.4e-46	58.8	40S ribosomal protein S19 OS=M...	[more]

BLAST of Spo17109.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3

Position :

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Match Name	E-value	Identity	Description
AT3G02080.1	1.1e-68	85.9	Ribosomal protein S19e family ...	[more]
AT5G15520.1	6.9e-68	85.2	Ribosomal protein S19e family ...	[more]
AT5G61170.1	1.5e-67	84.6	Ribosomal protein S19e family ...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001266	Ribosomal protein S19e	PRODOM	PD003854		coord: 69..185 score: 3.0
IPR001266	Ribosomal protein S19e	PANTHER	PTHR11710	40S RIBOSOMAL PROTEIN S19	coord: 63..208 score: 5.4
IPR001266	Ribosomal protein S19e	PFAM	PF01090	Ribosomal_S19e	coord: 71..204 score: 1.4
IPR001266	Ribosomal protein S19e	SMART	SM01413	Ribosomal_S19e_2	coord: 71..207 score: 1.1
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 163..204 score: 1.
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 71..206 score: 2.31
IPR018277	Ribosomal protein S19e, conserved site	PROSITE	PS00628	RIBOSOMAL_S19E	coord: 155..174 scor

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005618	cell wall
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0003735	structural constituent of ribosome