Spo17731.1 (mRNA) | SpinachBase

Overview


Name	Spo17731.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RNA-binding family protein
Location	SpoScf_02688 : 29144 .. 33348 (-)
Sequence length	723

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAAGAAAGAAGGAGGGAGAGGAGAGGAGAGAGAAAATGGGGGCGTAGGAGATTGAGTGAGATCTAGGGTTTGCTGAAAAACCATCAATGGAAGAACCACGGGTGAAAGGAAAAGAAGAAGGCAAGTAGGAAGTAGGGAGGAGGGAGAAGGGAGGCACCGAGGCAAGGAGGAGTGAACACGAGAGTTAGAGGAGGGCACAAATGATAAATGATAAAAATCTTAAGGGTTTTTTAGGCAATACACTATTGGATGAATAGTGAAATCATATTCCTTGCTTTTAGGTTGTAAGATATGTGACCACATATATCCGGATGTTCTCATGTTCTCCCTTACACACGTCCAAATTATCTTTGTTGGATTTGGTGTATATATTTGCAAATATATCTTCTGTTCTAAACCCAAAATATTAATGTTCTTATTGGTGATTACTGGTAAACTCAAACCTTCATCTTTTTGGAAAACTAAATAGGTGGTTGCTACTGGAGTTGGAACTTGGGTGATGGACATGGATGGCTGAAGGGTTCTACTTATAATACGTTCTAGATATTATTGAATCTGGTTGATGATATTCATTACTGTAAGTAGGATTAACCACTTTGAATCATAACATGTATCCTCAATAGGAATGACTGCTAACCTTCTCCTTGTCTCAGTTGCATTTTTTTTCGAGGTCAGTATGATTTACTTCATTTTGTCGTATGCGTAATATTCATCAGATCATGGGGCTGGCCACGGCCAAAGCCCCAAGTGAGGAGAAAATCATTATTTTTCCAAGAAAACATTTTATAGCCTTTATCTTATTGTTTGACCTATGGTTGTGCATGATTTCCTTTTCTTTCTAAGGCAGACAAAAACCTGATATGTTGATTCTATTGTCTGGCAACACATAAATTCTTTAAAATTTGACTGTTGAATGCCTATTGTTGTTACATTTTTTCACAAGATGCCATACCCAGTGACTCTGTTTTGTACAACATGTTCGATATACTCTCTGCAGTAGGGCTCGTGGTATGCTTCAGGATGTAAATTCTTCCCGACCCCCAAATTAAGTACATGGAAAAATAGATTTGATGAATAATTAAGGCCTCTTCAATTTGTGGTGGTTTTCATTTTATTTGGGAATGGGAACCATTCCCTAGATTATTATGTCTGAGTTATGCCAATGAATTATTGTTTAAACCATTTTATACAAGTAGTAAAAATTTCGAGAAAGAAAGTATAATAAAAGTCTCCTCGAGGCAACATGGGTATTAAGGTAGATCTTTAAGGTTCTTTAAGAGTAGCTGCCATATTGTGAATTCTAGACCCATAATATGGACTATTCCTTTCAAGAAAGAAAATTTGATGGGAGTCTAATTGAGGCAGTATTGGTTTCAATTTAATCGAATCCTAAATTCCTAAGACAAGACGATAACGGGATATTGCTTAATTTCTACTTTCTTTTTTGTATTTGATTGCGGGGTAAGGGCTATCAAATCATCATTTTATTTGGGTTCTGCTATATTGGATTGTGGGTAGTGATTTTCAGTCGTTATTTTATATGCGTCTCTAATTATGGTTATTTTCCAATGTCGATGGTTAAATTATGGTTTTGGTATCCTTTGAATGTCGAAACAAAACAATATTAGCCACCAAACGGAAAATTTAATTCCACTTTTCTGGAGTGACAAAGTATGTTGGTTGTAAAGCTAGCATTAACGCATGGTGTTTTTTGCCTCAGGCAGTTCGTACGCTTTGGATTGGAGATCTGCAGTATTCGATGGACGAGATTATATTTGCAATTGTTTTGCCCATACCGGCGAGGTATATCAAATCTAATGTTTATAATTGTTTATTTTCATCGATTAAGTTCTTTGATTTGGCGATTTCCTTCTAAGTTTGTAACTTTTTTGATTTTTTATTGATGCCATGAAAAGATCTGATATGTCTATATTGTGGATATGTGTTTAATTTTTAGAAGTCATGTGATGATTCCAGTGTAATATCATCATTGAATATTTTAGGATTATGTCTCGTACTTATTAATTGTTTTATGTGAGGTAACAAAGATTGTTTAGAATAAAGATAATGAGGATAAGTGTAGGGGGTGTAGTTTTTTGTGTTGAAGTTTCTGGAAATTTTAGGATTTAAGCATTTACTTTTCTTGCCTGCACTGTGGCCGGAAGGTGCTTCCTTTGGTGTTTATGAAGTGTAGTAATTGAAATGGTTTTTCCCTGTAAATCTAGTCAAGACGGAGGTCTTGAAAGTTTTGGATGTAATTTGTTTCTCATGTTAAGAAAAAAAAAGTGGAAAGATGGATATTGTCGGGCAAAACGACTCTTGAGAGGTCTAGATGTACTCGGTTTTCCCTGAAAATAACTTTGAAGTCATTAAGTTTTGTAGAAGACTTTTATTCAAAGTTGCAACTAGCTTACAACATTGTTTAGGTTTTTTTTGTAAGTCATGATCTTCAAAATTAGGAAATGTTTGAGGTTTTTGGAGTTGATTGAGCCTGTAAGTGATGTTAAGGGTCAAGGACCTGTTTTTGGTGGAAAATTAAACTCATTTTTTCTTTGATTGGATTAGTTGGTGAATGTATTTCTACTCTATAAGTGAGATATGTTAAATCCTTGTGTTCGCTTCCATGTTGCAGCTTAACTTTTAACAAGCTTAGGCTCTTAAGCGTATTCACTCTCTTAACTACTAATGCTCCTAAATCTTGCAGCTTTCCATGTCAATATCGTTCGTAATATACAAACCATGCAGTTAGAGTGTTACGGATTTCTTGAGTTTACCACTCATGTTACTGCTGGGAGGATTCTGCAGACTCTGAATAATACTTTGATGCCAAATGTTGAGCAAAACTACAGACCGGATTGGGTTTTCTTTGGAACTGGTGAGAAATGGGGAGAGGATGCTTTTGATTATACAATTTTGGTCAGAGATTTAGCAGCAGATGTTACTGATTACACATTGCAAGAAACTTTTAGAGCTCGTTATCTGTCAATTAAAGGTGCTAAGGTTGTCAATTTGTCATAGATAGACAAACTGGTAGAGCTAAGGGTTATGGATTTGTTTGTTTCACCGATGAAAATGAACAAGTACGTGTCATGTCAGAGATGAATGGAATGGTGTGTCCAGGGCGTGCAATGCGTATCGGAGCTGATGCAACAAGAAAAGTGTTGGTGGAACATGTATGTGTTAGTTAGATTGTTTAACATGACTTCAAATGGCAGTATTTTATTTTATCCATGTGCATGAACTTCTCTGATTTTATGAATTTGTATAGTATCTTCATTTTTCTGGTGTATGTTATTCATAACCTAGAGTTGGTTAGTTGGGAAGCATGGTGATTGGTTTCTCTTTATATTGGTTATTGTTATTTGGGTCTCCTACATTCACTTGAAGATGCGCATAAATTTAGTTCCATTGCTTTCCTTTCAGAATTTGGGAACAATTAATTGCCAACTGAAAATCTTATACAACTCCCATTGTCTCAAAGCAGGGCGTCAAGAGGCTCTGCCATTTAGGGGCCTGGGGCTGAATTCAGACGAAATGGTTACCCCCTTAGTATGTTGCCTTGTGCAGGTCAGTAATGTCAAAAAATTTCCATTTCACGCAGCTTCCAGTGCTAAAAGTTACTCTTCCATTCAGTTTAGTATATTATTAAAAAAATACAGTTGTTAGTTTCGTTCAATTTCATTACAATTCAAGATGTCATTAATTTAATCGTATTTTTTTCGCTTAATTAATAATTTTCTTAATGATCCTTTGCCCACTTTTAGTACTTTGATATTATTATTTATCAAGTCCTAGCTTGTATTCTTTTTCTTCTTTTATAGTCAGATTTATCTTGCCTGCATTTGCTTCCTTTTAAAAAAACATCTACATGAGAGTGTGTTCTAATTGAGTTATGAACCTCTTTAAACACTCATTAGTTTAGTTGTTGAGTTTTATTGGTTCGTACATTATTATCATCCTCTTGGGGTGCTTAACTAGGTATTTAGTTCCAATCATACTTGATACAACTGAACTAATTTTGCATCGGGCGCAAAGAACAAGCACATGCCGTCATCAAGGCTTCAATGGTCCAACAATCGCAATTCTCTTCTAGGTATATGGATAGATATATTGTAAGTTGTTTACATGACTTTTTACATTTTTCTAACTGAAAGGGGATTGATTTACTACAATGGTCTAGGCTATCTCCTATGTATTAA

mRNA sequence

ATGGATAAAGAAAGAAGGAGGGAGAGGAGAGGAGAGAGAAAATGGGGGCGCAGTTCGTACGCTTTGGATTGGAGATCTGCAGTATTCGATGGACGAGATTATATTTGCAATTGTTTTGCCCATACCGGCGAGTTAGAGTGTTACGGATTTCTTGAGTTTACCACTCATGTTACTGCTGGGAGGATTCTGCAGACTCTGAATAATACTTTGATGCCAAATGTTGAGCAAAACTACAGACCGGATTGGGTTTTCTTTGGAACTGGTGAGAAATGGGGAGAGGATGCTTTTGATTATACAATTTTGGTCAGAGATTTAGCAGCAGATGTTACTGATTACACATTGCAAGAAACTTTTAGAGCTCGTTATCTGTCAATTAAAGATAGACAAACTGGTAGAGCTAAGGGTTATGGATTTGTTTGTTTCACCGATGAAAATGAACAAGTACGTGTCATGTCAGAGATGAATGGAATGGTGTGTCCAGGGCGTGCAATGCGTATCGGAGCTGATGCAACAAGAAAAGTGTTGGTGGAACATAATTTGGGAACAATTAATTGCCAACTGAAAATCTTATACAACTCCCATTGTCTCAAAGCAGGGCGTCAAGAGGCTCTGCCATTTAGGGGCCTGGGGCTGAATTCAGACGAAATGGTTACCCCCTTAGTATGTTGCCTTGTGCAGGGGATTGATTTACTACAATGGTCTAGGCTATCTCCTATGTATTAA

Coding sequence (CDS)

ATGGATAAAGAAAGAAGGAGGGAGAGGAGAGGAGAGAGAAAATGGGGGCGCAGTTCGTACGCTTTGGATTGGAGATCTGCAGTATTCGATGGACGAGATTATATTTGCAATTGTTTTGCCCATACCGGCGAGTTAGAGTGTTACGGATTTCTTGAGTTTACCACTCATGTTACTGCTGGGAGGATTCTGCAGACTCTGAATAATACTTTGATGCCAAATGTTGAGCAAAACTACAGACCGGATTGGGTTTTCTTTGGAACTGGTGAGAAATGGGGAGAGGATGCTTTTGATTATACAATTTTGGTCAGAGATTTAGCAGCAGATGTTACTGATTACACATTGCAAGAAACTTTTAGAGCTCGTTATCTGTCAATTAAAGATAGACAAACTGGTAGAGCTAAGGGTTATGGATTTGTTTGTTTCACCGATGAAAATGAACAAGTACGTGTCATGTCAGAGATGAATGGAATGGTGTGTCCAGGGCGTGCAATGCGTATCGGAGCTGATGCAACAAGAAAAGTGTTGGTGGAACATAATTTGGGAACAATTAATTGCCAACTGAAAATCTTATACAACTCCCATTGTCTCAAAGCAGGGCGTCAAGAGGCTCTGCCATTTAGGGGCCTGGGGCTGAATTCAGACGAAATGGTTACCCCCTTAGTATGTTGCCTTGTGCAGGGGATTGATTTACTACAATGGTCTAGGCTATCTCCTATGTATTAA

Protein sequence

MDKERRRERRGERKWGRSSYALDWRSAVFDGRDYICNCFAHTGELECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYRPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIKDRQTGRAKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVLVEHNLGTINCQLKILYNSHCLKAGRQEALPFRGLGLNSDEMVTPLVCCLVQGIDLLQWSRLSPMY

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo17731	Spo17731	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo17731.1	Spo17731.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17731.1.CDS.6	Spo17731.1.CDS.6	CDS
Spo17731.1.CDS.5	Spo17731.1.CDS.5	CDS
Spo17731.1.CDS.4	Spo17731.1.CDS.4	CDS
Spo17731.1.CDS.3	Spo17731.1.CDS.3	CDS
Spo17731.1.CDS.2	Spo17731.1.CDS.2	CDS
Spo17731.1.CDS.1	Spo17731.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17731.1.exon.6	Spo17731.1.exon.6	exon
Spo17731.1.exon.5	Spo17731.1.exon.5	exon
Spo17731.1.exon.4	Spo17731.1.exon.4	exon
Spo17731.1.exon.3	Spo17731.1.exon.3	exon
Spo17731.1.exon.2	Spo17731.1.exon.2	exon
Spo17731.1.exon.1	Spo17731.1.exon.1	exon

Homology

[Close]

BLAST of Spo17731.1 vs. NCBI nr
Match: gi|902184772|gb|KNA10364.1| (hypothetical protein SOVF_145010 isoform A [Spinacia oleracea])

HSP 1 Score: 223.4 bits (568), Expect = 4.200e-55
Identity = 115/161 (71.43%), Postives = 123/161 (76.40%), Query Frame = 1


		  
Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +YI NCFA TGEL              ECYGFLEFTTH  A RILQTLNNTLMPNVEQNY
Sbjct: 98  NYIRNCFAPTGELSNVKIIRNKQTMQSECYGFLEFTTHAAAERILQTLNNTLMPNVEQNY 157

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W F+GTGEK GEDA DYTI V DLAADVTDYTLQETFR RY S+K      DRQTGR
Sbjct: 158 RLNWAFYGTGEKRGEDASDYTIFVGDLAADVTDYTLQETFRVRYPSVKGAKVVIDRQTGR 217

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRK 174
           AKGYGFV F+DE+EQVR MSEMNGM+C GRAMRIGA A +K
Sbjct: 218 AKGYGFVRFSDESEQVRAMSEMNGMMCSGRAMRIGAAANKK 258

[Close]

BLAST of Spo17731.1 vs. NCBI nr
Match: gi|30524689|emb|CAC85246.1| (salt tolerance protein 6 [Beta vulgaris])

HSP 1 Score: 204.5 bits (519), Expect = 2.000e-49
Identity = 108/177 (61.02%), Postives = 123/177 (69.49%), Query Frame = 1


		  
Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +YI  CFA +GEL              ECYGF+EF+TH  A RILQT NNTLMPNVEQNY
Sbjct: 4   NYIRTCFAQSGELVNVKIIRNKQTMQSECYGFIEFSTHAAAERILQTYNNTLMPNVEQNY 63

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W F+G+GEK GEDA DYTI V DLA DVTDYTLQETFR RY S+K      DR T R
Sbjct: 64  RLNWAFYGSGEKRGEDASDYTIFVGDLAPDVTDYTLQETFRVRYPSVKGAKVVIDRLTSR 123

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVL-----VEHNLGTIN 185
           +KGYGFV F DE+EQ R MSEMNGM+C GRAMRIGA A +K +      ++N GT N
Sbjct: 124 SKGYGFVRFGDESEQARAMSEMNGMMCLGRAMRIGAAANKKSVGGTASYQNNQGTPN 180

[Close]

BLAST of Spo17731.1 vs. NCBI nr
Match: gi|731369905|ref|XP_010665562.1| (PREDICTED: polyadenylate-binding protein RBP45-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 204.5 bits (519), Expect = 2.000e-49
Identity = 108/177 (61.02%), Postives = 123/177 (69.49%), Query Frame = 1


		  
Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +YI  CFA +GEL              ECYGF+EF+TH  A RILQT NNTLMPNVEQNY
Sbjct: 96  NYIRTCFAQSGELVNVKIIRNKQTMQSECYGFIEFSTHAAAERILQTYNNTLMPNVEQNY 155

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W F+G+GEK GEDA DYTI V DLA DVTDYTLQETFR RY S+K      DR T R
Sbjct: 156 RLNWAFYGSGEKRGEDASDYTIFVGDLAPDVTDYTLQETFRVRYPSVKGAKVVIDRLTSR 215

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVL-----VEHNLGTIN 185
           +KGYGFV F DE+EQ R MSEMNGM+C GRAMRIGA A +K +      ++N GT N
Sbjct: 216 SKGYGFVRFGDESEQARAMSEMNGMMCLGRAMRIGAAANKKSVGGTASYQNNQGTPN 272

[Close]

BLAST of Spo17731.1 vs. NCBI nr
Match: gi|629104705|gb|KCW70174.1| (hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis])

HSP 1 Score: 180.3 bits (456), Expect = 4.100e-42
Identity = 100/204 (49.02%), Postives = 120/204 (58.82%), Query Frame = 1


		  
Query: 34  YICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYR 93
           Y+ NCFAH+GE+              E YGF+EF T   A RILQT N TLMPN +QN+R
Sbjct: 79  YLLNCFAHSGEVLSAKVIRNKQTALPEGYGFIEFMTRAAAERILQTYNGTLMPNSDQNFR 138

Query: 94  PDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGRA 153
            +W   G GE+  ++  DYTI V DLAADVTD+ LQETFRA Y S+K      DR TGR+
Sbjct: 139 LNWATLGPGERRQDEGPDYTIFVGDLAADVTDHMLQETFRAHYPSVKGAKIVIDRTTGRS 198

Query: 154 KGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVLVEHNLGTINCQLKILYNS 213
           KGYGFV F DE EQ+R M+EMNGM C  R MRIG  A +K +                  
Sbjct: 199 KGYGFVRFGDETEQLRAMTEMNGMYCSSRPMRIGPAANKKPIATQQ-------------- 258

Query: 214 HCLKAGRQEALPFRGLGLNSDEMV 218
              ++GRQEAL   GL L S EM+
Sbjct: 259 --YQSGRQEALILEGLELISAEMI 266

[Close]

BLAST of Spo17731.1 vs. NCBI nr
Match: gi|976901589|gb|KVH89625.1| (Nucleotide-binding, alpha-beta plait [Cynara cardunculus var. scolymus])

HSP 1 Score: 175.3 bits (443), Expect = 1.300e-40
Identity = 100/204 (49.02%), Postives = 119/204 (58.33%), Query Frame = 1


		  
Query: 34  YICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYR 93
           Y+ +CFA TGE+              E YGF+EF     A R LQ  N TLMPNVEQ +R
Sbjct: 89  YLLSCFAQTGEVVSAKVIRNKQSGQSEGYGFIEFANRAAAERHLQAYNGTLMPNVEQLFR 148

Query: 94  PDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGRA 153
            +W  FG GEK  +D  DYT+ V DLAADVTDYTLQETFRA Y S+K      DR TGR 
Sbjct: 149 LNWATFGAGEKRQDDTPDYTVFVGDLAADVTDYTLQETFRAHYPSVKGAKVVTDRLTGRT 208

Query: 154 KGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVLVEHNLGTINCQLKILYNS 213
           KGYGFV F DE+EQVR M+EMNG +C  R MRIG  A +K     N+G            
Sbjct: 209 KGYGFVKFGDESEQVRAMTEMNGRLCSTRPMRIGPAANKK-----NVG-----------G 268

Query: 214 HCLKAGRQEALPFRGLGLNSDEMV 218
                G QEAL ++GL + S E++
Sbjct: 269 QQYPKGHQEALSYKGLAMISAEIL 276

[Close]

BLAST of Spo17731.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QSW8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_145010 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 3.000e-55
Identity = 115/161 (71.43%), Postives = 123/161 (76.40%), Query Frame = 1


		  
Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +YI NCFA TGEL              ECYGFLEFTTH  A RILQTLNNTLMPNVEQNY
Sbjct: 98  NYIRNCFAPTGELSNVKIIRNKQTMQSECYGFLEFTTHAAAERILQTLNNTLMPNVEQNY 157

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W F+GTGEK GEDA DYTI V DLAADVTDYTLQETFR RY S+K      DRQTGR
Sbjct: 158 RLNWAFYGTGEKRGEDASDYTIFVGDLAADVTDYTLQETFRVRYPSVKGAKVVIDRQTGR 217

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRK 174
           AKGYGFV F+DE+EQVR MSEMNGM+C GRAMRIGA A +K
Sbjct: 218 AKGYGFVRFSDESEQVRAMSEMNGMMCSGRAMRIGAAANKK 258

[Close]

BLAST of Spo17731.1 vs. UniProtKB/TrEMBL
Match: Q84LL7_BETVU (Salt tolerance protein 6 OS=Beta vulgaris GN=sato6 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.400e-49
Identity = 108/177 (61.02%), Postives = 123/177 (69.49%), Query Frame = 1


		  
Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +YI  CFA +GEL              ECYGF+EF+TH  A RILQT NNTLMPNVEQNY
Sbjct: 4   NYIRTCFAQSGELVNVKIIRNKQTMQSECYGFIEFSTHAAAERILQTYNNTLMPNVEQNY 63

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W F+G+GEK GEDA DYTI V DLA DVTDYTLQETFR RY S+K      DR T R
Sbjct: 64  RLNWAFYGSGEKRGEDASDYTIFVGDLAPDVTDYTLQETFRVRYPSVKGAKVVIDRLTSR 123

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVL-----VEHNLGTIN 185
           +KGYGFV F DE+EQ R MSEMNGM+C GRAMRIGA A +K +      ++N GT N
Sbjct: 124 SKGYGFVRFGDESEQARAMSEMNGMMCLGRAMRIGAAANKKSVGGTASYQNNQGTPN 180

[Close]

BLAST of Spo17731.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E0W4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g200490 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.400e-49
Identity = 108/177 (61.02%), Postives = 123/177 (69.49%), Query Frame = 1


		  
Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +YI  CFA +GEL              ECYGF+EF+TH  A RILQT NNTLMPNVEQNY
Sbjct: 96  NYIRTCFAQSGELVNVKIIRNKQTMQSECYGFIEFSTHAAAERILQTYNNTLMPNVEQNY 155

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W F+G+GEK GEDA DYTI V DLA DVTDYTLQETFR RY S+K      DR T R
Sbjct: 156 RLNWAFYGSGEKRGEDASDYTIFVGDLAPDVTDYTLQETFRVRYPSVKGAKVVIDRLTSR 215

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVL-----VEHNLGTIN 185
           +KGYGFV F DE+EQ R MSEMNGM+C GRAMRIGA A +K +      ++N GT N
Sbjct: 216 SKGYGFVRFGDESEQARAMSEMNGMMCLGRAMRIGAAANKKSVGGTASYQNNQGTPN 272

[Close]

BLAST of Spo17731.1 vs. UniProtKB/TrEMBL
Match: A0A059BW09_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03462 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.900e-42
Identity = 100/204 (49.02%), Postives = 120/204 (58.82%), Query Frame = 1


		  
Query: 34  YICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYR 93
           Y+ NCFAH+GE+              E YGF+EF T   A RILQT N TLMPN +QN+R
Sbjct: 79  YLLNCFAHSGEVLSAKVIRNKQTALPEGYGFIEFMTRAAAERILQTYNGTLMPNSDQNFR 138

Query: 94  PDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGRA 153
            +W   G GE+  ++  DYTI V DLAADVTD+ LQETFRA Y S+K      DR TGR+
Sbjct: 139 LNWATLGPGERRQDEGPDYTIFVGDLAADVTDHMLQETFRAHYPSVKGAKIVIDRTTGRS 198

Query: 154 KGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVLVEHNLGTINCQLKILYNS 213
           KGYGFV F DE EQ+R M+EMNGM C  R MRIG  A +K +                  
Sbjct: 199 KGYGFVRFGDETEQLRAMTEMNGMYCSSRPMRIGPAANKKPIATQQ-------------- 258

Query: 214 HCLKAGRQEALPFRGLGLNSDEMV 218
              ++GRQEAL   GL L S EM+
Sbjct: 259 --YQSGRQEALILEGLELISAEMI 266

[Close]

BLAST of Spo17731.1 vs. UniProtKB/TrEMBL
Match: A0A103XF54_CYNCS (Nucleotide-binding, alpha-beta plait OS=Cynara cardunculus var. scolymus GN=Ccrd_008393 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 9.200e-41
Identity = 100/204 (49.02%), Postives = 119/204 (58.33%), Query Frame = 1


		  
Query: 34  YICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYR 93
           Y+ +CFA TGE+              E YGF+EF     A R LQ  N TLMPNVEQ +R
Sbjct: 89  YLLSCFAQTGEVVSAKVIRNKQSGQSEGYGFIEFANRAAAERHLQAYNGTLMPNVEQLFR 148

Query: 94  PDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGRA 153
            +W  FG GEK  +D  DYT+ V DLAADVTDYTLQETFRA Y S+K      DR TGR 
Sbjct: 149 LNWATFGAGEKRQDDTPDYTVFVGDLAADVTDYTLQETFRAHYPSVKGAKVVTDRLTGRT 208

Query: 154 KGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVLVEHNLGTINCQLKILYNS 213
           KGYGFV F DE+EQVR M+EMNG +C  R MRIG  A +K     N+G            
Sbjct: 209 KGYGFVKFGDESEQVRAMTEMNGRLCSTRPMRIGPAANKK-----NVG-----------G 268

Query: 214 HCLKAGRQEALPFRGLGLNSDEMV 218
                G QEAL ++GL + S E++
Sbjct: 269 QQYPKGHQEALSYKGLAMISAEIL 276

[Close]

BLAST of Spo17731.1 vs. ExPASy Swiss-Prot
Match: RBP45_NICPL (Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.100e-39
Identity = 86/161 (53.42%), Postives = 107/161 (66.46%), Query Frame = 1


		  
Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +Y+  CF HTGEL              E YGFLEF +H  A  ILQT N TLMPNVEQN+
Sbjct: 98  NYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNF 157

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W   G GE+  +D+ ++TI V DLAADVTDY LQETF++ Y S++      DR TGR
Sbjct: 158 RMNWASLGAGER-RDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGR 217

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRK 174
           +KGYGFV F DE+EQ+R M+EMNG++C  R MRIG  A +K
Sbjct: 218 SKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKK 257

[Close]

BLAST of Spo17731.1 vs. ExPASy Swiss-Prot
Match: RB45B_ARATH (Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.300e-35
Identity = 81/162 (50.00%), Postives = 105/162 (64.81%), Query Frame = 1


		  
Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNV-EQN 92
           +++  CFAHTGE+              E YGF+EF +H  A R+LQT NN  +P+  +Q 
Sbjct: 76  NFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQL 135

Query: 93  YRPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTG 152
           +R +W    +G+K  +D+ DYTI V DLAADVTDY L ETFRA Y S+K      DR TG
Sbjct: 136 FRLNWASLSSGDK-RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTG 195

Query: 153 RAKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRK 174
           R KGYGFV F+DE+EQ+R M+EMNG+ C  R MRIG  A++K
Sbjct: 196 RTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236

[Close]

BLAST of Spo17731.1 vs. ExPASy Swiss-Prot
Match: RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.400e-34
Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = 1


		  
Query: 42  TGELECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYRPDWVFFGTGEKWGEDAFDYTIL 101
           TG+ E YGF+EF TH  A ++LQ+ N T+MPN EQ +R +W  F TGEK  E   D++I 
Sbjct: 121 TGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIF 180

Query: 102 VRDLAADVTDYTLQETFRARYLSIK------DRQTGRAKGYGFVCFTDENEQVRVMSEMN 161
           V DLA+DVTD  L++TF +RY S+K      D  TG +KGYGFV F DE+E+ R M+EMN
Sbjct: 181 VGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMN 240

Query: 162 GMVCPGRAMRIGADATRK 174
           G+ C  RAMRIG    +K
Sbjct: 241 GVYCSSRAMRIGVATPKK 258

[Close]

BLAST of Spo17731.1 vs. ExPASy Swiss-Prot
Match: RB45A_ARATH (Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana GN=RBP45A PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.300e-32
Identity = 73/141 (51.77%), Postives = 91/141 (64.54%), Query Frame = 1


		  
Query: 42  TGELECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYRPDWVFFGTGEK-WGEDAFDYTI 101
           TG+ E YGF+EF +H  A R+LQT N   MP+ EQ +R +W   G GEK +  +  D+TI
Sbjct: 97  TGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTI 156

Query: 102 LVRDLAADVTDYTLQETFRARYLSIK------DRQTGRAKGYGFVCFTDENEQVRVMSEM 161
            V DLA +VTDY L +TF+  Y S+K      DR TGR+KGYGFV F DENEQ+R M+EM
Sbjct: 157 FVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEM 216

Query: 162 NGMVCPGRAMRIGADATRKVL 176
           NG  C  R MRIG  A +  L
Sbjct: 217 NGQYCSTRPMRIGPAANKNAL 237

[Close]

BLAST of Spo17731.1 vs. ExPASy Swiss-Prot
Match: RP45C_ARATH (Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana GN=RBP45C PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.700e-32
Identity = 76/163 (46.63%), Postives = 95/163 (58.28%), Query Frame = 1


		  
Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +Y+ N F  TGE               E YGF+EF  H TA R LQT N   MP+ EQ +
Sbjct: 94  NYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAF 153

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W   G GE+   +  ++T+ V DLA DVTD+ L ETF+A Y S+K      DR TGR
Sbjct: 154 RLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGR 213

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVL 176
           +KGYGFV F DE+EQ+R M+EMNG  C  R MR G  A +K L
Sbjct: 214 SKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL 256

[Close]

BLAST of Spo17731.1 vs. TAIR (Arabidopsis)
Match: AT1G11650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 151.4 bits (381), Expect = 7.200e-37
Identity = 81/162 (50.00%), Postives = 105/162 (64.81%), Query Frame = 1


		  
Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNV-EQN 92
           +++  CFAHTGE+              E YGF+EF +H  A R+LQT NN  +P+  +Q 
Sbjct: 76  NFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQL 135

Query: 93  YRPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTG 152
           +R +W    +G+K  +D+ DYTI V DLAADVTDY L ETFRA Y S+K      DR TG
Sbjct: 136 FRLNWASLSSGDK-RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTG 195

Query: 153 RAKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRK 174
           R KGYGFV F+DE+EQ+R M+EMNG+ C  R MRIG  A++K
Sbjct: 196 RTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236

[Close]

BLAST of Spo17731.1 vs. TAIR (Arabidopsis)
Match: AT5G54900.1 (RNA-binding protein 45A)

HSP 1 Score: 141.4 bits (355), Expect = 7.500e-34
Identity = 73/141 (51.77%), Postives = 91/141 (64.54%), Query Frame = 1


		  
Query: 42  TGELECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYRPDWVFFGTGEK-WGEDAFDYTI 101
           TG+ E YGF+EF +H  A R+LQT N   MP+ EQ +R +W   G GEK +  +  D+TI
Sbjct: 97  TGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTI 156

Query: 102 LVRDLAADVTDYTLQETFRARYLSIK------DRQTGRAKGYGFVCFTDENEQVRVMSEM 161
            V DLA +VTDY L +TF+  Y S+K      DR TGR+KGYGFV F DENEQ+R M+EM
Sbjct: 157 FVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEM 216

Query: 162 NGMVCPGRAMRIGADATRKVL 176
           NG  C  R MRIG  A +  L
Sbjct: 217 NGQYCSTRPMRIGPAANKNAL 237

[Close]

BLAST of Spo17731.1 vs. TAIR (Arabidopsis)
Match: AT4G27000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 141.0 bits (354), Expect = 9.800e-34
Identity = 76/163 (46.63%), Postives = 95/163 (58.28%), Query Frame = 1


		  
Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +Y+ N F  TGE               E YGF+EF  H TA R LQT N   MP+ EQ +
Sbjct: 94  NYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAF 153

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W   G GE+   +  ++T+ V DLA DVTD+ L ETF+A Y S+K      DR TGR
Sbjct: 154 RLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGR 213

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVL 176
           +KGYGFV F DE+EQ+R M+EMNG  C  R MR G  A +K L
Sbjct: 214 SKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL 256

[Close]

BLAST of Spo17731.1 vs. TAIR (Arabidopsis)
Match: AT5G19350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 140.6 bits (353), Expect = 1.300e-33
Identity = 75/161 (46.58%), Postives = 96/161 (59.63%), Query Frame = 1


		  
Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +Y+ +CF+ TGEL              E YGF+EF +H  A R LQT N T MP  E  +
Sbjct: 38  NYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTF 97

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W  FG+G+K      D++I V DLA DVTDY LQETFR  Y S++      D  TGR
Sbjct: 98  RLNWASFGSGQKVDAGP-DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGR 157

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRK 174
           +KGYGFV F +E+E+ R M+EMNG+ C  R MRI A   +K
Sbjct: 158 SKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKK 197

[Close]

BLAST of Spo17731.1 vs. TAIR (Arabidopsis)
Match: AT1G47500.1 (RNA-binding protein 47C')

HSP 1 Score: 133.7 bits (335), Expect = 1.600e-31
Identity = 70/140 (50.00%), Postives = 87/140 (62.14%), Query Frame = 1


		  
Query: 41  HTGELECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYRPDWVFFGTGEKWGED-AFDYT 100
           H G  E YGF+EF +H  A ++LQ  N   MPN +Q +R +W  F TGEK  E+   D +
Sbjct: 141 HNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLS 200

Query: 101 ILVRDLAADVTDYTLQETFRARYLSIK------DRQTGRAKGYGFVCFTDENEQVRVMSE 160
           I V DLA DV+D  L ETF  +Y S+K      D  TGR+KGYGFV F DENE+ + M+E
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260

Query: 161 MNGMVCPGRAMRIGADATRK 174
           MNG+ C  RAMRIG    RK
Sbjct: 261 MNGVKCSSRAMRIGPATPRK 280

The following BLAST results are available for this feature:

BLAST of Spo17731.1 vs. NCBI nr
BLAST of Spo17731.1 vs. UniProtKB/TrEMBL
BLAST of Spo17731.1 vs. ExPASy Swiss-Prot
BLAST of Spo17731.1 vs. TAIR (Arabidopsis)

BLAST of Spo17731.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902184772\|gb\|KNA10364.1\|	4.2e-55	71.4	hypothetical protein SOVF_1450...	[more]
gi\|30524689\|emb\|CAC85246.1\|	2.0e-49	61.0	salt tolerance protein 6 [Beta...	[more]
gi\|731369905\|ref\|XP_010665562.1\|	2.0e-49	61.0	PREDICTED: polyadenylate-bindi...	[more]
gi\|629104705\|gb\|KCW70174.1\|	4.1e-42	49.0	hypothetical protein EUGRSUZ_F...	[more]
gi\|976901589\|gb\|KVH89625.1\|	1.3e-40	49.0	Nucleotide-binding, alpha-beta...	[more]

BLAST of Spo17731.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QSW8_SPIOL	3.0e-55	71.4	Uncharacterized protein OS=Spi...	[more]
Q84LL7_BETVU	1.4e-49	61.0	Salt tolerance protein 6 OS=Be...	[more]
A0A0J8E0W4_BETVU	1.4e-49	61.0	Uncharacterized protein OS=Bet...	[more]
A0A059BW09_EUCGR	2.9e-42	49.0	Uncharacterized protein OS=Euc...	[more]
A0A103XF54_CYNCS	9.2e-41	49.0	Nucleotide-binding, alpha-beta...	[more]

BLAST of Spo17731.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RBP45_NICPL	1.1e-39	53.4	Polyadenylate-binding protein ...	[more]
RB45B_ARATH	1.3e-35	50.0	Polyadenylate-binding protein ...	[more]
RBP47_NICPL	1.4e-34	52.1	Polyadenylate-binding protein ...	[more]
RB45A_ARATH	1.3e-32	51.7	Polyadenylate-binding protein ...	[more]
RP45C_ARATH	1.7e-32	46.6	Polyadenylate-binding protein ...	[more]

BLAST of Spo17731.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G11650.2	7.2e-37	50.0	RNA-binding (RRM/RBD/RNP motif...	[more]
AT5G54900.1	7.5e-34	51.7	RNA-binding protein 45A	[more]
AT4G27000.1	9.8e-34	46.6	RNA-binding (RRM/RBD/RNP motif...	[more]
AT5G19350.1	1.3e-33	46.5	RNA-binding (RRM/RBD/RNP motif...	[more]
AT1G47500.1	1.6e-31	50.0	RNA-binding protein 47C'	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 100..164 score: 5.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 99..167 score: 6.4
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 98..171 score: 12
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 39..167 score: 5.8
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 92..172 score: 2.85
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 75..173 score: 1.1
None	No IPR available	PANTHER	PTHR24012:SF333	POLYADENYLATE-BINDING PROTEIN RBP45B-RELATED	coord: 75..173 score: 1.1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding