Spo17519.1 (mRNA)

Overview
NameSpo17519.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 2734147 .. 2735204 (+)
Sequence length806
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACACTTCATGCAACAACTGCAAATCAAGAGTAGATGAGAATCAATACAACAACAAATGCCAAGATTTCCCAGAATTCCCCATCAACAGGTGGAGTACCATTACTATATCCAATATAATATACCACAATAACATCAACATATCTAATATCATCTACTGTAGGTACCGAATAATTGCCACAATTGATGACGGAAACGCAACGATGACTGTGGCGATCTTTGACAAAGACGTGGAAAAAATTATTGCAAACCCTATAGCATCAATGATGAAGATTTATGATCAGGTAAGACATTCACAATAATCAAATACACAAAGATAACAAAATGCGATGACATACACAATAATTACAATGCAAATCCAGGAAAAGGGGGTCGAGAAGGTTTCAAATGAACTACAACAATGCGTAGGGAAGACATGTACACTCAAGCTCAAAGTCAACAACAAAAGCTACATACAAGAGTTAACTGCTATAAAGGTCTTCCATGTTGAGACAGAGGAAAAAATAACAACAAAACGACACGGGAAGGAGAAACTCAAAGAAATAAAAAAAAGGAGGGCCAACCAAACAAAAAACACAAGAACAATAGGTAATGACTCGGAAAAACATATTAAAATAACAAACCCAAAATACTAGCAACAGCCGTAGTGTTTATAAAATGTAACACTAACATGTTCATAAAATGAAACAGGGTCGACACACCAACAGAGGAGATCCCTACAACGAGCATATCACCAACTACAAACCAAGACCCAATACAACAGGCGGACGACGAAACCAACTACTAAATGATGAGCAAAGTTCAAACGCTCATGTGCGTTGCATGAGTCCTTACTTTTATAAATTTCAAAACCATCTTAACAAATTACTTTTACATATTTAATAGATTTGGTTACTATTTAACCTTCATAGATTTTGGGGTTAAACAATAGAGATAAATACAATAAATAAAGAAAATTTCAGTGGCAGAAACAAAGGTGCAAAGTGTGCAAAGTGTGGGACTTACAGGAGATTACATACATATTAGTGGTATGACAACAATTAATAATAGTACTTAT

mRNA sequence

ATGTACACTTCATGCAACAACTGCAAATCAAGAGTAGATGAGAATCAATACAACAACAAATGCCAAGATTTCCCAGAATTCCCCATCAACAGGTACCGAATAATTGCCACAATTGATGACGGAAACGCAACGATGACTGTGGCGATCTTTGACAAAGACGTGGAAAAAATTATTGCAAACCCTATAGCATCAATGATGAAGATTTATGATCAGGAAAAGGGGGTCGAGAAGGTTTCAAATGAACTACAACAATGCGTAGGGAAGACATGTACACTCAAGCTCAAAGTCAACAACAAAAGCTACATACAAGAGTTAACTGCTATAAAGGTCTTCCATGTTGAGACAGAGGAAAAAATAACAACAAAACGACACGGGAAGGAGAAACTCAAAGAAATAAAAAAAAGGAGGGCCAACCAAACAAAAAACACAAGAACAATAGGGTCGACACACCAACAGAGGAGATCCCTACAACGAGCATATCACCAACTACAAACCAAGACCCAATACAACAGGCGGACGACGAAACCAACTACTAAATGATGAGCAAAGTTCAAACGCTCATGTGCGTTGCATGAGTCCTTACTTTTATAAATTTCAAAACCATCTTAACAAATTACTTTTACATATTTAATAGATTTGGTTACTATTTAACCTTCATAGATTTTGGGGTTAAACAATAGAGATAAATACAATAAATAAAGAAAATTTCAGTGGCAGAAACAAAGGTGCAAAGTGTGCAAAGTGTGGGACTTACAGGAGATTACATACATATTAGTGGTATGACAACAATTAATAATAGTACTTAT

Coding sequence (CDS)

ATGTACACTTCATGCAACAACTGCAAATCAAGAGTAGATGAGAATCAATACAACAACAAATGCCAAGATTTCCCAGAATTCCCCATCAACAGGTACCGAATAATTGCCACAATTGATGACGGAAACGCAACGATGACTGTGGCGATCTTTGACAAAGACGTGGAAAAAATTATTGCAAACCCTATAGCATCAATGATGAAGATTTATGATCAGGAAAAGGGGGTCGAGAAGGTTTCAAATGAACTACAACAATGCGTAGGGAAGACATGTACACTCAAGCTCAAAGTCAACAACAAAAGCTACATACAAGAGTTAACTGCTATAAAGGTCTTCCATGTTGAGACAGAGGAAAAAATAACAACAAAACGACACGGGAAGGAGAAACTCAAAGAAATAAAAAAAAGGAGGGCCAACCAAACAAAAAACACAAGAACAATAGGGTCGACACACCAACAGAGGAGATCCCTACAACGAGCATATCACCAACTACAAACCAAGACCCAATACAACAGGCGGACGACGAAACCAACTACTAAATGA

Protein sequence

MYTSCNNCKSRVDENQYNNKCQDFPEFPINRYRIIATIDDGNATMTVAIFDKDVEKIIANPIASMMKIYDQEKGVEKVSNELQQCVGKTCTLKLKVNNKSYIQELTAIKVFHVETEEKITTKRHGKEKLKEIKKRRANQTKNTRTIGSTHQQRRSLQRAYHQLQTKTQYNRRTTKPTTK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo17519Spo17519gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo17519.1Spo17519.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17519.1.exon.1Spo17519.1.exon.1exon
Spo17519.1.exon.2Spo17519.1.exon.2exon
Spo17519.1.exon.3Spo17519.1.exon.3exon
Spo17519.1.exon.4Spo17519.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17519.1.CDS.1Spo17519.1.CDS.1CDS
Spo17519.1.CDS.2Spo17519.1.CDS.2CDS
Spo17519.1.CDS.3Spo17519.1.CDS.3CDS
Spo17519.1.CDS.4Spo17519.1.CDS.4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17519.1.utr3p.1Spo17519.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo17519.1 vs. NCBI nr
Match: gi|731344925|ref|XP_010683662.1| (PREDICTED: replication factor A protein 1-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 84.7 bits (208), Expect = 1.800e-13
Identity = 49/173 (28.32%), Postives = 91/173 (52.60%), Query Frame = 1 

		  

Query: 2   YTSCNNCKSRVDENQYNNKCQDFPEFPINRYRIIATIDDGNATMTVAIFDKDVEKIIANP 61
           Y SC+ CK+++DE  Y  KC    ++P  RY +   IDDG+A + +A+FDK+ E++I +P
Sbjct: 300 YNSCDACKTKIDETSYCTKCDVVVKYPKIRYLLTVDIDDGSACVPLALFDKEAERVIGSP 359

Query: 62  IASMMKIYDQEKGVEKVSNELQQCVGKTCTLKLKVNNKSYIQELTAIKVFHVETEEKITT 121
           +  ++ +  +E G EKV+  LQ C+GK    ++K++ +S   EL   + F    + + + 
Sbjct: 360 VNKLLDLQKKENGNEKVTERLQICIGKNFAFRVKLSTRSETTELICQRTFETNYQLEKSF 419

Query: 122 KRHGKEKLKEIKKRRAN-----QTKNTRTIGSTHQQRRSLQRAYHQLQTKTQY 170
           +    + +  IKK +         KN  T+ +  Q  + L  +      ++Q+
Sbjct: 420 EEQQHKDMASIKKEKGQDADIINAKNPTTVETGSQGSQVLDDSGEDTNIESQF 472
[Close]
BLAST of Spo17519.1 vs. NCBI nr
Match: gi|731316030|ref|XP_010693938.1| (PREDICTED: replication factor A protein 1-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 84.7 bits (208), Expect = 1.800e-13
Identity = 49/173 (28.32%), Postives = 91/173 (52.60%), Query Frame = 1 

		  

Query: 2   YTSCNNCKSRVDENQYNNKCQDFPEFPINRYRIIATIDDGNATMTVAIFDKDVEKIIANP 61
           Y SC+ CK+++DE  Y  KC    ++P  RY +   IDDG+A + +A+FDK+ E++I +P
Sbjct: 300 YNSCDACKTKIDETSYCTKCDVVVKYPKIRYLLTVDIDDGSACVPLALFDKEAERVIGSP 359

Query: 62  IASMMKIYDQEKGVEKVSNELQQCVGKTCTLKLKVNNKSYIQELTAIKVFHVETEEKITT 121
           +  ++ +  +E G EKV+  LQ C+GK    ++K++ +S   EL   + F    + + + 
Sbjct: 360 VNKLLDLQKKENGNEKVTERLQICIGKNFAFRVKLSTRSETTELICQRTFETNYQLEKSF 419

Query: 122 KRHGKEKLKEIKKRRAN-----QTKNTRTIGSTHQQRRSLQRAYHQLQTKTQY 170
           +    + +  IKK +         KN  T+ +  Q  + L  +      ++Q+
Sbjct: 420 EEQQHKDMASIKKEKGQDADIINAKNPTTVETGSQGSQVLDDSGEDTNIESQF 472
[Close]
BLAST of Spo17519.1 vs. NCBI nr
Match: gi|731316032|ref|XP_010693948.1| (PREDICTED: replication factor A protein 1-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 81.6 bits (200), Expect = 1.500e-12
Identity = 46/168 (27.38%), Postives = 90/168 (53.57%), Query Frame = 1 

		  

Query: 2   YTSCNNCKSRVDENQYNNKCQDFPEFPINRYRIIATIDDGNATMTVAIFDKDVEKIIANP 61
           Y SC+ CK+++DE  Y  KC    ++P  RY +   IDDG+A + +A+FDK+ E++I +P
Sbjct: 300 YNSCDACKTKIDETSYCTKCDVVVKYPKIRYLLTVDIDDGSACVPLALFDKEAERVIGSP 359

Query: 62  IASMMKIYDQEKGVEKVSNELQQCVGKTCTLKLKVNNKSYIQELTAIKVFHVETEEKITT 121
           +  ++ +  +E G EKV+  LQ C+GK    ++K++ +S   EL   + F    + + + 
Sbjct: 360 VNKLLDLQKKENGNEKVTERLQICIGKNFAFRVKLSTRSETTELICQRTFETNYQLEKSF 419

Query: 122 KRHGKEKLKEIKKRRANQTKNTRTIGSTHQQRRSLQRAYHQLQTKTQY 170
           +    + +++ +       KN  T+ +  Q  + L  +      ++Q+
Sbjct: 420 EEQQHKDMEKGQDADIINAKNPTTVETGSQGSQVLDDSGEDTNIESQF 467
[Close]
BLAST of Spo17519.1 vs. NCBI nr
Match: gi|731344929|ref|XP_010683664.1| (PREDICTED: replication factor A protein 1-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 81.6 bits (200), Expect = 1.500e-12
Identity = 46/168 (27.38%), Postives = 90/168 (53.57%), Query Frame = 1 

		  

Query: 2   YTSCNNCKSRVDENQYNNKCQDFPEFPINRYRIIATIDDGNATMTVAIFDKDVEKIIANP 61
           Y SC+ CK+++DE  Y  KC    ++P  RY +   IDDG+A + +A+FDK+ E++I +P
Sbjct: 300 YNSCDACKTKIDETSYCTKCDVVVKYPKIRYLLTVDIDDGSACVPLALFDKEAERVIGSP 359

Query: 62  IASMMKIYDQEKGVEKVSNELQQCVGKTCTLKLKVNNKSYIQELTAIKVFHVETEEKITT 121
           +  ++ +  +E G EKV+  LQ C+GK    ++K++ +S   EL   + F    + + + 
Sbjct: 360 VNKLLDLQKKENGNEKVTERLQICIGKNFAFRVKLSTRSETTELICQRTFETNYQLEKSF 419

Query: 122 KRHGKEKLKEIKKRRANQTKNTRTIGSTHQQRRSLQRAYHQLQTKTQY 170
           +    + +++ +       KN  T+ +  Q  + L  +      ++Q+
Sbjct: 420 EEQQHKDMEKGQDADIINAKNPTTVETGSQGSQVLDDSGEDTNIESQF 467
[Close]
BLAST of Spo17519.1 vs. NCBI nr
Match: gi|731365697|ref|XP_010694665.1| (PREDICTED: replication factor A protein 1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 77.8 bits (190), Expect = 2.100e-11
Identity = 45/168 (26.79%), Postives = 89/168 (52.98%), Query Frame = 1 

		  

Query: 2   YTSCNNCKSRVDENQYNNKCQDFPEFPINRYRIIATIDDGNATMTVAIFDKDVEKIIANP 61
           Y SC+ CK+++DE  Y  KC    ++P  RY +   IDDG+A + +A+FDK+ E++I + 
Sbjct: 259 YNSCDACKTKIDETSYCTKCDVVVKYPKIRYLLTVDIDDGSACVPLALFDKEAERVIGSL 318

Query: 62  IASMMKIYDQEKGVEKVSNELQQCVGKTCTLKLKVNNKSYIQELTAIKVFHVETEEKITT 121
           +  ++ +  +E G EKV+  LQ C+GK    ++K++ +S   EL   + F    + + + 
Sbjct: 319 VNKLLDLQKKENGNEKVTERLQICIGKNFAFRVKLSTRSETTELICQRTFETNYQLEKSF 378

Query: 122 KRHGKEKLKEIKKRRANQTKNTRTIGSTHQQRRSLQRAYHQLQTKTQY 170
           +    + +++ +       KN  T+ +  Q  + L  +      ++Q+
Sbjct: 379 EEQQHKDMEKGQDADIINAKNPTTVETGSQGSQVLDDSGEDTNIESQF 426
[Close]
BLAST of Spo17519.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QBQ8_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_197310 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.300e-10
Identity = 45/129 (34.88%), Postives = 76/129 (58.91%), Query Frame = 1 

		  

Query: 34  IIATIDDGNATMTVAIFDKDVEKIIANPIASMMKIYDQEKGVEKVSNELQQCVGKTCTLK 93
           ++ T+ +G+A M + +FDK VEKI+  PI++M+KI  Q+ G EKV    + C+G +   K
Sbjct: 163 LVITVKEGDAYMRIGMFDKTVEKIVQMPISAMIKISTQQYGDEKVHERFENCIGNSFVFK 222

Query: 94  LKVNNKSYIQELTAIKVFHVETEEKITTKRHGKEKLKEIKKRRANQTKNTR----TIGST 153
           ++VN + + QELTAIKVF ++ EEK   +    +  + + +   N+   T     T  ST
Sbjct: 223 VQVNKRGFTQELTAIKVFTLD-EEKEDNQTQSTDLTQTLVQMATNKRSATEIEASTSIST 282

Query: 154 HQQRRSLQR 159
           HQ  + +++
Sbjct: 283 HQGLKKIKQ 290
The following BLAST results are available for this feature:
BLAST of Spo17519.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731344925|ref|XP_010683662.1|1.8e-1328.3PREDICTED: replication factor ... [more]
gi|731316030|ref|XP_010693938.1|1.8e-1328.3PREDICTED: replication factor ... [more]
gi|731316032|ref|XP_010693948.1|1.5e-1227.3PREDICTED: replication factor ... [more]
gi|731344929|ref|XP_010683664.1|1.5e-1227.3PREDICTED: replication factor ... [more]
gi|731365697|ref|XP_010694665.1|2.1e-1126.7PREDICTED: replication factor ... [more]
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BLAST of Spo17519.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QBQ8_SPIOL6.3e-1034.8Uncharacterized protein (Fragm... [more]
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BLAST of Spo17519.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo17519.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 1..134
score: 7.1
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 1..116
score: 9.59
IPR013955Replication factor A, C-terminalPFAMPF08646Rep_fac-A_Ccoord: 1..106
score: 1.