Spo17552.1 (mRNA)

Overview
NameSpo17552.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01146 : 28239 .. 29921 (-)
Sequence length294
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTCAGGTTGGATAAATAATCAAAACATTCACGACTTTTATGAAAATATCCAAATAAAATAAAGAAACCTAGAAAGAAATAACCAATTTGAAAAAACTACATACCATTGAAAAGAAAAATCTTGGGAGATCTAGAATCCCCAGGAAATCAAGATGAACATACATGCTTCAACTAAAGAAATACAGAAAAAAGAGAATGCAAATTTCGAAACGAATTTGGAGTTTAAATCACCCAAATTTTACTGATTTGGACATGAATTCATGAGCAGGACGACTCAACATCAAGAAATTCAGTAATCATAACTTATTATTACCTGAAAATAAAAAATAAACACAAAATTAATTAATCACAACAATTAGTTTGTAAAACAGAGAAAATTATGAAGAAAAAAGAAAAAATACAGTAGCGTCTCAATCAAATGAATAGCTGAAATACAGAGTAAATAAGACATAAATCGGAAATGGAATAGTAGAGAGAGACTGGAAGATGAACAACCAGTCGTTGTAAAGCGTGAGTTTTTATTTAAATGAAAATTGGAAAGCGTGAAGGGCATAGGAGAACGACATAAGAGTAGTGCAGTTTGGGCGGGAAAATATTAAAGGAGGACACGACACGTGTACAGCTTGAGAGGAAAATGATGTCAGCGGTTATTACTTTAGTAATAGTTATAGATTTAAGTGGGGGGTAAGGGGGAGTTAATTAACAAATTAAGTTAATGGAATTAACATTTCCCTTAACAAGTTAACGGAGTTAATTCCATCAATATTTAGTGGTATCTGATAGTTTGTCTCATTCAATGTGGACATGCGTCAGTAATTAATAATATCATTGGTTATATTGTTTAATGTTTGTTGTCATCTTTGGGCTTAGGCCCGCAAATTCTATTCGCTAATTAGAACATTTTACGGATCAATACATTTAACTTTAGTTAACAACATATTAGAATACTAATTGACTGTTGGTTCAGTGGTGATTGAGGCTGAACTTGGTAGGGAGGACCCGTGCTCGATCCCCCGCAACAACAATTGGAAGGGGAATGGAACCTATCCACTCAGAACTCGCCCCGAATCTGGATTAGCCCTAAGGGTGAACCGGGTGGTACAATATATAGTAATGATACTTTCTACTCTCTCCGACCCTAAAAAATTGTCTCATATACTATAAATAGATTTTCCTATTTGTTTTCCCCATACCTTATTTAGTTAATGGTCCTTAAATATTACTATAAATTTAATCTACAACCCTTTTAAAAGCAAGAACCTCTTCTTTGGAACAGTAGAATTCTCTTATGAACAGTGTATTTAGCACATTTACCAATTTACCCTCTTAGCTTTTCTTCTCCAATCCAACCTGCATTCACCAGCCTAGAAATCACTAACCCCTCTCTTCTTTCAGTATCCTCCTCTCTCCTTTCAAGAAACCTGGACTCCGGCCTCCATCGCGCCACCTCTTGTGGCCGACTTCTCCCGCCCCTCTCTTCTTTCATTCTCCTCCTCTCTCTTCTTTCAAGAACCATGAAATCCAACCTTCATCGCGCCCTCTCTTGTGGCCGAGCAGAACAGAGGGAGAAAAAGAGGGAAGCAGCGGCGGTGGGAACTACGGTTGGAACTGGCGGTGGTGGCGTCGGCGAGGCAGAGGCGACAGGGGGGAAAAAATCTCTCTCCTCTCATTTGTTTTAG

mRNA sequence

ATGCAGTCAGTATCCTCCTCTCTCCTTTCAAGAAACCTGGACTCCGGCCTCCATCGCGCCACCTCTTGTGGCCGACTTCTCCCGCCCCTCTCTTCTTTCATTCTCCTCCTCTCTCTTCTTTCAAGAACCATGAAATCCAACCTTCATCGCGCCCTCTCTTGTGGCCGAGCAGAACAGAGGGAGAAAAAGAGGGAAGCAGCGGCGGTGGGAACTACGGTTGGAACTGGCGGTGGTGGCGTCGGCGAGGCAGAGGCGACAGGGGGGAAAAAATCTCTCTCCTCTCATTTGTTTTAG

Coding sequence (CDS)

ATGCAGTCAGTATCCTCCTCTCTCCTTTCAAGAAACCTGGACTCCGGCCTCCATCGCGCCACCTCTTGTGGCCGACTTCTCCCGCCCCTCTCTTCTTTCATTCTCCTCCTCTCTCTTCTTTCAAGAACCATGAAATCCAACCTTCATCGCGCCCTCTCTTGTGGCCGAGCAGAACAGAGGGAGAAAAAGAGGGAAGCAGCGGCGGTGGGAACTACGGTTGGAACTGGCGGTGGTGGCGTCGGCGAGGCAGAGGCGACAGGGGGGAAAAAATCTCTCTCCTCTCATTTGTTTTAG

Protein sequence

MQSVSSSLLSRNLDSGLHRATSCGRLLPPLSSFILLLSLLSRTMKSNLHRALSCGRAEQREKKREAAAVGTTVGTGGGGVGEAEATGGKKSLSSHLF
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo17552Spo17552gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo17552.1Spo17552.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17552.1.CDS.2Spo17552.1.CDS.2CDS
Spo17552.1.CDS.1Spo17552.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17552.1.exon.2Spo17552.1.exon.2exon
Spo17552.1.exon.1Spo17552.1.exon.1exon


Homology
[Close]
BLAST of Spo17552.1 vs. NCBI nr
Match: gi|902202062|gb|KNA14159.1| (hypothetical protein SOVF_110080 [Spinacia oleracea])

HSP 1 Score: 98.6 bits (244), Expect = 6.400e-18
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1 

		  

Query: 44 MKSNLHRALSCGRAEQREKKREAAAVGTTVGTGGGGVGEAEATGGKKSLSSHLF 98
          MKS+LHRALSCGRAEQREKKREAAAVGTTVGTGGGGVGEAEATG KKSLSSHLF
Sbjct: 1  MKSSLHRALSCGRAEQREKKREAAAVGTTVGTGGGGVGEAEATGKKKSLSSHLF 54
[Close]
BLAST of Spo17552.1 vs. NCBI nr
Match: gi|902168888|gb|KNA07569.1| (hypothetical protein SOVF_170580 [Spinacia oleracea])

HSP 1 Score: 65.5 bits (158), Expect = 6.000e-8
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 1 

		  

Query: 44 MKSNLHRALSCGRAEQREKKREAAAVGTTVGTGGGGVGEAEATGGK 90
          MKS+LHRALSCGRAEQ    REAAAVGTTVGT GGG GEAEATG K
Sbjct: 1  MKSSLHRALSCGRAEQ----REAAAVGTTVGTDGGGAGEAEATGEK 42
[Close]
BLAST of Spo17552.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R5F7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_110080 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.400e-18
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1 

		  

Query: 44 MKSNLHRALSCGRAEQREKKREAAAVGTTVGTGGGGVGEAEATGGKKSLSSHLF 98
          MKS+LHRALSCGRAEQREKKREAAAVGTTVGTGGGGVGEAEATG KKSLSSHLF
Sbjct: 1  MKSSLHRALSCGRAEQREKKREAAAVGTTVGTGGGGVGEAEATGKKKSLSSHLF 54
[Close]
BLAST of Spo17552.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QK06_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_170580 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.200e-8
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 1 

		  

Query: 44 MKSNLHRALSCGRAEQREKKREAAAVGTTVGTGGGGVGEAEATGGK 90
          MKS+LHRALSCGRAEQ    REAAAVGTTVGT GGG GEAEATG K
Sbjct: 1  MKSSLHRALSCGRAEQ----REAAAVGTTVGTDGGGAGEAEATGEK 42
The following BLAST results are available for this feature:
BLAST of Spo17552.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902202062|gb|KNA14159.1|6.4e-1896.3hypothetical protein SOVF_1100... [more]
gi|902168888|gb|KNA07569.1|6.0e-882.6hypothetical protein SOVF_1705... [more]
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BLAST of Spo17552.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9R5F7_SPIOL4.4e-1896.3Uncharacterized protein OS=Spi... [more]
A0A0K9QK06_SPIOL4.2e-882.6Uncharacterized protein OS=Spi... [more]
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BLAST of Spo17552.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo17552.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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