Spo17218.1 (mRNA)

Overview
NameSpo17218.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionGalactosyltransferase family protein
LocationSpoScf_74529 : 32 .. 280 (-)
Sequence length249
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCCGCAAGAATAGCAAGGATAGCAATAGAAGTAGCACCACCACAATTTGTCAACATCATCAAATTTAGACGTGCTTCAAGCAACGTTGTTGCCTTAGATACAATCTATGAAGATCAAGAGAAAGATATGAGCAATCTCAATTCCATAACCTCCTTAAGTTTGAAAAGTTATGGCAATAATAATATTATTAATAATGCCTCATCGTCATCAATTATGTCCAAGTACTTTTCTCCAAGAACCTAA

mRNA sequence

ATGGCATCCGCAAGAATAGCAAGGATAGCAATAGAAGTAGCACCACCACAATTTGTCAACATCATCAAATTTAGACGTGCTTCAAGCAACGTTGTTGCCTTAGATACAATCTATGAAGATCAAGAGAAAGATATGAGCAATCTCAATTCCATAACCTCCTTAAGTTTGAAAAGTTATGGCAATAATAATATTATTAATAATGCCTCATCGTCATCAATTATGTCCAAGTACTTTTCTCCAAGAACCTAA

Coding sequence (CDS)

ATGGCATCCGCAAGAATAGCAAGGATAGCAATAGAAGTAGCACCACCACAATTTGTCAACATCATCAAATTTAGACGTGCTTCAAGCAACGTTGTTGCCTTAGATACAATCTATGAAGATCAAGAGAAAGATATGAGCAATCTCAATTCCATAACCTCCTTAAGTTTGAAAAGTTATGGCAATAATAATATTATTAATAATGCCTCATCGTCATCAATTATGTCCAAGTACTTTTCTCCAAGAACCTAA

Protein sequence

MASARIARIAIEVAPPQFVNIIKFRRASSNVVALDTIYEDQEKDMSNLNSITSLSLKSYGNNNIINNASSSSIMSKYFSPRT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo17218Spo17218gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo17218.1Spo17218.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17218.1.CDS.1Spo17218.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17218.1.exon.1Spo17218.1.exon.1exon


Homology
[Close]
BLAST of Spo17218.1 vs. NCBI nr
Match: gi|902085447|gb|KNA03190.1| (hypothetical protein SOVF_211580 [Spinacia oleracea])

HSP 1 Score: 144.4 bits (363), Expect = 8.600e-32
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 1 

		  

Query: 1  MASARIARIAIEVAPPQFVNIIKFRRASSNVVALDTIYEDQEKDMSNLNSITSLSLKSYG 60
          MASARIARIAIE+APPQFVNIIKFRRASSNVVALDTIYEDQEKDMSNLNS+TSLSLKSYG
Sbjct: 1  MASARIARIAIEIAPPQFVNIIKFRRASSNVVALDTIYEDQEKDMSNLNSMTSLSLKSYG 60

Query: 61 NNNIINNASSSSIMSKYFSPRT 83
          NNNI NNASSSSIMSKYFSPR+
Sbjct: 61 NNNINNNASSSSIMSKYFSPRS 82
[Close]
BLAST of Spo17218.1 vs. NCBI nr
Match: gi|870851624|gb|KMT03656.1| (hypothetical protein BVRB_8g189950 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 94.7 bits (234), Expect = 7.800e-17
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = 1 

		  

Query: 1  MASARIARIAIEVAPPQFVNIIKFRRASSNVVALDTIYEDQEKDMSNLNSITSLSLKSYG 60
          MAS+R+ARIAIEVAPPQFVNI+KFRR S+   ALDTIYEDQEK+M+N NS  S +LK++ 
Sbjct: 1  MASSRVARIAIEVAPPQFVNIMKFRRTSNK--ALDTIYEDQEKEMNNSNSFISSNLKNH- 60

Query: 61 NNNIINNASSSSIMSKYFSPR 82
               +N +SSSIMSKYFSPR
Sbjct: 61 -----SNIASSSIMSKYFSPR 73
[Close]
BLAST of Spo17218.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7H9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_211580 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.000e-32
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 1 

		  

Query: 1  MASARIARIAIEVAPPQFVNIIKFRRASSNVVALDTIYEDQEKDMSNLNSITSLSLKSYG 60
          MASARIARIAIE+APPQFVNIIKFRRASSNVVALDTIYEDQEKDMSNLNS+TSLSLKSYG
Sbjct: 1  MASARIARIAIEIAPPQFVNIIKFRRASSNVVALDTIYEDQEKDMSNLNSMTSLSLKSYG 60

Query: 61 NNNIINNASSSSIMSKYFSPRT 83
          NNNI NNASSSSIMSKYFSPR+
Sbjct: 61 NNNINNNASSSSIMSKYFSPRS 82
[Close]
BLAST of Spo17218.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EL23_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g189950 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.400e-17
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = 1 

		  

Query: 1  MASARIARIAIEVAPPQFVNIIKFRRASSNVVALDTIYEDQEKDMSNLNSITSLSLKSYG 60
          MAS+R+ARIAIEVAPPQFVNI+KFRR S+   ALDTIYEDQEK+M+N NS  S +LK++ 
Sbjct: 1  MASSRVARIAIEVAPPQFVNIMKFRRTSNK--ALDTIYEDQEKEMNNSNSFISSNLKNH- 60

Query: 61 NNNIINNASSSSIMSKYFSPR 82
               +N +SSSIMSKYFSPR
Sbjct: 61 -----SNIASSSIMSKYFSPR 73
The following BLAST results are available for this feature:
BLAST of Spo17218.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902085447|gb|KNA03190.1|8.6e-3295.1hypothetical protein SOVF_2115... [more]
gi|870851624|gb|KMT03656.1|7.8e-1767.9hypothetical protein BVRB_8g18... [more]
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BLAST of Spo17218.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9Q7H9_SPIOL6.0e-3295.1Uncharacterized protein OS=Spi... [more]
A0A0J8EL23_BETVU5.4e-1767.9Uncharacterized protein OS=Bet... [more]
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BLAST of Spo17218.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo17218.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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