Spo17373.1 (mRNA) | SpinachBase

Overview


Name	Spo17373.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	40S ribosomal protein S18
Location	SpoScf_00146 : 428841 .. 431691 (-)
Sequence length	372

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCAATTAAGGGTATTGGCCGTCGTTACGCCAACATTTGTTGCAAGAAGGCCGACATCGACATGAACAAAAGGTTTAATTTTTTTTCTCCAAAACTAATATTTTTAGCACAATATTCATCATTTTATTTATGGGGTTGATGTTTTTTTTATTAATTTTTTTTATAGAATGTTGAATGTAGAACATTACATGTCTATAAATAAAAAAAAAAGCAAAAAGAACATTAGATATCTGGGAATGTTATTATTTAGGATAATTCTTAATTTATACTGCTCGTTTATTGATGATTGTTTTTGGGTCTGTTGATTGCTCTTAATTTAGGAATCAATTTGCTGCATCTTGTATTTTAGCATAATTATTATGGAATTTTTTTGGGGTTTTGGAGTTTGTAGCTCTGCTACTTTATAATTTTTTGTTGTTTTAGAAAATTCAACATAATGTTTGTGATACGGAGTATTAATCATGCTTGATGCTTATTGTTACGGCTGTATGAACTTCGATTTTGTTGGTTAAATGATGTTGGGAGGTTAAGCCTGATGCTGTTTTTATTCATCTGTCTTTGTCAGAATAATGTAAATATACACAATGTGTCAAGTGTAATGTTATGATTACTGCCATTGAGTAGAATATTAGCTTTTAGATTTAGAATACTCAGAGCCTGATTGCAGAGGTAACAGAGTAGAATTGCTTCTTCTATTTCATTGTTAGTTTAGTTGGCTACAAGTCTGTTGATTTTAAATATCGTTGGCCTGGTTTATCACAGTTGTGTAGAGAAGCTTATTCAGGTTTTGAAGTTTTTGATGCCCAATTTTTGTCGAATTTGGGCATTTGGTCATTGTCTTGGTTTGAACTTCTGTCTCTGGACGTGTTGTTCCACTGTAGATTGTAGAAGTTGGATTTTTCACTATGCTATCTCAAATCCTTGGTGTATAGCCCTTGCCTAATTCTTCCGTTGCAACAATCCTGTTTTGCTCTGCATTGTTTTTGTGTATCGGTTATCAAAGGGTTTTTTAATTAATGAAGTTGAAGTTTATTTTCATCATTAAGCTGTCTACAAATCAATGCGCATCATCCTTCTAACATTGCTTCGAGCAATAATTCTCTGGAAGGGAAAAACGACTATTTCTCTTCATTTTTAGTCTACCTTCCTCATTATTTGTTTTATATGGATAGGTACTACAAATTGACTGCCTCCCGAACCCTTAGAAATATTATGGGGTGACCTTACTTCTTCAAATAGTTAGCCATTGCTTAGTTTTAAAAGGCGCACTTAAAGCTCTGATAGCTCGGAAGTTCACAGAAGAACCCTTTTGCGCGCGCTTCCTTGCCCTTCTTTTTAATTAAAAAATAAAGCCACGTGACTCTAATCTTCTTTTTTTAAGTATCACGAGATTTTTTTTTTCTAAAAAAGCGAATATTTGGGGGTTTGAAAACCCTAGTGCAATTTTCTCCCGTAGCTGAATTTCTCTAGCCTTCTCGCCGGATTTCTCCGGTTGGATTCTGAATTTTTCTTTCATCTTTTCGATTTCTCTTTTTCTTGTCATCTTTTCTTTCCATATTTTCTCCTTCTTTTCTGAACTTTAAAATTTTTATTTTTTCTTTCCTGGTGCGCTTCGCCTGCGAAAAGCATGCGCTTTGCGCTTAAGCTCCCGGACCCTTTTGCGCTTCGGTGCGCTTCGCTCTTTTAAAACTAAGAGCCATTGTAGTGCCAGGAGGATGGGCAGCAAGTCAGCAATGCAAGTCTAGATTTTGGCTGTAATGGCTCTTCTTTAAAGAAGAGGGTTGTGGTTGTGCCGAATGTACCTTTTTAACTTGTTGGGTGACTCAGGCCTGTGATATTTGGTGCTGAGCAACAGTTTGTGGGTTCCTTATAGTCGAACTTCTGATTTATGGCCTTCAATTTTTCTTTGTAAAACCTCTTTTGTCCTAGTATAATACGTGTTTGTGCGCATTGAACAGGAATTTTCAGAGGCCAATCAAGAGCATAATTGTATAACTGATTCTGGTGTTTTGCATATGTATCTGTTTCATTGGGGTTTGTCTATTCTGTACTTCAGTACGTCAATTTAATAAGGCATAATAATTGACCGAATGAAGATAACTTTGAAACTTGCACTTTTAATCCTTTATGCTTATAGCATCCACTTATATGCGATGCTGAGAAATATTGGAGAGTTCATAGCAGTCAGAAATAGAGGTTCTTGTTGATAAAAAATGATGCGATGCTGAGAAATATTGGAGAGTTCATAGTAGTCAGAAATAGAGGTTCTTGTTGATGAAAAATGAGATATGGGGGTTCTTACTTCTTAGTGATATGAAATTAGACACTTCGAGTCCCCGAAGTATGCATATCTTTGCATACTATGAATGCATTAAATGGTTTCTGCTCTAGAACTTGTTTTTTTATGAATATCTTCCTGTGGTTTTCATATATAGAAGCTATCTCTAATCTGCAAACTTTGCTGCAGGGCTGGTGAACTGACAAATGCAGAGCTAGAAACTTTGATGACAGTTGTAGCAAATCCTAGGCAATTCAAAGTCCCAGACTGGTTTCTCAACAGACAGAAGGACTACAAGGATGGAAGATACAGTCAGGTTGTTTCTAACCAACTTGACATGAAACTCAGGGATGACCTTGAGCGTCTGAAGAAGATCAGGTGTGTTTTCTTTTACTGAATGCTTCATGTTACCATTGCTCTATGATACAAAATGCCTTTTTAACATTTTGAAAAACCTTGCAGAAACCACCGTGGTCTCCGTCACTACTGGGGTCTGAGAGTGCGTGGACAGCACACCAAGACTACTGGACGTAGGGGAAAGACTGTTGGTGTCTCCAAGAAGCGTTGA

mRNA sequence

ATGACTTCAATTAAGGGTATTGGCCGTCGTTACGCCAACATTTGTTGCAAGAAGGCCGACATCGACATGAACAAAAGGGCTGGTGAACTGACAAATGCAGAGCTAGAAACTTTGATGACAGTTGTAGCAAATCCTAGGCAATTCAAAGTCCCAGACTGGTTTCTCAACAGACAGAAGGACTACAAGGATGGAAGATACAGTCAGGTTGTTTCTAACCAACTTGACATGAAACTCAGGGATGACCTTGAGCGTCTGAAGAAGATCAGAAACCACCGTGGTCTCCGTCACTACTGGGGTCTGAGAGTGCGTGGACAGCACACCAAGACTACTGGACGTAGGGGAAAGACTGTTGGTGTCTCCAAGAAGCGTTGA

Coding sequence (CDS)

ATGACTTCAATTAAGGGTATTGGCCGTCGTTACGCCAACATTTGTTGCAAGAAGGCCGACATCGACATGAACAAAAGGGCTGGTGAACTGACAAATGCAGAGCTAGAAACTTTGATGACAGTTGTAGCAAATCCTAGGCAATTCAAAGTCCCAGACTGGTTTCTCAACAGACAGAAGGACTACAAGGATGGAAGATACAGTCAGGTTGTTTCTAACCAACTTGACATGAAACTCAGGGATGACCTTGAGCGTCTGAAGAAGATCAGAAACCACCGTGGTCTCCGTCACTACTGGGGTCTGAGAGTGCGTGGACAGCACACCAAGACTACTGGACGTAGGGGAAAGACTGTTGGTGTCTCCAAGAAGCGTTGA

Protein sequence

MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo17373	Spo17373	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo17373.1	Spo17373.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17373.1.CDS.3	Spo17373.1.CDS.3	CDS
Spo17373.1.CDS.2	Spo17373.1.CDS.2	CDS
Spo17373.1.CDS.1	Spo17373.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17373.1.exon.3	Spo17373.1.exon.3	exon
Spo17373.1.exon.2	Spo17373.1.exon.2	exon
Spo17373.1.exon.1	Spo17373.1.exon.1	exon

Homology

[Close]

BLAST of Spo17373.1 vs. NCBI nr
Match: gi|902221303|gb|KNA18890.1| (hypothetical protein SOVF_066930 [Spinacia oleracea])

HSP 1 Score: 251.1 bits (640), Expect = 9.700e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD
Sbjct: 30  MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152

[Close]

BLAST of Spo17373.1 vs. NCBI nr
Match: gi|731374327|ref|XP_010666932.1| (PREDICTED: 40S ribosomal protein S18 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 243.8 bits (621), Expect = 1.600e-61
Identity = 119/123 (96.75%), Postives = 121/123 (98.37%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRRYANICCKKADIDMNKRAGELT AEL+ LMTVVANPRQFKVPDWFLNRQKD
Sbjct: 30  MTSIKGIGRRYANICCKKADIDMNKRAGELTAAELDNLMTVVANPRQFKVPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDGRYSQV+SNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGRYSQVLSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152

[Close]

BLAST of Spo17373.1 vs. NCBI nr
Match: gi|731361198|ref|XP_010692226.1| (PREDICTED: 40S ribosomal protein S18-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 241.9 bits (616), Expect = 5.900e-61
Identity = 117/123 (95.12%), Postives = 121/123 (98.37%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRRYANICCKKADIDMNKRAGELT AEL+ LMTVVANPRQFK+PDWFLNRQKD
Sbjct: 30  MTSIKGIGRRYANICCKKADIDMNKRAGELTAAELDNLMTVVANPRQFKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDGR+SQV+SNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGRFSQVLSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152

[Close]

BLAST of Spo17373.1 vs. NCBI nr
Match: gi|922352409|ref|XP_013452021.1| (ribosomal protein S13P/S18e [Medicago truncatula])

HSP 1 Score: 239.2 bits (609), Expect = 3.800e-60
Identity = 115/123 (93.50%), Postives = 121/123 (98.37%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRR+ANICCKKAD+DMNKRAGELT AELE +MTVVANPRQFKVPDWFLNR+KD
Sbjct: 30  MTSIKGIGRRFANICCKKADVDMNKRAGELTAAELENIMTVVANPRQFKVPDWFLNRKKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDG++SQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152

[Close]

BLAST of Spo17373.1 vs. NCBI nr
Match: gi|217071380|gb|ACJ84050.1| (unknown [Medicago truncatula])

HSP 1 Score: 238.8 bits (608), Expect = 5.000e-60
Identity = 115/123 (93.50%), Postives = 121/123 (98.37%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRR+ANICCKKAD+DMNKRAGELT AELE +MTVVANPRQFKVPDWFLNR+KD
Sbjct: 30  MTSIKGIGRRFANICCKKADVDMNKRAGELTVAELENIMTVVANPRQFKVPDWFLNRKKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDG++SQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152

[Close]

BLAST of Spo17373.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHD4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_063420 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 6.800e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD
Sbjct: 30  MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152

[Close]

BLAST of Spo17373.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B411_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_005520 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.100e-61
Identity = 119/123 (96.75%), Postives = 121/123 (98.37%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRRYANICCKKADIDMNKRAGELT AEL+ LMTVVANPRQFKVPDWFLNRQKD
Sbjct: 30  MTSIKGIGRRYANICCKKADIDMNKRAGELTAAELDNLMTVVANPRQFKVPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDGRYSQV+SNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGRYSQVLSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152

[Close]

BLAST of Spo17373.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BJ24_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g019050 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.100e-61
Identity = 117/123 (95.12%), Postives = 121/123 (98.37%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRRYANICCKKADIDMNKRAGELT AEL+ LMTVVANPRQFK+PDWFLNRQKD
Sbjct: 30  MTSIKGIGRRYANICCKKADIDMNKRAGELTAAELDNLMTVVANPRQFKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDGR+SQV+SNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGRFSQVLSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152

[Close]

BLAST of Spo17373.1 vs. UniProtKB/TrEMBL
Match: G7IEW7_MEDTR (Ribosomal protein S13P/S18e OS=Medicago truncatula GN=MTR_6g043210 PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 2.700e-60
Identity = 115/123 (93.50%), Postives = 121/123 (98.37%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRR+ANICCKKAD+DMNKRAGELT AELE +MTVVANPRQFKVPDWFLNR+KD
Sbjct: 30  MTSIKGIGRRFANICCKKADVDMNKRAGELTAAELENIMTVVANPRQFKVPDWFLNRKKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDG++SQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152

[Close]

BLAST of Spo17373.1 vs. UniProtKB/TrEMBL
Match: B7FH21_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.500e-60
Identity = 115/123 (93.50%), Postives = 121/123 (98.37%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRR+ANICCKKAD+DMNKRAGELT AELE +MTVVANPRQFKVPDWFLNR+KD
Sbjct: 30  MTSIKGIGRRFANICCKKADVDMNKRAGELTVAELENIMTVVANPRQFKVPDWFLNRKKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDG++SQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152

[Close]

BLAST of Spo17373.1 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.500e-59
Identity = 110/123 (89.43%), Postives = 118/123 (95.93%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           +TSIKGIGRR ANI CKKAD+DMNKRAGEL+ AE++ LMT+VANPRQFK+PDWFLNRQKD
Sbjct: 30  LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDG+YSQVVSN LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152

[Close]

BLAST of Spo17373.1 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 5.900e-53
Identity = 96/123 (78.05%), Postives = 115/123 (93.50%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           +TSIKG+GRRY+NI CKKADID++KRAGEL++ E+E L+T++ NPRQ+K+PDWFLNRQKD
Sbjct: 30  LTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
            KDG+YSQV++N LD KLR+DLERLKKIR HRGLRHYWGLRVRGQHTKTTGRRG+TVGVS
Sbjct: 90  VKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVS 149

Query: 121 KKR 124
           KK+
Sbjct: 150 KKK 152

[Close]

BLAST of Spo17373.1 vs. ExPASy Swiss-Prot
Match: RS18_ARGIR (40S ribosomal protein S18 OS=Argopecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.100e-51
Identity = 93/123 (75.61%), Postives = 114/123 (92.68%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MT+IKG+GRRYAN+ CKKAD+D+ KRAGEL+  E+E ++T+++NPRQ+K+P+WFLNRQKD
Sbjct: 30  MTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
            KDG+YSQV+SN LD KLR+DLERLKKIR HRGLRHYWGLRVRGQHTKTTGRRG+TVGV+
Sbjct: 90  VKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVA 149

Query: 121 KKR 124
           KK+
Sbjct: 150 KKK 152

[Close]

BLAST of Spo17373.1 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.100e-50
Identity = 92/123 (74.80%), Postives = 113/123 (91.87%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           +T+IKG+GRRYA++  +KADID+NKRAGELT  E+E ++T++ NPRQ+K+PDWFLNRQKD
Sbjct: 30  ITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
            KDG+YSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTTGRRG+TVGVS
Sbjct: 90  IKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVS 149

Query: 121 KKR 124
           KK+
Sbjct: 150 KKK 152

[Close]

BLAST of Spo17373.1 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 6.100e-50
Identity = 91/123 (73.98%), Postives = 111/123 (90.24%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MT+IKG+GRRY+NI  KKADID++KRAGE T  E+E ++T+++NPRQ+K+PDWFLNRQKD
Sbjct: 30  MTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
             DG+YSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQHTKTTGRRG+TVGVS
Sbjct: 90  IVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVS 149

Query: 121 KKR 124
           KK+
Sbjct: 150 KKK 152

[Close]

BLAST of Spo17373.1 vs. TAIR (Arabidopsis)
Match: AT1G22780.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 229.9 bits (585), Expect = 8.200e-61
Identity = 110/123 (89.43%), Postives = 118/123 (95.93%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           +TSIKGIGRR ANI CKKAD+DMNKRAGEL+ AE++ LMT+VANPRQFK+PDWFLNRQKD
Sbjct: 30  LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDG+YSQVVSN LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152

[Close]

BLAST of Spo17373.1 vs. TAIR (Arabidopsis)
Match: AT1G34030.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 229.9 bits (585), Expect = 8.200e-61
Identity = 110/123 (89.43%), Postives = 118/123 (95.93%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           +TSIKGIGRR ANI CKKAD+DMNKRAGEL+ AE++ LMT+VANPRQFK+PDWFLNRQKD
Sbjct: 30  LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDG+YSQVVSN LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152

[Close]

BLAST of Spo17373.1 vs. TAIR (Arabidopsis)
Match: AT4G09800.1 (S18 ribosomal protein)

HSP 1 Score: 229.9 bits (585), Expect = 8.200e-61
Identity = 110/123 (89.43%), Postives = 118/123 (95.93%), Query Frame = 1


		  
Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           +TSIKGIGRR ANI CKKAD+DMNKRAGEL+ AE++ LMT+VANPRQFK+PDWFLNRQKD
Sbjct: 30  LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDG+YSQVVSN LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152

The following BLAST results are available for this feature:

BLAST of Spo17373.1 vs. NCBI nr
BLAST of Spo17373.1 vs. UniProtKB/TrEMBL
BLAST of Spo17373.1 vs. ExPASy Swiss-Prot
BLAST of Spo17373.1 vs. TAIR (Arabidopsis)

BLAST of Spo17373.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902221303\|gb\|KNA18890.1\|	9.7e-64	100.	hypothetical protein SOVF_0669...	[more]
gi\|731374327\|ref\|XP_010666932.1\|	1.6e-61	96.7	PREDICTED: 40S ribosomal prote...	[more]
gi\|731361198\|ref\|XP_010692226.1\|	5.9e-61	95.1	PREDICTED: 40S ribosomal prote...	[more]
gi\|922352409\|ref\|XP_013452021.1\|	3.8e-60	93.5	ribosomal protein S13P/S18e [M...	[more]
gi\|217071380\|gb\|ACJ84050.1\|	5.0e-60	93.5	unknown [Medicago truncatula]	[more]

BLAST of Spo17373.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RHD4_SPIOL	6.8e-64	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B411_BETVU	1.1e-61	96.7	Uncharacterized protein OS=Bet...	[more]
A0A0J8BJ24_BETVU	4.1e-61	95.1	Uncharacterized protein OS=Bet...	[more]
G7IEW7_MEDTR	2.7e-60	93.5	Ribosomal protein S13P/S18e OS...	[more]
B7FH21_MEDTR	3.5e-60	93.5	Putative uncharacterized prote...	[more]

BLAST of Spo17373.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RS18_ARATH	1.5e-59	89.4	40S ribosomal protein S18 OS=A...	[more]
RS18_BRABE	5.9e-53	78.0	40S ribosomal protein S18 OS=B...	[more]
RS18_ARGIR	1.1e-51	75.6	40S ribosomal protein S18 OS=A...	[more]
RS18_DANRE	2.1e-50	74.8	40S ribosomal protein S18 OS=D...	[more]
RS18_SPOFR	6.1e-50	73.9	40S ribosomal protein S18 OS=S...	[more]

BLAST of Spo17373.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT1G22780.1	8.2e-61	89.4	Ribosomal protein S13/S18 fami...	[more]
AT1G34030.1	8.2e-61	89.4	Ribosomal protein S13/S18 fami...	[more]
AT4G09800.1	8.2e-61	89.4	S18 ribosomal protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001892	Ribosomal protein S13	PIR	PIRSF002134	RPS13p_RPS13a_RPS18e_RPS13o	coord: 1..123 score: 9.6
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 1..113 score: 7.0
IPR001892	Ribosomal protein S13	PROFILE	PS50159	RIBOSOMAL_S13_2	coord: 1..116 score: 29
IPR010979	Ribosomal protein S13-like, H2TH	unknown	SSF46946	S13-like H2TH domain	coord: 1..123 score: 2.52
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 92..105 scor
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	4.10.910.10		coord: 77..120 score: 1.3
None	No IPR available	GENE3D	1.10.8.50		coord: 1..54 score: 2.0
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 1..123 score: 1.2
None	No IPR available	PANTHER	PTHR10871:SF6	40S RIBOSOMAL PROTEIN S18	coord: 1..123 score: 1.2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome