Spo17549.1 (mRNA)

Overview
NameSpo17549.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_04113 : 611 .. 4694 (-)
Sequence length1373
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGATGGAAGGAATACTGATTCGATCTCATTTGAGGAGCTTATACCCCTCACTTATTCATGGGAGGACGATACGGAGTTCAAAGATCTCACAGTTGGGGCAATTTCCCCAAGATTTTTGAGTTCTGAGTTTCTAAACTTTGCTGAGAAGTTCAGAAACGCAAACCCACTTGCTTGGCTCGAATCTGGTGATGTTCCTTGTTTGTATCAGCCCCCTCCTGTGAGATCCGAAAACGGTTTCACCACTCCAACAAAGAAGGAAGCAACAAGTGAGAGTCATGGAGATCTCTCATTTTCTCCGTCACAAATGTCACAAGACCCTCGTGCTTGGCTTGAATCTGGTAATGTTCCGTGTCTCTATCACTCTAATTTTCTTGTTCATGATCGTGTTCTTGATCCTAAGCCAATTTCGCCTCTTAATTCTCATGTTGGTGATGAACAAATTGTCCCCGAAACGCCGGAGGAAGTGCCAGTTAGACTAGAGAACACATTTGCTGGGTACAAGAAAACATGGAGGAGACTATTAGAATCTCCTTCAAAATTGAGTGTCAAAAAGCCTAAAATTGGGTGATATCAGTGGTCATCTCCAGGTTTGTTACTGTTTTTCTCTCTCTTTCATTTTCACCTTTAATTTCTCCTATTTGAAATATTTTCTGTTTTGTGGGTTGTTTGTTCATATCTAAAATGTTTTTTCTTGGATGAAATTGGTTGATGAAATTGGTTGATGTTTCTGTTGTTTGCAATTGGTTGATGCAATTGTTTTGTGGGTTGTTGTTTGCAATTGGTTGATGTTTCAGTTGTTTGCAATTGGTTGATGAAAGAGGCTAGTTCTATTTTTACTCACACATGATATGCATAAATATTCATGTAAAACTATTCATGTATTAAATTATGAAACATGTATACTCAAAAAATGCACCAGAACTTTACCTGAAGAGTTGGATGTAAAATTAGCAAGATTGTTGGCTGCTTTTCTTAAGTGGTAGCAGATTAGCAATTTATAGCAGATTAGCAATTTATCTTCTTTCTAACTATTGTCTATCATAGAGGCTTATAGCTTTATTATAAAAAGTAGCTTAAATTTTCTTCTTCCGATCCTCTTCTCGTGTATGCTGAGCTTTCCCCCTGCCCCTATCTCTTGCTAGAAATTTGGGCGTGAAAGCTTTGTACCTAATTTTCAATATTGTGGCTTATTTGGGCATCCTGAATTTCTGAGTTTAAGTTTCCACATAAATATGAGTACAAGGTTTTACAGAAGATTTTATGTTGTTAATGCAATGAAAAAAAGGTCTAAGAATCCCCAAATTCGTAACTCATATAAGTAAAACAAAAGCACCTGACTTTTCTATTATTTAAGGCAAGACTATGATACTTTCCTCTTTCCATTACTATGTATGCTCATGAACATCAGTACCCATATGAAATTATCAAGCCAATACTCATGAATATCAGTAAACAAACTGTTTATGCACACTAATAAATGAATTACATGTGACTGTTTGTTTCATTCTTGTTTGAGTAATAGTAGTGATATTCCTTGCTACCATGATAAGACTAGTTGTGATTCCCGTGAAGTAAATGAATTTCTTGAACATTATTGTTTTCTTGAACATGTGTCTAATAATCAAAGTAGTCATTTTTTATACATCAAAATATTTTCACAAAAAGGTACAACATGTGTCTAGTTAATCCCATCCTAATCTGTACCACATATACAAAAGTTGTTGCCTTACCTAACTTTTACACATCAATACTACATCAATATTACATTAGTTAGTAGAATTAGGCTAAGACACTTCCAAAATAAACTTTATAACATCCCAAAATGTATGCAGTAACTGTTAATTTGCATCTTCCATATCAATGTCATAGTCATATGCCCCTGGTGCTACCACAAAACCCTCATTTAAAAAGTCAACGGCATCATCTATGATATGTTGTTGGATTTGAGTATCGGTAGGCAACAAACGAAGTCTTTCTAGTCTTTTCTTGCCTTGATGTGGACTCTTGTAGTTGTTCCCTCCCTTCTGTTTTAGTATTTCAACCATCACGTATTGTAGTTGTAGCCATGTGTGGTTTAGACTCTTAGGGTCATACTCCATGTAAGCATCGTGCACTGATTGAACCAACTCCGTGACATTTTTTGGGAACTTTTGGTGTTGTAGTGACTGTATGCCCCTAAAGAATCCCAAGTCCAAAACATTCAGATCAGGAGATTGTGCTGGCTGGCAGATTAAGTGAATGTCAAACCCATATTTATTTGCTTCCTCTAGAAATTCAGGATCGTTAGGAAAAATATGTGGCCTTGCATTATCTTGTTGTATCCAAATAGTTTTACATGCATTAGCCGGCCATTTAGCCCTGATTGTTGGTAGCAATTCATCGAGCATTTTCCTTCTAATGACATTCTTGGTTATTGATGGTGTTGCTTTGGTCTCGATGGTGCCCCTTTCTCTATTTTTACTTGTTCTGATGGCTGCAACTTCATCTGTGAATGCCCAAATCCCTATTTTCCCATCCCATATAACCTCTCCACCACTAGCTATTATTGGTCTTGCCACTCCCGATAAGAACATCACCTTTTCTGTGTAGTTCTTGCTTTGAATATGTCGGTAAGGTTCTTCTTCGCCTGCCAGTAGATAATATCGTTGCGTGTTTTTGCTCATAAAGAACCAATTTTCATCAATATGCACAAAATTGCTAAGTGACATGAATGTTGATTGTTGTGTGACTGTTCTTGGAAGGGTGAGACCCAAAATCCATTTCAATCTAGTGATTTTGTGTGCTGCAGAAACTGTTGGCTTGATAGAGTTCGTATGTGATCTGATAATCCCTTTTTTTAACAATTTATACACCATCGAAGGGCTGCATTCTAGTGCTGATGCAAAACTTTGTATGGTGGTTCTTGCTTTTTGACTTATTTGCAGCATGATTTCAGTGTCAAAGTCTCTTGGTTTTCTCCCCACCTTCCCTGTTTTTTTATTCTTCACATCAATCAGATCTGGACCTAGCTTTCCTTGTTCTCTAACATTTTTCCACATCCTACTAACTGTAGACCTGCTTATGTCGAATTCATCTTGTAATTGTTGGCTTACTCCTGTTGGTAATCTCACCCAGTCTCTCGATAATACCAACAACCTTTGTGCCAGATGAGTTCGTCCTTTGTTATCTTGTTCATGTCTTTTTTTAGTTAAGATGGGATTAACATGCAAACCAGTTTCATTTTGTTGATTATCATGCAAATTAGTTTCTGTTTCAGTTTGTTGATTATCATGAATATCATTTTCTTCACTATCACTTTCACTTTCACTTTCATGTTCGCTTAAGTACCATACCTCGTTATCTTCAAAGTCAGCATCATCCTCGTCAACCATAGCAGAAAATTCAAGCGCTTCAAGCTCTTCAGCAGAAATTTCAATAAAAGGATCCCCTGTAGCAACAGCAACAGCAGCAACAGCAGCAACAGCTAACTCTCTCTCTCCCACGGGATGTGCATACTCCATGAAGCTGCTTTCAGCATCGTGGCTTTCCAAATTCAAGTCAAACAAGTGCATGTGTGTGATGTGAGTGAAATTATGAAGTGTAGTAGCAGTGTTTTTTTGTAGTTGTAAATGGTGGGAGTTATTTTGATGGGGCTGTGTTTTTATAAGAGTTTAGGTCAAAAAAGTTCTCCAAAATTTAAATTGTAAAGTTTGCCCCCTTTTTCAAATTTTCATTAAATGTTTGGAGGGAAAACCAATTTTGTTTTCATTTTCCCTCCTTACATTGTACCTTAATTTGTAATTAAGGAGAAGGTCCCCACTTGCCTTTTGGATTACCCCATTTCTTTTGACATTAATTAAAGTACATCACATGGGTTGTTGTACTTTTTTGCACTCTCTCTCCTTTTCTTAATATGTGCGCCTATTTCTATTGTGTCAATTAATTAAGAATGAAGTACCAATTTTATATATTAGATTAGATTAGTTTTTTATTCTGCATTGAATTTTATTTTAGATTTTATTTTTTAATTAGGAGAGTGTTTGTTTTTGGATGAAATTGTATATGTGTAATATTAATAATAATTAATAAAAATATCTACG

mRNA sequence

ATGTTTGATGGAAGGAATACTGATTCGATCTCATTTGAGGAGCTTATACCCCTCACTTATTCATGGGAGGACGATACGGAGTTCAAAGATCTCACAGTTGGGGCAATTTCCCCAAGATTTTTGAGTTCTGAGTTTCTAAACTTTGCTGAGAAGTTCAGAAACGCAAACCCACTTGCTTGGCTCGAATCTGGTGATGTTCCTTGTTTGTATCAGCCCCCTCCTGTGAGATCCGAAAACGGTTTCACCACTCCAACAAAGAAGGAAGCAACAAGTGAGAGTCATGGAGATCTCTCATTTTCTCCGTCACAAATGTCACAAGACCCTCGTGCTTGGCTTGAATCTGGTAATGTTCCGTGTCTCTATCACTCTAATTTTCTTGTTCATGATCGTGTTCTTGATCCTAAGCCAATTTCGCCTCTTAATTCTCATGTTGGTGATGAACAAATTGTCCCCGAAACGCCGGAGGAAGTGCCAGTTAGACTAGAGAACACATTTGCTGGGTACAAGAAAACATGGAGGAGACTATTAGAATCTCCTTCAAAATTGAGTGTCAAAAAGCCTAAAATTGGTAGTGATATTCCTTGCTACCATGATAAGACTAGTTGTGATTCCCGTGAATACCATACCTCGTTATCTTCAAAGTCAGCATCATCCTCGTCAACCATAGCAGAAAATTCAAGCGCTTCAAGCTCTTCAGCAGAAATTTCAATAAAAGGATCCCCTGTAGCAACAGCAACAGCAGCAACAGCAGCAACAGCTAACTCTCTCTCTCCCACGGGATGTGCATACTCCATGAAGCTGCTTTCAGCATCGTGGCTTTCCAAATTCAAGTCAAACAAGTGCATGTGTGTGATGTGAGTGAAATTATGAAGTGTAGTAGCAGTGTTTTTTTGTAGTTGTAAATGGTGGGAGTTATTTTGATGGGGCTGTGTTTTTATAAGAGTTTAGGTCAAAAAAGTTCTCCAAAATTTAAATTGTAAAGTTTGCCCCCTTTTTCAAATTTTCATTAAATGTTTGGAGGGAAAACCAATTTTGTTTTCATTTTCCCTCCTTACATTGTACCTTAATTTGTAATTAAGGAGAAGGTCCCCACTTGCCTTTTGGATTACCCCATTTCTTTTGACATTAATTAAAGTACATCACATGGGTTGTTGTACTTTTTTGCACTCTCTCTCCTTTTCTTAATATGTGCGCCTATTTCTATTGTGTCAATTAATTAAGAATGAAGTACCAATTTTATATATTAGATTAGATTAGTTTTTTATTCTGCATTGAATTTTATTTTAGATTTTATTTTTTAATTAGGAGAGTGTTTGTTTTTGGATGAAATTGTATATGTGTAATATTAATAATAATTAATAAAAATATCTACG

Coding sequence (CDS)

ATGTTTGATGGAAGGAATACTGATTCGATCTCATTTGAGGAGCTTATACCCCTCACTTATTCATGGGAGGACGATACGGAGTTCAAAGATCTCACAGTTGGGGCAATTTCCCCAAGATTTTTGAGTTCTGAGTTTCTAAACTTTGCTGAGAAGTTCAGAAACGCAAACCCACTTGCTTGGCTCGAATCTGGTGATGTTCCTTGTTTGTATCAGCCCCCTCCTGTGAGATCCGAAAACGGTTTCACCACTCCAACAAAGAAGGAAGCAACAAGTGAGAGTCATGGAGATCTCTCATTTTCTCCGTCACAAATGTCACAAGACCCTCGTGCTTGGCTTGAATCTGGTAATGTTCCGTGTCTCTATCACTCTAATTTTCTTGTTCATGATCGTGTTCTTGATCCTAAGCCAATTTCGCCTCTTAATTCTCATGTTGGTGATGAACAAATTGTCCCCGAAACGCCGGAGGAAGTGCCAGTTAGACTAGAGAACACATTTGCTGGGTACAAGAAAACATGGAGGAGACTATTAGAATCTCCTTCAAAATTGAGTGTCAAAAAGCCTAAAATTGGTAGTGATATTCCTTGCTACCATGATAAGACTAGTTGTGATTCCCGTGAATACCATACCTCGTTATCTTCAAAGTCAGCATCATCCTCGTCAACCATAGCAGAAAATTCAAGCGCTTCAAGCTCTTCAGCAGAAATTTCAATAAAAGGATCCCCTGTAGCAACAGCAACAGCAGCAACAGCAGCAACAGCTAACTCTCTCTCTCCCACGGGATGTGCATACTCCATGAAGCTGCTTTCAGCATCGTGGCTTTCCAAATTCAAGTCAAACAAGTGCATGTGTGTGATGTGA

Protein sequence

MFDGRNTDSISFEELIPLTYSWEDDTEFKDLTVGAISPRFLSSEFLNFAEKFRNANPLAWLESGDVPCLYQPPPVRSENGFTTPTKKEATSESHGDLSFSPSQMSQDPRAWLESGNVPCLYHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLENTFAGYKKTWRRLLESPSKLSVKKPKIGSDIPCYHDKTSCDSREYHTSLSSKSASSSSTIAENSSASSSSAEISIKGSPVATATAATAATANSLSPTGCAYSMKLLSASWLSKFKSNKCMCVM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo17549Spo17549gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo17549.1Spo17549.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17549.1.CDS.3Spo17549.1.CDS.3CDS
Spo17549.1.CDS.2Spo17549.1.CDS.2CDS
Spo17549.1.CDS.1Spo17549.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17549.1.utr3p.1Spo17549.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17549.1.exon.3Spo17549.1.exon.3exon
Spo17549.1.exon.2Spo17549.1.exon.2exon
Spo17549.1.exon.1Spo17549.1.exon.1exon


Homology
[Close]
BLAST of Spo17549.1 vs. NCBI nr
Match: gi|902212532|gb|KNA17008.1| (hypothetical protein SOVF_084050 [Spinacia oleracea])

HSP 1 Score: 380.2 bits (975), Expect = 3.200e-102
Identity = 183/185 (98.92%), Postives = 183/185 (98.92%), Query Frame = 1 

		  

Query: 1   MFDGRNTDSISFEELIPLTYSWEDDTEFKDLTVGAISPRFLSSEFLNFAEKFRNANPLAW 60
           MFDGRNTDSISFEELIPLTYSWEDDTEFKDLTVGAISPRFLSSEFLNFAEKFRNANPLAW
Sbjct: 1   MFDGRNTDSISFEELIPLTYSWEDDTEFKDLTVGAISPRFLSSEFLNFAEKFRNANPLAW 60

Query: 61  LESGDVPCLYQPPPVRSENGFTTPTKKEATSESHGDLSFSPSQMSQDPRAWLESGNVPCL 120
           LESGDVPCLYQPPPVRSENGFTTPTKKEATSESHGDLSFSPSQMSQDPRAWLESGNVPCL
Sbjct: 61  LESGDVPCLYQPPPVRSENGFTTPTKKEATSESHGDLSFSPSQMSQDPRAWLESGNVPCL 120

Query: 121 YHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLENTFAGYKKTWRRLLESPS 180
           YHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLENTFAGYKKT RRLLESP 
Sbjct: 121 YHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLENTFAGYKKTRRRLLESPL 180

Query: 181 KLSVK 186
           KLSVK
Sbjct: 181 KLSVK 185
[Close]
BLAST of Spo17549.1 vs. NCBI nr
Match: gi|902184794|gb|KNA10371.1| (hypothetical protein SOVF_144980 [Spinacia oleracea])

HSP 1 Score: 167.5 bits (423), Expect = 3.300e-38
Identity = 79/87 (90.80%), Postives = 81/87 (93.10%), Query Frame = 1 

		  

Query: 104 MSQDPRAWLESGNVPCLYHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLEN 163
           MSQDPRAWLESGNVPCLYHSNFLVHD VLDPKPI PL+SHVGDEQIVPETPEE+PVRLEN
Sbjct: 1   MSQDPRAWLESGNVPCLYHSNFLVHDGVLDPKPILPLDSHVGDEQIVPETPEEMPVRLEN 60

Query: 164 TFAGYKKTWRRLLESPSKLSVKKPKIG 191
           TF GYKKT RRLLESPSK  VKKPKIG
Sbjct: 61  TFVGYKKTRRRLLESPSKSGVKKPKIG 87
[Close]
BLAST of Spo17549.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBY0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_084050 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 2.200e-102
Identity = 183/185 (98.92%), Postives = 183/185 (98.92%), Query Frame = 1 

		  

Query: 1   MFDGRNTDSISFEELIPLTYSWEDDTEFKDLTVGAISPRFLSSEFLNFAEKFRNANPLAW 60
           MFDGRNTDSISFEELIPLTYSWEDDTEFKDLTVGAISPRFLSSEFLNFAEKFRNANPLAW
Sbjct: 1   MFDGRNTDSISFEELIPLTYSWEDDTEFKDLTVGAISPRFLSSEFLNFAEKFRNANPLAW 60

Query: 61  LESGDVPCLYQPPPVRSENGFTTPTKKEATSESHGDLSFSPSQMSQDPRAWLESGNVPCL 120
           LESGDVPCLYQPPPVRSENGFTTPTKKEATSESHGDLSFSPSQMSQDPRAWLESGNVPCL
Sbjct: 61  LESGDVPCLYQPPPVRSENGFTTPTKKEATSESHGDLSFSPSQMSQDPRAWLESGNVPCL 120

Query: 121 YHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLENTFAGYKKTWRRLLESPS 180
           YHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLENTFAGYKKT RRLLESP 
Sbjct: 121 YHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLENTFAGYKKTRRRLLESPL 180

Query: 181 KLSVK 186
           KLSVK
Sbjct: 181 KLSVK 185
[Close]
BLAST of Spo17549.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QV16_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_144980 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.300e-38
Identity = 79/87 (90.80%), Postives = 81/87 (93.10%), Query Frame = 1 

		  

Query: 104 MSQDPRAWLESGNVPCLYHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLEN 163
           MSQDPRAWLESGNVPCLYHSNFLVHD VLDPKPI PL+SHVGDEQIVPETPEE+PVRLEN
Sbjct: 1   MSQDPRAWLESGNVPCLYHSNFLVHDGVLDPKPILPLDSHVGDEQIVPETPEEMPVRLEN 60

Query: 164 TFAGYKKTWRRLLESPSKLSVKKPKIG 191
           TF GYKKT RRLLESPSK  VKKPKIG
Sbjct: 61  TFVGYKKTRRRLLESPSKSGVKKPKIG 87
The following BLAST results are available for this feature:
BLAST of Spo17549.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902212532|gb|KNA17008.1|3.2e-10298.9hypothetical protein SOVF_0840... [more]
gi|902184794|gb|KNA10371.1|3.3e-3890.8hypothetical protein SOVF_1449... [more]
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BLAST of Spo17549.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RBY0_SPIOL2.2e-10298.9Uncharacterized protein OS=Spi... [more]
A0A0K9QV16_SPIOL2.3e-3890.8Uncharacterized protein OS=Spi... [more]
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BLAST of Spo17549.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo17549.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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