Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGCTTTCTTTTGGCAAGCTGTTCAGCAGACTATTCTCGAAGAAGGAGATGCGTATACTTATGGTAGGTCTCGATGCGGCTGGTAAGACCACCATCTTGTATAAGCTCAAGTTGGGAGAAATTGTCACTACCATCCCAACCATTGGTAAGTACATACATCTTCATTGCATTTCAAGTAATAAGGTAAGATCTTATTCTTGATGCTTTCGTTTTTCTTTATTAAACAGGATTTAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGAGGTCAGGATAAGGTATATACTATATATATTGGTTAGTTGATGCATGCCTCTCTGTACATATTTATTGTAGTAGTCCACCATTTTTAAGAATTACTTGCTTGAACAATCAATGATATTCGAACTGTTTCTGCATTGTTGTTTGGAAGTCAATCCTTGGTAGGAAGCAGAACGAAGAACTCGTTTCTCTCATATAGGAAATTTCTCACTTTCTCAGAGTTGCATTGTTGTTTGGAAGTCAATCCTTGATAGGAAGTCAAACTTAGAGCATTTTTAGCGTCCATGTTATTTGCACGTTTGAGTTGGAGAAGTCTTTAGTGTACGTCCATATCTAAGAAGTCGAGCTACAATTGGGTTAGAGAATACAAGGAGGCATTAACCTCTGACGGGTTGTCTTGATCCCGTGACTACTGACTAGCATTGCATGCTCAAATTGGTGAAGCAAAATGCTGAGCTTTCTCAATTCAGTGCTGCAATTTCTGTGTAAATTTAGTATCTTTCTCATCCTTAATAGTATCTCTATTGCACTAGACTGTGAATTAACCTGGAAAAGATAGAATGTTACTAATTGCATTCAGAAGAATCATTTGGGATTACGGAGTATATTTTAATACTCATCATTCAATCACCAATTTGAAATAATGAAATTAAATACTTGGATTTCAGATTCGTCCGTTGTGGAGACACTACTTCCAGAACACACAAGGACTCATCTTTGTGGTTGACAGTAATGATAGAGATCGTGTTGTTGAAGCGAGGGATGAGCTTCACCGGATGCTGAATGAGGTAGTTAATTACCCTCTATTACAAATTAACGAGCAATGCACTGCACTGCACTCCATTGCAATGATCACTGAACTGGTTGATTGGGTCCCTTTTTGCAGGATGAACTAAAGGATGCAGTCCTACTAGTGTTTGCTAACAAACAGGATCTTCCAAATGCGATGAATGCAGCAGAAATCACCGACAAGCTCGGTCTCCACTCCCTCCGTCAACGACACTGGTAAATACACTACCCTCTTCTCTCCTCAATCTTGTCCAGTCCAATCCAATCCAATCCAATCCAACCATTCCCCTATCAAGTATCAACAAAATGCCTTATAAGATTACGCTAGACCTGATTGTGCTGGGCGGGCCGGGTTTGTGCTGGGTCGAGACATACAAATCAGCCCATCATGTTGGGCCGATTTTTATGTGCCCAAACCCGCTTTTCCGAGCTTAAAACACCGGGCTTTCGGCCCCGGCCAAATTTATAACAAAAAATGTAGTTTTATGTTGTCCAAATTCCAAAACCGGACAAAATTGTTAAAATTTCTGGCCGAGACGGTCGGGGCCCGAGAATCGGACCTAAAATAATCCCTTGCTCTGAGCAAAATCAAAGTACTAAAACTACTTGAACAGGTACATCCAGAGTACATGTGCAACATCAGGTGAAGGGCTGTATGAGGGTCTAGACTGGTTGTCCAACAACATAGCAAGCAAGGTAAGCTGCAAGCCTGCAATACATGCAATTCACACTCATCAGTGATTATTTAATGGCTTACATCTAATTTCATTCGATTGTCTTGTTCTATTCACAGGCTTAAATGAAAGCATCTCTGGTTCACATTTAGAACGAAGATAGTTGAGTTTTCACCAGCATTTACAGGACTTTTGTTATTACATTACGTTGCAAGTTTTTCATAGCTTAATGTTGTTCAGTGACAGTTTAAGCCATTTGCTTCCTGTAGTCTAAGTTTGAGACATGAGATTGATTAATCAATTACTTGTAATATTATCTTGTCAGAGCTGTTATAGTCCTCTGTCATTCTTTAGAACCTTATTGTAACTCCTTTCATTTTAAAGTTGAAACCATGATAAAATTTGCAGAATTTGGACCAAAAGCTTAAGCTGATGGTTGAAGCCCCAATATTAGTTTTATACTCTATCACGCCCCCTCACATGAAAGCCCTTTGAGCTTGAAGTGTGGATGCAGCATAGGCCTTCTCATACCTAGCGCGAAATATTCCACTTTGAAAGGAGGGGTGGATGAGATTCGAACCCGTGACCTTTGCGTCACGTTGGCTCTGATACCATGTCAAGGGACCAACTCAATCAAAAGCTTAAGCTGATGGTTGAAGCCCCAATATTAGTTTTATACTCTATCAAC ATGGGGCTTTCTTTTGGCAAGCTGTTCAGCAGACTATTCTCGAAGAAGGAGATGCGTATACTTATGGTAGGTCTCGATGCGGCTGGTAAGACCACCATCTTGTATAAGCTCAAGTTGGGAGAAATTGTCACTACCATCCCAACCATTGGATTTAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGAGGTCAGGATAAGATTCGTCCGTTGTGGAGACACTACTTCCAGAACACACAAGGACTCATCTTTGTGGTTGACAGTAATGATAGAGATCGTGTTGTTGAAGCGAGGGATGAGCTTCACCGGATGCTGAATGAGGATGAACTAAAGGATGCAGTCCTACTAGTGTTTGCTAACAAACAGGATCTTCCAAATGCGATGAATGCAGCAGAAATCACCGACAAGCTCGGTCTCCACTCCCTCCGTCAACGACACTGGTACATCCAGAGTACATGTGCAACATCAGGTGAAGGGCTGTATGAGGGTCTAGACTGGTTGTCCAACAACATAGCAAGCAAGGCTTAAATGAAAGCATCTCTGGTTCACATTTAGAACGAAGATAGTTGAGTTTTCACCAGCATTTACAGGACTTTTGTTATTACATTACGTTGCAAGTTTTTCATAGCTTAATGTTGTTCAGTGACAGTTTAAGCCATTTGCTTCCTGTAGTCTAAGTTTGAGACATGAGATTGATTAATCAATTACTTGTAATATTATCTTGTCAGAGCTGTTATAGTCCTCTGTCATTCTTTAGAACCTTATTGTAACTCCTTTCATTTTAAAGTTGAAACCATGATAAAATTTGCAGAATTTGGACCAAAAGCTTAAGCTGATGGTTGAAGCCCCAATATTAGTTTTATACTCTATCACGCCCCCTCACATGAAAGCCCTTTGAGCTTGAAGTGTGGATGCAGCATAGGCCTTCTCATACCTAGCGCGAAATATTCCACTTTGAAAGGAGGGGTGGATGAGATTCGAACCCGTGACCTTTGCGTCACGTTGGCTCTGATACCATGTCAAGGGACCAACTCAATCAAAAGCTTAAGCTGATGGTTGAAGCCCCAATATTAGTTTTATACTCTATCAAC ATGGGGCTTTCTTTTGGCAAGCTGTTCAGCAGACTATTCTCGAAGAAGGAGATGCGTATACTTATGGTAGGTCTCGATGCGGCTGGTAAGACCACCATCTTGTATAAGCTCAAGTTGGGAGAAATTGTCACTACCATCCCAACCATTGGATTTAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGAGGTCAGGATAAGATTCGTCCGTTGTGGAGACACTACTTCCAGAACACACAAGGACTCATCTTTGTGGTTGACAGTAATGATAGAGATCGTGTTGTTGAAGCGAGGGATGAGCTTCACCGGATGCTGAATGAGGATGAACTAAAGGATGCAGTCCTACTAGTGTTTGCTAACAAACAGGATCTTCCAAATGCGATGAATGCAGCAGAAATCACCGACAAGCTCGGTCTCCACTCCCTCCGTCAACGACACTGGTACATCCAGAGTACATGTGCAACATCAGGTGAAGGGCTGTATGAGGGTCTAGACTGGTTGTCCAACAACATAGCAAGCAAGGCTTAA MGLSFGKLFSRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELKDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo17583.1 vs. NCBI nr
Match: gi|902223836|gb|KNA19609.1| (hypothetical protein SOVF_060060 [Spinacia oleracea]) HSP 1 Score: 366.7 bits (940), Expect = 2.300e-98 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo17583.1 vs. NCBI nr
Match: gi|320089750|pdb|3AQ4|A (Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b) HSP 1 Score: 364.4 bits (934), Expect = 1.200e-97 Identity = 179/181 (98.90%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo17583.1 vs. NCBI nr
Match: gi|15226521|ref|NP_182239.1| (ADP-ribosylation factor 1 [Arabidopsis thaliana]) HSP 1 Score: 364.4 bits (934), Expect = 1.200e-97 Identity = 179/181 (98.90%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo17583.1 vs. NCBI nr
Match: gi|565468076|ref|XP_006291918.1| (hypothetical protein CARUB_v10018102mg [Capsella rubella]) HSP 1 Score: 363.2 bits (931), Expect = 2.600e-97 Identity = 178/181 (98.34%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo17583.1 vs. NCBI nr
Match: gi|326510419|dbj|BAJ87426.1| (predicted protein [Hordeum vulgare subsp. vulgare]) HSP 1 Score: 363.2 bits (931), Expect = 2.600e-97 Identity = 178/181 (98.34%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo17583.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RL33_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_060060 PE=3 SV=1) HSP 1 Score: 366.7 bits (940), Expect = 1.600e-98 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo17583.1 vs. UniProtKB/TrEMBL
Match: A0A078DZX3_BRANA (BnaC04g21380D protein OS=Brassica napus GN=BnaC04g21380D PE=3 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 1.800e-97 Identity = 178/181 (98.34%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo17583.1 vs. UniProtKB/TrEMBL
Match: R0FRI1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10018102mg PE=3 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 1.800e-97 Identity = 178/181 (98.34%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo17583.1 vs. UniProtKB/TrEMBL
Match: V4LMY9_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10001656mg PE=3 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 1.800e-97 Identity = 178/181 (98.34%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo17583.1 vs. UniProtKB/TrEMBL
Match: Q6EFV6_BRAJU (ARF-like small GTPase OS=Brassica juncea PE=2 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 1.800e-97 Identity = 178/181 (98.34%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo17583.1 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2) HSP 1 Score: 364.4 bits (934), Expect = 7.300e-100 Identity = 179/181 (98.90%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo17583.1 vs. ExPASy Swiss-Prot
Match: ARF2A_ARATH (ADP-ribosylation factor 2-A OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=2) HSP 1 Score: 360.5 bits (924), Expect = 1.100e-98 Identity = 177/181 (97.79%), Postives = 179/181 (98.90%), Query Frame = 1
BLAST of Spo17583.1 vs. ExPASy Swiss-Prot
Match: ARF2B_ARATH (ADP-ribosylation factor 2-B OS=Arabidopsis thaliana GN=ARF2-B PE=2 SV=1) HSP 1 Score: 360.5 bits (924), Expect = 1.100e-98 Identity = 177/181 (97.79%), Postives = 179/181 (98.90%), Query Frame = 1
BLAST of Spo17583.1 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3) HSP 1 Score: 359.8 bits (922), Expect = 1.800e-98 Identity = 177/181 (97.79%), Postives = 180/181 (99.45%), Query Frame = 1
BLAST of Spo17583.1 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3) HSP 1 Score: 358.6 bits (919), Expect = 4.000e-98 Identity = 176/181 (97.24%), Postives = 180/181 (99.45%), Query Frame = 1
BLAST of Spo17583.1 vs. TAIR (Arabidopsis)
Match: AT2G47170.1 (Ras-related small GTP-binding family protein) HSP 1 Score: 364.4 bits (934), Expect = 4.100e-101 Identity = 179/181 (98.90%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo17583.1 vs. TAIR (Arabidopsis)
Match: AT3G62290.1 (ADP-ribosylation factor A1E) HSP 1 Score: 362.1 bits (928), Expect = 2.000e-100 Identity = 177/181 (97.79%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo17583.1 vs. TAIR (Arabidopsis)
Match: AT1G10630.1 (ADP-ribosylation factor A1F) HSP 1 Score: 362.1 bits (928), Expect = 2.000e-100 Identity = 178/181 (98.34%), Postives = 180/181 (99.45%), Query Frame = 1
BLAST of Spo17583.1 vs. TAIR (Arabidopsis)
Match: AT1G70490.1 (Ras-related small GTP-binding family protein) HSP 1 Score: 360.5 bits (924), Expect = 5.900e-100 Identity = 177/181 (97.79%), Postives = 179/181 (98.90%), Query Frame = 1
BLAST of Spo17583.1 vs. TAIR (Arabidopsis)
Match: AT1G23490.1 (ADP-ribosylation factor 1) HSP 1 Score: 360.5 bits (924), Expect = 5.900e-100 Identity = 177/181 (97.79%), Postives = 179/181 (98.90%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17583.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo17583.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo17583.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo17583.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|