Spo17836.1 (mRNA) | SpinachBase

Overview


Name	Spo17836.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	AP-4 complex subunit sigma
Location	chr2 : 24261916 .. 24270206 (-)
Sequence length	923

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAATCAGTATCAACACCATGGTCTAGTGCCGTTATAAAATAGAAACTCCTCTCTTCAAAAATAAAAGTTTGTGAAGTCCTGAAATTGCAATTACTGTCGCCCTCGCCCCTGCAAAACAAAAGAGCAAAAGTATCAGCTGAACCAAAATTCATTGAATTTCATCTCACAGTGGGAAGTTAGATCAAGGATCAAAAGATGACAATTAGATTCGTGTTAATGGTGAACAAACAAGGCCAAACTCGTCTAGCACAGTACTACGAGTACCTCACTATCGACCAGCGCCGTGCTCTTGAGGGTGAAATCGTCCGCAAGTGCCTCGCCCGTAACGAGCAACAGGTTTCTCTCTTTCTTTGATCTCTATCTACAATTTTAAAATCATGGATTTTCTTAGCAATCAGCAATGTATCTGCGTACCGTTGAAATCAAGCTCGTTATTTTGGGGAATTTTTGGATCAATTCGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTAGTTCTGTAACGGGTCTTAGAATTTGTCGTCAATATGAACATTGCGAGTCAAATCTGATTGTGGGTATTTTATATTTTATTGATTGTGTATGATCTTATTCCTGGGTTCCGTCGAAATTGAGCTAATTGGTTTGGGGAAAATTTGGATCAATTATGTATTTTCCCTTTCTGTATTGGATTATGCAATTTGTCATCAATATGAACAATGTTGATTGTGGGTATTTGTGGATTTGAACAGTAGATGTCCTTAGTGGGATGTATGATCTTGTTTTTGTTGCAATCAATTTTGGGTTGTTTAGGGTTTTAATCCCTTTTTCTAGAGAAATTGATGTCAGTTTAATCCATGATTGAATTGAAAGGAAAGGTTTTTATGTGAATTGTGAGTGTGATCTTGGATTATTAATGACTGGCAACAGAAATCTCTTAATTTGATAAGCTGAAGTGTGCAATTTGAGTATTTGGAGGTGCCCTAACTTTGTTTCATTCATGCGATGTGATAAATCCAGCTATCTGTCTGATTTTGTCTGTGTGAAAAGTTTGTAAATTTATGTTATTTCAATATTTTTCCATGTTTGGTGTCCCTTATCCTGCATTGTTTACATCCTAGGAAATTTTGTCAGTTTAGTTGTGATTTTGTTACGCATTAGTTTAGCTGCTGATTTTAAAAATTTTAAATTTGTTCGACAAGTGTGTTTGTATTGATTGTGCTTATCGTTTGACTCATTACTAAAAGAACATTCCTCTCTTTGGCGTGACAGTGTTCATTTGTGGAGCATCGCAATTACAAGATTGTATATAGGCGCTATGCATCACTCTTTTTCTTGGTTGGAGTTGACAATGATGAGGTGATAATTAAGCTCTTATTGTAGTCTTCATTTGGCTTGCCATGTTATTTTAAGCTGTATTCTTGAAATAGTTTATCTAGTTAGGTTTTAAACTGCTTATAGCTGTTCTCTATGTGACTGCACCAGTATGTACAGATGTATTTGCAGTTTGCACACGTGTTCACTTTTATGATAACTCTTTTGGGCGTCAGGCTTCTTATAAACCATATACCTCTGGTAGTCTGAAATCTGTTATATTTTGAAGTCGAGCTTTTTCTACTTATAAAGGGAAAAAAGGTCTTGGAACCTCATATATAGGTACTCTTAGTTATCATTTGGTCGGACATTGGAAGTTAGATTTCTTAGGCCTTTGCAAGTCTCATGGAGCCCAACTTGCTGGGAAGTTGGGAAGTGTAGAACATGTTGTTTGGTTAAGTGAAAGCAAAAGGTCTTGCGCGCACAGGGTGTACAATAAATTTATTGTACACCAAGATAACTTTTATGCAGGTTCTTATAACTTTAACCTACTTTTTTTGTAACTTTATATTATAAAAATAAAAAGTTGATAGATAAATATTTTAAAGGTTAAATGATTAATTTATACATTAATAGTTATTTTGAAAAAATAATTTTTATTCAAATGAAAAAAATTATCATTAAAAAATAGATGACATTTGTTTGTTAGGAAAAAATAATTTTTATTCAAATGAGTCAGCTAAACGACCACTTAGATTCTTATATTAGGAATACTATTCATGTTTCTTCCATCTGTTTGTTGTCAATTGCTAGGTTTTGTGTGGATTCTTATTGAGCTACAACAATAATACCCTGTGTTAATCCTGCCTTTTTTGTTCAGTAATGTGCTGTAATAAGGTGCTCTAGGTCAAAAGGGTTTCTTTCAATGTCAGTTGGGAAAAGTGGGGCAGTTGTTTAGTGATATCCTAAGTTACTTGGACTCGGGTACTAGTGTCGGACACGGGTATGTGTCCAGGTGTCCGACTCGACTATTGTGAAAAAAATTCATGATTTAAGCCGAAAATGAAGTGTCAGAGTGTCCATATCCATGTCGGAGTGTAGAGGGCCCGACACGGGTACTTGAGCTAAAATGAAGAGTCTGAGTAACATAGGTGATATCTATTGATTCCCAACAATCTTTTCTTATACATTGTTTCGAATTACATCATTTCCTCCTTTCGTTCTCCTAAAGACTATGGTTCTGTTGGGGAATGGGGGTATAGTCTCATCATTTGATGATATTTCATGTGGTACTTTAAACCAAAAGATACCAGTTGAATTGTTCTGCAGCTTACGTTTTCTATAGGTGACTGATATTTTTTCCATTAGAATGTTATTTTTTTCTGGTAAGTAAATAGTATATTACTCCAAGAAATCAATACAACCTATCCACTTTGTTATTAGAGAACAAACCTTCTAGGAAGGACCCTTCTCTGATAAAAAGTTGCGAAACTAGGCTAACAGGCCATAATACAACAATTCTAAAACTCACAACAAACAACCAAGACTAATTACAAATTTTCCATCCATGTTTTGTCAACTTGGCTGACTTTCCTTCCCATCACTCCTCTTATTCTAGCTTTAATTTCTACTTCTATGCCTTTCACTACTGTCTGAACCCTTTGAACCTTTTTCTCCCGAAGTGAATTGTTCCTTGCTTGCCAAATTGCATAGACTGTTGCTGCAATCGTAGCATAAACAAACAGTAGCTCTTCTGAACCTTGAGCCCTTATAGTCTCTACTAACCCATTCCAGGAGCTGTAGGAGATTCCTGTGAGTACCAATACCTAATATCCAATTCAGAGAATGAGTGATGCAATTCCTACTGAACTGGCATTCAAAAAATAGGTGGTTATGACTTTCATCTTGAGTACCACAGATAAGGCATTTAGCATCACTACAAATACCTCTCTTGTACAATCGATCTTTAGGTAGTGTTCTCTTTACCTGAATATCACTTATCTTATCTTATCTTATTGGCCCTGCTATCTTATTTTATCTTATCTTATTGACCTTTATCTTATCTTATCTGAACGTATTGACCCTTATCTTATCTTATTGACCCTTATTGACCCTTATCTTATCTTATCTTATCTTATTGAAACTTATAGTATTACCTTATGTAATATTTACCCCACTTTATCTTATCTTATCTTATCTTATTGGCCCTGAACTTATCTTATCTTATCTTATTGACCCTGAACTTATCTTATTTTATCTTATCTTATTGACCCTGAACTTATCTTATTGGCCCTTATTTTATCTTATTTTATCTTATCTTATCTTATCAGACCTGAAATAAGTGAAAATAAGGTGAAGAGAACAGAGCCTAAAGTCTGCAACCTTCCCTGATTAGTCAACCATTGAATAAACTTATGCTTCGGTATTGAACTTCTATTCTAGGTTGTTGCAGCCCATGGTGTTTCTTGTTCCGGACCATTAACAAGCTCGCACACCTGCATTCCAGTTACTTGGCCCATGTTGAGCTAATGCATCTTTCACTTTACACATATACTTCCACACCCAACTTGCTGCATAGGTGGAGAATAGCTCCATCAATTTGTATCTTTGACATAGACTGTGTGGACCCACTTGACCCACAGAGTATCCTTCATTCCTTCTTCTCTGCTATTTGCCAGACAGACTTGCCAACTAATGCTTTATTCCATAAGTTTATATTCTTATGCTCCAATCCGCCACTTCCCTTTGAGCTGCAAACTTTGTCCCAGTTTTACATGTTCAGGTTTGCTGCTATCAAGTGTACCTTGCCACAAATAGCTCCTGCAGATGTTGTTTATTTTCTGAATTACCACTTTAGGAAGAATAAAAATTTGGGTCAAGGTGTAAATGCTCATTAAAACAACATTCACTAATTGGAGTCTTCCAGCATAGGAAATGTTCCTTGTGCTCAAATCCTTATCTTGGAAACCATCTTCTCAACTAAGGCTTCACAATCACTTGCTTTGAGTTTATTTGCACTAATGGGAACCCCGAGATATTTAAGAGGGAGAATACCCACTTTGAAACCATTGATGTTGCTCAAATGTTGTATATCTTCCTCATTCATACCTGTTTGATAATTTTCAGTTTTGTTCTTACAATTGAATTCCTTGCATCAGTAGATAAGAAGACTTGAAATCCCCTTTACTGAATACTAGCAGATCATCAGCAAAACAGAGATTATACCGGTTCATTTGCTTGCATCTTGGGTGGAACCTAAAGTCTTTTTTGCTCCCTACATACTTCAGTATTCTTGTCAAATACTCCATGCAAATGACAAAAAGCAGGGGAGACAAAGGGTCTCCTTGCCCAAGGCCCCTTTTTGCTGGGAAGTAACCCTGATTACCGCCATTAAGCATGAGTGTATACATCGGGGAAGAGACACAGACCATCACAGTCCGTATGAAATTTTCGGGAAAGTTCAAAGCCCGCTTCATTTCCTCCAAGAAGCTCCATTCTACTGTATCGTATGCCTTTCTGAGGTCTATCTTTATCATACACCTGTTTTGGGTCTGTTTTCTTCAGTAGTGCCTCACTAGGTCTTGACAAACTAACACATTGTGAATTATGCTCCTGCTTGCAACAAATGCTCCTTGATTCTGTGAAATTATCCCAGGGAGGACCCTCTTCAATTGTGAGCATATGAGCTTTGTGATTGTTTTATAGAGCATGTACAACATGCTATGGGCCTATAATCCCCCACTACACTTGGGCATTTAACCTTTTGAACCATTGTGAGAGACGTTGTATTAATTGCATTCAACAACTTTCCATTCTCGAAAATTTGCAAAACAGCCTTTGTTGTGTCTGTTCCAGTGATTTCCCATGTTGCCTTGAAAAAACCACTCCCATATCCATCTATTCCAGGAGATTTGTCTTCCGGAATAGAAAAAAGGGCCTGCTTGACTTCTGCATCGGAGAATTTAAGGTCAAGTAAATTGTGATGTACACCACTGATTTTAGGTCCCAGATGGACAATCTTGCGTATTACCTTCCTCCTGTTTGTGACTGAACTTCCCAGGAAACCTTTGAAGTAATCAACGAATATTTCATTTACTAACTTGACATCAGTCGCCCAATTACCTTGCTCATCAAGTACTGCATTAATCTTGTTACTACACCTCCTAGCTTTAATGCTTGAAACAGCTGAGAATTCTCATCCCCTGTTCTTAGCCAATTGAGCTTTGCTTTTTGACTCAAGTAGGAGAGATAGTTAGTGTGAGCTTGCTTATTCACCTCACTTGCTTCAAATTCCTTTTGTGCCGCTGCAACATCCCCAGGCTTCTCATGAACACCATTTTGAGCCTCGAGCAAATCCCGATATGCTTTAGCATCAGTTGCGTGAACATCTCCAAATCCTTGCTGATTAAGTTGCTTCAAATCTTTCTTGAGAGGTTTCATTTTCTGTATCACCTGGAACATCTTTTATCCTTTTATATCTATAACCCAACTTTTCTGCACAATGTTGATAAACTCAGGAGCATTCTCCCACATTTTAAAGAACCTAAACGGCTTTTTTCCTTGATTTTGATTACGAAAATACCTAATCGGTGCTGGAGTATGGTCAAATGTACCCTCGGGTAAGAAAAGAGTCTCAGCATTTGGATAGTAGTCACACCACTCATCATTCACTAAGACTCTTATCTATTTTTGTCATTACCCTATCTGCACCTTGTTGCTTGTTATTCCATGTGAAAAATCTCCCTTGTTCTTCATATCCTCTACTTCACAATGCTGTACACATTGTTTGAACGGTGCAACTTCAGAATTCCTCACTACACTGCCTATTCTTTCTTCACAATTAAGAACAGTGTTAAAGTCCCATAGCATAACCCAAGGCCCTATCTCTTTATCCGCAAGCCCCTGTAAGTATCTCCAAAGACTTTCTCTTCCTTGTCTACATTAAAAGCATAGACAAAGGTGCACCAGAATTTGTCCCCCATCTTAACAGAACTAACTTTGCAATGAATCAATTGTGCAGTGCAACGCATTATGGTCCATTAGAATGTTGACTGTTGAGGATAGCAGTGATTTATGGTGTGCTGTAAATTTGCTTTTTGCTCAGATAGTTACTGTTACCAGTTGCGAAAGACGGGTTGTTGGTGTTTCTTCTCATCCATTGAACATTTAATATGCGTTGTTCTAAAACTTCTAATATTTTTACAAACTCCAATTCTCCATATTATCTCCTTTTCTATTTCCTTAATTTTCAATAGTTGATTAGTAATGGGTATTTTAAGGCTGCAGTGCTTGCTTCATACGGAGTATCATGTAATGATGTAAAAATGCTACTCTCAAACAAATCCCTTTCACCCAAGCCTTTTCAATATTGTTTTGGGTTTTCAGGAAAACAGATTTTTTTAAACTGAAAAAGGTAGTTTCTTGTGTTTTGTTGTCAGTCTTTAAAATAAACATGATTAGTATTGTTCAAGTTTGTCATGTACCCTGTGTCACATAACATTCAAAATCAAGCCGGGGGTGATACTGAATATGCCCTAAATATAGTAGGTATTTCTTTTGTGTTTAGTATTTGTATGTTTTGACGATTCTTCAATCGGAGGGCTTGAAAATAGCAGGGATTGTATGTATTGGTATTATGTGGTGATCATGTGCTTTATGCTGAAATAATTCCCCATTCCCTGCAACATTCATTGTTGAAGATGTGCAGTTGAGGTTCTTCTCATCTACGGACATCTCAACAATCATGCCCCCCTATATTTATCCGTCCTCATTTTCATCTCTGTTTTTCCTTCACTTTCAAACATAATGAGTCTATTACCTTTTACCCCACCTGTCACATTAGCATGGAATACATGTATAAAAGGGTTTCTGATCATGTGTGATTTTTCTTGTGTATACTATACATAATATTACATACTAGTGGCGTTTAAACACCGCAGCTTCAAATATTAGAAAATTTCATTTTGTTTTGATGGAAATGTTCTGCGTTACAGATCCTTTGTGCATATTTCAACTCTTGTCAACCTCTACATTATTTGATTTGAAGGTTCTGTTATTTCTATATAACCGTTGTTTAAATTATGCAGAATGAGCTTGCAATTCTGGAGTTCATACATTTGTTGGTAGAGACTATGGATCGACACTTTGGCAATGTGGTGAGTGTCATTAACTCCCTTGCATATGTTTTTCCATCTTAAAACTTATTTCATCATAAGATCTCTATTCTTAAGTTTGATTGCAAACACAGTGTGAGCTGGATATTATGTTCCATCTGGAGAAAGCACATTTCATGTTGGAGGAAATGGTGATGAATGGATGCATCGTCGAGACCAACAAGTCTAACATCTTGGCCCCTATTCAATTGATGGATAAAGCATCTTGATTATCTACCTTTTTAGGCAATGTATTGTATATGTTAACATTCTTGTTTTAGTCGAATGGACAAATCGAGGACACCACTGTTTTTCTCTCTCTCAATTGTATGTTTAACATTAAAATTGTTACTAAGCCTATTTTATTTTGAAGAATGTAAGACGAAACGTTCCTTTTTGTGGAATCGCTGTAATTTTGTCATCAATATGAGATAAGATGTGAAGCCAAGTGTTCTTCTTTCAAAATTTAGGAAGTCTGCAATTTTTAGTATCATTGAAATGTATTAATTTCCATAACTATCCTGA

mRNA sequence

TGAATCAGTATCAACACCATGGTCTAGTGCCGTTATAAAATAGAAACTCCTCTCTTCAAAAATAAAAGTTTGTGAAGTCCTGAAATTGCAATTACTGTCGCCCTCGCCCCTGCAAAACAAAAGAGCAAAAGTATCAGCTGAACCAAAATTCATTGAATTTCATCTCACAGTGGGAAGTTAGATCAAGGATCAAAAGATGACAATTAGATTCGTGTTAATGGTGAACAAACAAGGCCAAACTCGTCTAGCACAGTACTACGAGTACCTCACTATCGACCAGCGCCGTGCTCTTGAGGGTGAAATCGTCCGCAAGTGCCTCGCCCGTAACGAGCAACAGTGTTCATTTGTGGAGCATCGCAATTACAAGATTGTATATAGGCGCTATGCATCACTCTTTTTCTTGGTTGGAGTTGACAATGATGAGAATGAGCTTGCAATTCTGGAGTTCATACATTTGTTGGTAGAGACTATGGATCGACACTTTGGCAATGTGTGTGAGCTGGATATTATGTTCCATCTGGAGAAAGCACATTTCATGTTGGAGGAAATGGTGATGAATGGATGCATCGTCGAGACCAACAAGTCTAACATCTTGGCCCCTATTCAATTGATGGATAAAGCATCTTGATTATCTACCTTTTTAGGCAATGTATTGTATATGTTAACATTCTTGTTTTAGTCGAATGGACAAATCGAGGACACCACTGTTTTTCTCTCTCTCAATTGTATGTTTAACATTAAAATTGTTACTAAGCCTATTTTATTTTGAAGAATGTAAGACGAAACGTTCCTTTTTGTGGAATCGCTGTAATTTTGTCATCAATATGAGATAAGATGTGAAGCCAAGTGTTCTTCTTTCAAAATTTAGGAAGTCTGCAATTTTTAGTATCATTGAAATGTATTAATTTCCATAACTATCCTGA

Coding sequence (CDS)

ATGACAATTAGATTCGTGTTAATGGTGAACAAACAAGGCCAAACTCGTCTAGCACAGTACTACGAGTACCTCACTATCGACCAGCGCCGTGCTCTTGAGGGTGAAATCGTCCGCAAGTGCCTCGCCCGTAACGAGCAACAGTGTTCATTTGTGGAGCATCGCAATTACAAGATTGTATATAGGCGCTATGCATCACTCTTTTTCTTGGTTGGAGTTGACAATGATGAGAATGAGCTTGCAATTCTGGAGTTCATACATTTGTTGGTAGAGACTATGGATCGACACTTTGGCAATGTGTGTGAGCTGGATATTATGTTCCATCTGGAGAAAGCACATTTCATGTTGGAGGAAATGGTGATGAATGGATGCATCGTCGAGACCAACAAGTCTAACATCTTGGCCCCTATTCAATTGATGGATAAAGCATCTTGA

Protein sequence

MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETNKSNILAPIQLMDKAS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo17836	Spo17836	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo17836.1	Spo17836.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17836.1.utr5p.1	Spo17836.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17836.1.CDS.4	Spo17836.1.CDS.4	CDS
Spo17836.1.CDS.3	Spo17836.1.CDS.3	CDS
Spo17836.1.CDS.2	Spo17836.1.CDS.2	CDS
Spo17836.1.CDS.1	Spo17836.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17836.1.utr3p.1	Spo17836.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17836.1.exon.4	Spo17836.1.exon.4	exon
Spo17836.1.exon.3	Spo17836.1.exon.3	exon
Spo17836.1.exon.2	Spo17836.1.exon.2	exon
Spo17836.1.exon.1	Spo17836.1.exon.1	exon

Homology

[Close]

BLAST of Spo17836.1 vs. NCBI nr
Match: gi|731354058|ref|XP_010688379.1| (PREDICTED: AP-4 complex subunit sigma [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 284.6 bits (727), Expect = 9.200e-74
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 1

		  
Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MTIRFVLMVNKQGQTRLAQYYEYLTI+QRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIEQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGCI+ETNKSNILAPIQLMDKAS
Sbjct: 121 NGCIIETNKSNILAPIQLMDKAS 143

[Close]

BLAST of Spo17836.1 vs. NCBI nr
Match: gi|703063205|ref|XP_010086907.1| (AP-4 complex subunit sigma [Morus notabilis])

HSP 1 Score: 276.6 bits (706), Expect = 2.500e-71
Identity = 137/143 (95.80%), Postives = 141/143 (98.60%), Query Frame = 1

		  
Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRF+LMVNKQGQTRLAQYYEYLTI++RRALEGEIVRKCLAR EQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEYLTIEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGCIVET+KSNILAPIQLMDKAS
Sbjct: 121 NGCIVETSKSNILAPIQLMDKAS 143

[Close]

BLAST of Spo17836.1 vs. NCBI nr
Match: gi|950931194|ref|XP_014506371.1| (PREDICTED: AP-4 complex subunit sigma [Vigna radiata var. radiata])

HSP 1 Score: 275.4 bits (703), Expect = 5.600e-71
Identity = 136/143 (95.10%), Postives = 140/143 (97.90%), Query Frame = 1

		  
Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRFVLMVNKQGQTRLAQYYEYLT+++RRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFVLMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVD+DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDDDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGCIVETNKSNIL PIQLMDK S
Sbjct: 121 NGCIVETNKSNILTPIQLMDKTS 143

[Close]

BLAST of Spo17836.1 vs. NCBI nr
Match: gi|1009162536|ref|XP_015899491.1| (PREDICTED: AP-4 complex subunit sigma [Ziziphus jujuba])

HSP 1 Score: 275.4 bits (703), Expect = 5.600e-71
Identity = 135/143 (94.41%), Postives = 142/143 (99.30%), Query Frame = 1

		  
Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRF+LMVNKQGQTRLAQYYEYLT+++RRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDN+ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNEENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGCIVET+KSNILAPIQLMDK+S
Sbjct: 121 NGCIVETSKSNILAPIQLMDKSS 143

[Close]

BLAST of Spo17836.1 vs. NCBI nr
Match: gi|593705170|ref|XP_007152949.1| (hypothetical protein PHAVU_004G173800g [Phaseolus vulgaris])

HSP 1 Score: 275.0 bits (702), Expect = 7.300e-71
Identity = 135/143 (94.41%), Postives = 140/143 (97.90%), Query Frame = 1

		  
Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRFVLMVNKQGQTRLAQYYEYLT+++RRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFVLMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVD+DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDDDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGC+VETNKSNIL PIQLMDK S
Sbjct: 121 NGCVVETNKSNILTPIQLMDKTS 143

[Close]

BLAST of Spo17836.1 vs. UniProtKB/TrEMBL
Match: W9QC48_9ROSA (AP-4 complex subunit sigma OS=Morus notabilis GN=L484_005492 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.800e-71
Identity = 137/143 (95.80%), Postives = 141/143 (98.60%), Query Frame = 1

		  
Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRF+LMVNKQGQTRLAQYYEYLTI++RRALEGEIVRKCLAR EQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEYLTIEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGCIVET+KSNILAPIQLMDKAS
Sbjct: 121 NGCIVETSKSNILAPIQLMDKAS 143

[Close]

BLAST of Spo17836.1 vs. UniProtKB/TrEMBL
Match: A0A0S3TD80_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G255800 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 3.900e-71
Identity = 136/143 (95.10%), Postives = 140/143 (97.90%), Query Frame = 1

		  
Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRFVLMVNKQGQTRLAQYYEYLT+++RRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFVLMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVD+DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDDDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGCIVETNKSNIL PIQLMDK S
Sbjct: 121 NGCIVETNKSNILTPIQLMDKTS 143

[Close]

BLAST of Spo17836.1 vs. UniProtKB/TrEMBL
Match: A0A151T2W6_CAJCA (AP-4 complex subunit sigma-1 OS=Cajanus cajan GN=KK1_015885 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.100e-71
Identity = 136/143 (95.10%), Postives = 140/143 (97.90%), Query Frame = 1

		  
Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRFVLMVNKQGQTRLAQYYEYLT+D+RRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFVLMVNKQGQTRLAQYYEYLTLDERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVD+DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDDDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGCIVET+KSNIL PIQLMDK S
Sbjct: 121 NGCIVETSKSNILTPIQLMDKTS 143

[Close]

BLAST of Spo17836.1 vs. UniProtKB/TrEMBL
Match: V7C6E3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G173800g PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.100e-71
Identity = 135/143 (94.41%), Postives = 140/143 (97.90%), Query Frame = 1

		  
Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRFVLMVNKQGQTRLAQYYEYLT+++RRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFVLMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVD+DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDDDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGC+VETNKSNIL PIQLMDK S
Sbjct: 121 NGCVVETNKSNILTPIQLMDKTS 143

[Close]

BLAST of Spo17836.1 vs. UniProtKB/TrEMBL
Match: C6SXR3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G005300 PE=2 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 1.500e-70
Identity = 135/143 (94.41%), Postives = 140/143 (97.90%), Query Frame = 1

		  
Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRFVLMVNKQGQTRLAQYYEYLT+++RRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFVLMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVD+DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDDDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGCIVET+KSNIL PIQLMDK S
Sbjct: 121 NGCIVETSKSNILTPIQLMDKTS 143

[Close]

BLAST of Spo17836.1 vs. ExPASy Swiss-Prot
Match: AP4S_ARATH (AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790 PE=1 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 9.600e-71
Identity = 129/142 (90.85%), Postives = 141/142 (99.30%), Query Frame = 1

		  
Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRF+LMVNKQGQTRLAQYYE+LT+++RRALEGEIVRKCLARN+QQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFF+VGVD+DENELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKA 143
           NGCIVET+K+NIL+PIQLMDKA
Sbjct: 121 NGCIVETSKANILSPIQLMDKA 142

[Close]

BLAST of Spo17836.1 vs. ExPASy Swiss-Prot
Match: AP4S1_HUMAN (AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.800e-45
Identity = 81/141 (57.45%), Postives = 119/141 (84.40%), Query Frame = 1

		  
Query: 3   IRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I+F LMVNKQGQTRL++YYE++ I++R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62  YAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query: 123 CIVETNKSNILAPIQLMDKAS 144
           CIVETN++ ILAP+ ++DK S
Sbjct: 122 CIVETNRARILAPLLILDKMS 142

[Close]

BLAST of Spo17836.1 vs. ExPASy Swiss-Prot
Match: AP4S1_BOVIN (AP-4 complex subunit sigma-1 OS=Bos taurus GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.100e-45
Identity = 81/141 (57.45%), Postives = 119/141 (84.40%), Query Frame = 1

		  
Query: 3   IRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I+F LMVNKQGQTRL++YYE++ I++R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62  YAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query: 123 CIVETNKSNILAPIQLMDKAS 144
           CIVETN++ ILAP+ ++DK S
Sbjct: 122 CIVETNRARILAPLLILDKMS 142

[Close]

BLAST of Spo17836.1 vs. ExPASy Swiss-Prot
Match: AP4S1_MOUSE (AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap4s1 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.500e-44
Identity = 81/141 (57.45%), Postives = 118/141 (83.69%), Query Frame = 1

		  
Query: 3   IRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I+F LMVNKQGQTRL++YYE++ I++R  LE E+ + CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYRQ 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62  YAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query: 123 CIVETNKSNILAPIQLMDKAS 144
           CIVETN++ ILAP+ ++DK S
Sbjct: 122 CIVETNRARILAPLLILDKLS 142

[Close]

BLAST of Spo17836.1 vs. ExPASy Swiss-Prot
Match: AP4S_DICDI (AP-4 complex subunit sigma OS=Dictyostelium discoideum GN=ap4s1 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.300e-39
Identity = 81/141 (57.45%), Postives = 110/141 (78.01%), Query Frame = 1

		  
Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M I++ L+VN +G+TRL+QYYE +  ++R A+E EI+RKCL+R E QCSFVE+++YK++Y
Sbjct: 1   MAIKYFLLVNIRGKTRLSQYYESIPFEERPAMESEIIRKCLSRTEIQCSFVEYKDYKVIY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           R+YA+LFF+VGVD  ENELAILE IH  VE +D  F NV    IMF+L+KAHF+L+EMV 
Sbjct: 61  RKYATLFFIVGVDTTENELAILELIHNYVEILDSCFDNV----IMFNLDKAHFILDEMVS 120

Query: 121 NGCIVETNKSNILAPIQLMDK 142
           NG IVE +K +IL  + L+ K
Sbjct: 121 NGDIVEISKQHILEFVNLLYK 137

[Close]

BLAST of Spo17836.1 vs. TAIR (Arabidopsis)
Match: AT2G19790.1 (SNARE-like superfamily protein)

HSP 1 Score: 267.3 bits (682), Expect = 5.400e-72
Identity = 129/142 (90.85%), Postives = 141/142 (99.30%), Query Frame = 1

		  
Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRF+LMVNKQGQTRLAQYYE+LT+++RRALEGEIVRKCLARN+QQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFF+VGVD+DENELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKA 143
           NGCIVET+K+NIL+PIQLMDKA
Sbjct: 121 NGCIVETSKANILSPIQLMDKA 142

[Close]

BLAST of Spo17836.1 vs. TAIR (Arabidopsis)
Match: AT1G47830.1 (SNARE-like superfamily protein)

HSP 1 Score: 125.6 bits (314), Expect = 2.500e-29
Identity = 63/139 (45.32%), Postives = 95/139 (68.35%), Query Frame = 1

		  
Query: 3   IRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           IRF+L+ N+QG+TRLA+YY  L   ++  +E E+ R  + R+ +  +FVE R +K++YRR
Sbjct: 2   IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYRR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA LFF V VD  +NELA LE IHL VE +D  F NVCELD++F+  K + +L+E ++ G
Sbjct: 62  YAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121

Query: 123 CIVETNKSNILAPIQLMDK 142
            + ET+K  I+  +  ++K
Sbjct: 122 ELQETSKRAIIERMSELEK 140

[Close]

BLAST of Spo17836.1 vs. TAIR (Arabidopsis)
Match: AT2G17380.1 (associated protein 19)

HSP 1 Score: 122.5 bits (306), Expect = 2.100e-28
Identity = 58/139 (41.73%), Postives = 95/139 (68.35%), Query Frame = 1

		  
Query: 3   IRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I FVL+V++QG+ RL ++Y   T  +R  +  E+    L R  + C+F+E R YK+VY+R
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYKR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YASL+F + +D  +NEL +LE IH  VE +DR+FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 62  YASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 123 CIVETNKSNILAPIQLMDK 142
            + E++K  +   I   D+
Sbjct: 122 ELQESSKKTVARIISAQDQ 140

[Close]

BLAST of Spo17836.1 vs. TAIR (Arabidopsis)
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein)

HSP 1 Score: 122.5 bits (306), Expect = 2.100e-28
Identity = 58/139 (41.73%), Postives = 95/139 (68.35%), Query Frame = 1

		  
Query: 3   IRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I FVL+V++QG+ RL ++Y      +R  +  E+    L R  + C+FVE R YK+VY+R
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YASL+F + +D ++NEL +LE IH  VE +DR+FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 62  YASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 123 CIVETNKSNILAPIQLMDK 142
            + E++K  +   I   D+
Sbjct: 122 ELQESSKKTVARIISAQDQ 140

[Close]

BLAST of Spo17836.1 vs. TAIR (Arabidopsis)
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein)

HSP 1 Score: 111.3 bits (277), Expect = 4.900e-25
Identity = 54/144 (37.50%), Postives = 97/144 (67.36%), Query Frame = 1

		  
Query: 3   IRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNY-----K 62
           I+ V+M+N QG+ RLA++Y+YL +++++ L   +     +R E   +F+E  +      +
Sbjct: 2   IKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDSR 61

Query: 63  IVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEE 122
           +VY+ YA+L+F++  D  ENELA+L+ I +LVET+D+ F NVCELDI+F+  K H +L+E
Sbjct: 62  LVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLDE 121

Query: 123 MVMNGCIVETNKSNILAPIQLMDK 142
           +V  G ++ET+ + ++  ++ + K
Sbjct: 122 IVFGGQVLETSSAEVMKAVEEISK 145

The following BLAST results are available for this feature:

BLAST of Spo17836.1 vs. NCBI nr
BLAST of Spo17836.1 vs. UniProtKB/TrEMBL
BLAST of Spo17836.1 vs. ExPASy Swiss-Prot
BLAST of Spo17836.1 vs. TAIR (Arabidopsis)

BLAST of Spo17836.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|731354058\|ref\|XP_010688379.1\|	9.2e-74	98.6	PREDICTED: AP-4 complex subuni...	[more]
gi\|703063205\|ref\|XP_010086907.1\|	2.5e-71	95.8	AP-4 complex subunit sigma [Mo...	[more]
gi\|950931194\|ref\|XP_014506371.1\|	5.6e-71	95.1	PREDICTED: AP-4 complex subuni...	[more]
gi\|1009162536\|ref\|XP_015899491.1\|	5.6e-71	94.4	PREDICTED: AP-4 complex subuni...	[more]
gi\|593705170\|ref\|XP_007152949.1\|	7.3e-71	94.4	hypothetical protein PHAVU_004...	[more]

BLAST of Spo17836.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
W9QC48_9ROSA	1.8e-71	95.8	AP-4 complex subunit sigma OS=...	[more]
A0A0S3TD80_PHAAN	3.9e-71	95.1	Uncharacterized protein OS=Vig...	[more]
A0A151T2W6_CAJCA	5.1e-71	95.1	AP-4 complex subunit sigma-1 O...	[more]
V7C6E3_PHAVU	5.1e-71	94.4	Uncharacterized protein OS=Pha...	[more]
C6SXR3_SOYBN	1.5e-70	94.4	Uncharacterized protein OS=Gly...	[more]

BLAST of Spo17836.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AP4S_ARATH	9.6e-71	90.8	AP-4 complex subunit sigma OS=...	[more]
AP4S1_HUMAN	1.8e-45	57.4	AP-4 complex subunit sigma-1 O...	[more]
AP4S1_BOVIN	3.1e-45	57.4	AP-4 complex subunit sigma-1 O...	[more]
AP4S1_MOUSE	1.5e-44	57.4	AP-4 complex subunit sigma-1 O...	[more]
AP4S_DICDI	4.3e-39	57.4	AP-4 complex subunit sigma OS=...	[more]

BLAST of Spo17836.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT2G19790.1	5.4e-72	90.8	SNARE-like superfamily protein	[more]
AT1G47830.1	2.5e-29	45.3	SNARE-like superfamily protein	[more]
AT2G17380.1	2.1e-28	41.7	associated protein 19	[more]
AT4G35410.2	2.1e-28	41.7	Clathrin adaptor complex small...	[more]
AT3G50860.1	4.9e-25	37.5	Clathrin adaptor complex small...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011012	Longin-like domain	unknown	SSF64356	SNARE-like	coord: 3..141 score: 4.58
IPR016635	Adaptor protein complex, sigma subunit	PIR	PIRSF015588	AP_complex_sigma	coord: 2..143 score: 1.6
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	CLATHRIN COAT ASSEMBLY PROTEIN	coord: 2..141 score: 1.0E
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 2..142 score: 1.5
None	No IPR available	GENE3D	3.30.450.60		coord: 3..141 score: 2.5

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0006810	transport
biological_process	GO:0006301	postreplication repair
cellular_component	GO:0005905	clathrin-coated pit
cellular_component	GO:0005794	Golgi apparatus
molecular_function	GO:0008565	protein transporter activity