Spo17850.1 (mRNA) | SpinachBase

Overview


Name	Spo17850.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RNA-binding protein 38
Location	chr2 : 54886463 .. 54894058 (-)
Sequence length	2334

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCTATATTTTTCACTCACAAGATCAACCTTTCTCTTTTCTAATTCCCTTCCCTCCCAATTTTCTCTCTCCTCCTTCCCACACCTTCCCTCCCTTTCCCCCCACCCTTCCCACCAGATCCCTCTCCGTTCCTCAGCCCGAACACCAACCAATGACTCCGGCACCGACACCAATCACGGCGGCGGCAACCGTCAACAACCAGTTCGGCGACACGACGTACACTAAGGTTTTCGTCGGAGGTTTGGCGTGGGAAACTCAGAAAGACACTCTCAGAAACTATTTCCAGCAATTTGGTGATATTTTGGAAGCTGTCGTCATCACTGATAAGGCTACTGCTAGATCCAAGGGCTACGGTTTTGTACGGCCTTCTTCTTCCTCCTCCTTCTCTTTTTCTTTTTAAAATAAATTTTAATTTAATTTTCAATTTTAATTTGTTTGATTTTGGTTGCATAATGACAACTCGGAAACTGTAGATCCTTCCATTCTTTTGAAATTTAGTGAGTTAAATATCCGGAAATATCATGTTCGTTGCTTCATCTTCACTCACATCACTATCAATTCAGATTTACGTAACAAATTTCAAAATTTAGGGTTTTTCATTGTTTTTCAGTTATTTTCTTTTTTTGCTTAATTTTGCACAATTATACGCTAACATTGTTAGCCAGATACTAATACCGTAATACGTACTTACGGAGTATGTAATACTCCGTTATTACGTATTACGGAGTATATTTTTTTTGTGATTAGGTTCATTTTAGTGCAAAATGATCAAGTACAAGTATTAAGATTAGAGCATAATAATCAAGCTCTGATCCTCTCCCGTTCTTTTTCTTCAATTCCGGTCTTGAAATAATAAACCATCATCCAATTATTCTCTATCATGCACATTCGACCGATCATGATCAGTATGGGTGATCACTAAATTGTTAGCCTATAAAAGCAACCTAACTCATCATTTTGGATGATATAAAAACAACATTTTGGTAGTGGTTAAGTTTTTTTAGTTTTTTTGTTGGTTTAGAAATGGGATAAGAAAAATGAAATTGTTGGTTGCTTTTTACTTAATTTAGTATATATTATTATGAAATAGGTAACTTTTCGGGAGCCAGAAGCAGCAATGAGGGCATGCCTTGATGCAACTCCAGTGATTGATGGAAGAAGGGCCAATTGCAATCTTGCTTTTTTGGGTGCTCAAAAATCTAAACCTTCCACTCCTTCCCACCACACTACTCCTGGTGAGTCCTTTTTTTATTTATTTCATCCCTTCATTAATTTACTTAATTTTTTATTTATTTGATGCGAATGAGTTACAAAGACTATGGAAATGATAATAAAATTTCGAACCTGAGATCATCGTACACAAATCACCAGTTTTAACAAATACCAGTTTAATAAATACGGAGTATAGTATAATAGATCACATTTAATGGTTGATTAATTTCCTTGATTAATTGAATTACACTACACTGTGGAAACTATAATGGCTCAATTATTATACGAAGAAGAAGATACTATAATAAAATTGATGTTTTGTTCTTTTTATTAAATGTTAAAGATAGATAAAAGAAATGATAATTAAAGTTGACAAGATTCTATAAAGTAAAAACATTGCGTATTATCCTAAATAGGGGATAATCATGCAATATTTGATCATGTTATGGCCAAGATTTGACATAAAGAGAGCTTGACTACTCTAAATATTCTCTATAATTCTAATTGCATCACCTAGAATATCTATGCGCAATTAATTTTGATACCAGATTAGCTAAAGTAAATTCTTCTTCTACCAAATTAATTCGTGAGACGGCAGGATTTTCTTTCTTCACCAAACTGTGTACCAACCACTTTAATTAATTCCTCAGAGATGGAGATTGTTTATATAGTACCTGTAACACTATTTATACTTTTTCCATTGCTCGAAATTAGTTGTTACATTGTCCAATATTAATTTCCCGTGACATGATCTACCAAAATAAACTTTACAATAGGTGTTACTCCGTATGAGTTGATCAAAAATTGGGTCGGGCCGGGTTTTAACACAAAAACTCATGTCCAAATTCATAAATTTGGTGTGGGTTTTTTGGGCCTAAACATGGGTTTTGGGTCGGATTCGGGCTCTGGTCTAAAATGCATATTTGAGGTTGTCCAAACCCGTACTTTTTCGAGCAGGGCTAGGCCGGGCCAACAGATCGGACTATAAATGATCAGGTTATTGTCCTTTGTTCAATAGTATGAACTCAGAAGTAACATATTATGAGATTCAATCATAAACCGTTACTATTTCATGAATGAAATTCAATCATAAACCATTACTATTTTATAAATTTGTGACAATTTTGTCTAGCAACAAAAACAAAAAATAATGCAACACTTTTATTATGTTTTTCGTATAACTACTCCGTAACACGGAGTAATTGATATGATATCAGACCGTGTGACAAAAGAATTAACGCGTTATTTATTTTTTCTAGTTTTGTGTTTGAGGTAACGAAATAATAAACACACTTGTACTATATTGAAAAATGGTTGGGAAAACAGGAATAAGCAGGAATGTGAAGGGAATGAACAGCAATGGTGAGAGTGGTTATGGAGGAGCAGCCTTTATTGGAGCAACAGCATCCACTACCTTTCCACATTATGCCATCCAACAAGGGATTCCTTTAGCTCACTTCTACGGGTATGTTATGATGACCGTGGTCTACTTCTACTAGTCTATTATCATTATTATAATATTATTCCATACTGTAGTATTATCATTAATCAGTACTCCATTCGTTCTTAAATAAGTGTCATGTTTTTCTAATTAGGCGTACCTTTTACTTGTCCGGTTTCTATTATGGACTATATTTTTCTCACTTTTTCATAAATCATGATTATTTTTGACTATATACTTCGTATTTTACATTTTTCCCACTTTTTCATCTCACATCCACTTTTATTTGTACTTATCAATAAATAATAATCTACTTTATCCCCTTCTCCGTAAAACACTAACAATCATTATTTTTCTTATACACTTTTTATATTTCTTAATACCCGTATTTTTCTTACCGGATGAAATATACTTATTTAAGAACGGAAGTAGTACTTTCGTTTTTCTATAATCGCATGTTTTCTTGACACGTGTCACGTATTCAAGAAAGTGATTCAAGAATATTAGCGGATTTATTAAACTTGTGTTAAGAGGATGTTAGCGATTATAAAAATGGAGAATTATTTCTTTCAATTTCTTTCTTTTCTTTTTACAGCTGCTTGCCTGCTTGTCAAATTGACTGTCCAATACTCCAATGTTTTCTTTTTCGCTTTGTCAGTGTTTTTCCCTCTATCCCTTTGTCTGTCCTTTTGTCTCTCTCATCACGTGCTGAGTCTGGTGGATGCACATGTTTGACAGCTCAAATTCAATTAAAAGCTTTACCCCGCATGCTCACTCACTCCTGTATTTCTTTTCTTTGTGTGTGTGAGAGACATTGACAGCGTAACTGAGAAGACCAGCATGTGGTCTCTTCTCATTACAACGCCCAGTTACTTCAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAATGACTTAAAAATTAATTTAGCATTCAATAATCTGTATTATGAAAATAATAATCAAAATTAATTAATAATTAATTAGCGTGTTTGGTTTCCCAGGAGTAGTAGACAACTAGACATTCCATCCTTGTATATTAGCAATAGAATCACGGCAAAGTCTTGCATGAGACGGTCTTGTAATAAACCAGCATGATCCAATCTCAGATCTTTTACGATAGTTTAACTATGTTAATGATCAAAGTCTTGTTATACATTTAACTCGATGAGTTTTTTAACATTAAAACATACGAACAACAAATTCTTGTTATACCTCTTCCGTTCTCATTTAGTTGCAACGTTTTGATTTTTGCACTATTTATATACTCTTCTTTGAACGGCTCTGATGAGTTATATTGCTAATACATAAACTAAAATTTAGTCATATGAGATATTAATGGCCAAATATATGCATTAGCAAGCGTAAAAGTCAAAACGTTGCAACTAAAAGAGAACGAAGGATGTAGATTTTTGGTTTGAAAATTCAAGTTAAATAAAAAGTGATCACTTTCGAATCTCATATTATAAGCTTTACTATGCATGTAGTGGGACAAAGAAGCAAATTGTTTAAGGAGAGAAAGCACTACAATGGAAGTATTATTACAAAAATGCAGTTTTTGTATGATGATCAATGAATCTGTTCCCCACACTTACTGTTATGAACAATGATATTGCTGATTCTCCTTACCCTTTTCTTCGAGTACAAAAATAGTTTATCATTCAATTTATTCGAATAATTGTTGTGCCATTTTAGTTTGAGGAATGATGATGATATTCTTGTTTTCTTTTTGTTATCTTAGAAACTTAATTAATTGCCTTGAGTTTAGGTTGGATGTAAGTGATCAAGATAACATTGCTTTTGTCTTACGTTGTTTTTCTGTCTGTTGTTTTCTTCTGTTGCTTACTTTCAGGTACCCACCATATTCATCTGATTACACTTACCCTGCGGTTAGTGCAAGCCTTTTTATGTACCCTTTACAACTGCTCATGCTTATAAGCTTACAAAGTTGTTTCGATTTGTGTTTTTGGTGTTTGATGAAATACGGAGTAATAGATGTACAAAGTAAGTACAATCTTGTATAAGGCAGAAACCAAGCTACAACTCTACAAGTGTTCATTCGAAAAGAGAGAGTTATAAGTGAAATTAAACTATAAGAACAGTAAATTCATGGATTTCTGCCTGATTTTACTATAACATTTATCTCTCTAATGCATCCTAAGTGGGAGTCGTTGCTTGGAAAAACCAACCCTAATCCATTACAATTATAGGAAGTGTGACAACTTTTACCTATACGTGCATCCCAAAACAAAATATGGTTGTAGAACTAAGGCTCTGTTTTGTTCGACATATTTTGACTTATTTCAGACAAAAGAAGTTTTTTTTTTACATTGTAACACACAAATAAGTTTTTTTCAGATAAAATAAGTTCAAATAATTTAGCGGAGCCTAAGTTTTTCTGATGTAAAGAGTAGTAATTAGTTGCTCATGTTACTAAATGGAAATTAATTCAGCGATTAAACTACAATAATAGCAATACTAATTTCGTTATGCAATCTTATCCGGTTTTAGGGTTACTATGGAGTGCATGGAGGAGGAGTAGCCAACCAATACCAGCTGTACGGAGCAGCTGGGGCAGCTGTAGGAGGCATGATGAACTGCTTCTATCCTTATCAACTGCAGTATGGTGATCAAGTGAATGCTGCTGCTGGGGGAAATGCTGCAGCAACTACCGCTTATGCAACTGCTGCGACACAGCCCTATGGCATGCACTACCCCCATCACGGCCTCTACCCGTTCTCTTCTGCTACTTCTCCCCAGCAGTACTACAGTCCTCCCATGTCTTTTGCTGCAGCCACAAACCCTATGCAATCAGGTTTGTACTTCCATTTTTTTCTCATTAAGCAAGAAAACTCATTCCCATATATAAATATTTTAAGTAAGGTTACATTATTTCCACTTAAGGCTCAGCCTAAGGCTCTGTTCTGCACCCTATTTCCACTTATTTCAGGGAAAAAAAGTTCAGAAAAAAAAAAAGTTGACCAAGTATAATTTATAACTAAAATAAGTTTTGATAAGTTCAGATAAGATAAGTCCAGAAAAAATAAGTGAAAATCAGGTGAATAGAACGAACTCTAAAGACTGTTACACAAATCTTAGTATGTAGATAATGAATTACGAGTCTTAATTTCTTATGTTTGGACTAATTAAGGGTAAGATTGGATGCAGAACTAGAATTGTACTCGGTATTTTGAGGGGACGAAATGTATTTGGTTCTCTAAATTTTCCAAAAAGGAGACCAAGTACAGAAAATATCTATCAGTTGTCAAAGCACTGTTTTGTATTTACAGGGAAACCCCAGCTTGTACCAGCCCCTCTTTGCTCTGTCCTAGTCCCTACATATGTTTGGCTCATCCATCAAATCCTGTTTATATAGAAATCAATACCAGATCTTGTTGTTTCTAATATTAGGACAGAAAATTGACCGTTTCTCAGAATTCTGAACTGTACTAATACATCTGTTTGTAGTACTAATTAATGTGTGGCTACTGTCAAGTGTGTCAACTGACTATCTTTAATAGTGTGTTTTGCTTTGCCACAGGCATAACCATGGCTCTTCAGGCTCCGATTCCTCGTTGTTAATGGGACGTGCTGCAACTGGTTCTCTTTGGTCTAACCAACGGTTCTCTTTTTTACCCTCGCTCATGAACCATCTCCATCGATCTCTTGCCAGACTCCTACATGTATTATGTATAGGCAGTTGGCCGAGGTTGAGAAGCATTTGTGGGTCCCACATAGGGATCACACATTCACACCCCCAAAAAAAAACATCATTTATGCATTCTCATTGCATTTATCATTTTCAAGGAGGTCTTGATCAAAGAGATTATAGTCTCCTGAAAGTGATCATCCATCAACCAACTTGGCTATTTTGGAGAGCGAAGTTGGATTGCATATAGAATTGATCTTACGTTTAGCCTCAGAATAAGGCTTAAACGCGTGACAACTACTACTACTACCAAGTTTAGCTTCAATTGTGCCCCGTTAATAGTGAAGGCATATAGAAGTACATAGCTATTAGTCACACTAACCTAGCTTACTTTGATGTTAAACTAACAAGTCTTGACTATTGATTAGGTCATATCATTAGTCAAGGCTACTTGCTCGTCTAGTATTAGGGCATGGGATGCCCCTTTTACTTGTCATTTTTTGGGGTCATTTTAGCATAAACAAAAATTCATGTGAATTGAAGAACATCATCTAGCAATGGAGCTTCCTCGCGGTTGGGGAATGAATCATCTTTGAGTCGATCATTGTTGGCTCATTGTGGCTAAATATTGGAGTTTTAGCCTTGATTTCATTGTACATTGTTATTATTACTTTTAAGGGGAGATTTTTCTTTTAGTTGATATAATCCCCTTTGATCAGCATGTAGCAATTCTAATACACTGTTTGAACTCCATATATTGGTTAATGGAGTTCATCAGAAAAGACTTCATAACTTTCATGATCCTTCTTCCCCTTCTCCTCAACCCGAAAGTAAGGAGGCGCGGAATGGGACCCACTTGTTCGCTGTTATCTAAGTTTCGCCTTCTGTAGGAACTTGGTCTCACACCATTAGTCAGGGACTGTGGTGTGCTGCTAAGAATAAGACTTGTTAAATGTTAATCTGTAATCTGTAATCTGTACTATTAGTCGTAAAGATTTGATATTCTAATGTTCTGAATTGCGACGATTTATATGTAGTGAACAATTTAGTAGAGATGTTATCTTGTAATAGTAGGAAAAAATGTTGCTTATTGTCTAATGATTTCTGTACTTTTGTTCAGTATGCAGTATGCTGTAGTCTTTTTGTTGCTTATGGTTTTGTTGTCTAATCCTCATCAATACAGATTAAATATCTATGAATGCAGGATAACTTATACATCGTATTTATTTGAACTAGTTTTTTG

mRNA sequence

TCCCTATATTTTTCACTCACAAGATCAACCTTTCTCTTTTCTAATTCCCTTCCCTCCCAATTTTCTCTCTCCTCCTTCCCACACCTTCCCTCCCTTTCCCCCCACCCTTCCCACCAGATCCCTCTCCGTTCCTCAGCCCGAACACCAACCAATGACTCCGGCACCGACACCAATCACGGCGGCGGCAACCGTCAACAACCAGTTCGGCGACACGACGTACACTAAGGTTTTCGTCGGAGGTTTGGCGTGGGAAACTCAGAAAGACACTCTCAGAAACTATTTCCAGCAATTTGGTGATATTTTGGAAGCTGTCGTCATCACTGATAAGGCTACTGCTAGATCCAAGGGCTACGGTTTTGTAACTTTTCGGGAGCCAGAAGCAGCAATGAGGGCATGCCTTGATGCAACTCCAGTGATTGATGGAAGAAGGGCCAATTGCAATCTTGCTTTTTTGGGTGCTCAAAAATCTAAACCTTCCACTCCTTCCCACCACACTACTCCTGGAATAAGCAGGAATGTGAAGGGAATGAACAGCAATGGTGAGAGTGGTTATGGAGGAGCAGCCTTTATTGGAGCAACAGCATCCACTACCTTTCCACATTATGCCATCCAACAAGGGATTCCTTTAGCTCACTTCTACGGGTACCCACCATATTCATCTGATTACACTTACCCTGCGGGTTACTATGGAGTGCATGGAGGAGGAGTAGCCAACCAATACCAGCTGTACGGAGCAGCTGGGGCAGCTGTAGGAGGCATGATGAACTGCTTCTATCCTTATCAACTGCAGTATGGTGATCAAGTGAATGCTGCTGCTGGGGGAAATGCTGCAGCAACTACCGCTTATGCAACTGCTGCGACACAGCCCTATGGCATGCACTACCCCCATCACGGCCTCTACCCGTTCTCTTCTGCTACTTCTCCCCAGCAGTACTACAGTCCTCCCATGTCTTTTGCTGCAGCCACAAACCCTATGCAATCAGGCATAACCATGGCTCTTCAGGCTCCGATTCCTCGTTGTTAATGGGACGTGCTGCAACTGGTTCTCTTTGGTCTAACCAACGGTTCTCTTTTTTACCCTCGCTCATGAACCATCTCCATCGATCTCTTGCCAGACTCCTACATGTATTATGTATAGGCAGTTGGCCGAGGTTGAGAAGCATTTGTGGGTCCCACATAGGGATCACACATTCACACCCCCAAAAAAAAACATCATTTATGCATTCTCATTGCATTTATCATTTTCAAGGAGGTCTTGATCAAAGAGATTATAGTCTCCTGAAAGTGATCATCCATCAACCAACTTGGCTATTTTGGAGAGCGAAGTTGGATTGCATATAGAATTGATCTTACGTTTAGCCTCAGAATAAGGCTTAAACGCGTGACAACTACTACTACTACCAAGTTTAGCTTCAATTGTGCCCCGTTAATAGTGAAGGCATATAGAAGTACATAGCTATTAGTCACACTAACCTAGCTTACTTTGATGTTAAACTAACAAGTCTTGACTATTGATTAGGTCATATCATTAGTCAAGGCTACTTGCTCGTCTAGTATTAGGGCATGGGATGCCCCTTTTACTTGTCATTTTTTGGGGTCATTTTAGCATAAACAAAAATTCATGTGAATTGAAGAACATCATCTAGCAATGGAGCTTCCTCGCGGTTGGGGAATGAATCATCTTTGAGTCGATCATTGTTGGCTCATTGTGGCTAAATATTGGAGTTTTAGCCTTGATTTCATTGTACATTGTTATTATTACTTTTAAGGGGAGATTTTTCTTTTAGTTGATATAATCCCCTTTGATCAGCATGTAGCAATTCTAATACACTGTTTGAACTCCATATATTGGTTAATGGAGTTCATCAGAAAAGACTTCATAACTTTCATGATCCTTCTTCCCCTTCTCCTCAACCCGAAAGTAAGGAGGCGCGGAATGGGACCCACTTGTTCGCTGTTATCTAAGTTTCGCCTTCTGTAGGAACTTGGTCTCACACCATTAGTCAGGGACTGTGGTGTGCTGCTAAGAATAAGACTTGTTAAATGTTAATCTGTAATCTGTAATCTGTACTATTAGTCGTAAAGATTTGATATTCTAATGTTCTGAATTGCGACGATTTATATGTAGTGAACAATTTAGTAGAGATGTTATCTTGTAATAGTAGGAAAAAATGTTGCTTATTGTCTAATGATTTCTGTACTTTTGTTCAGTATGCAGTATGCTGTAGTCTTTTTGTTGCTTATGGTTTTGTTGTCTAATCCTCATCAATACAGATTAAATATCTATGAATGCAGGATAACTTATACATCGTATTTATTTGAACTAGTTTTTTG

Coding sequence (CDS)

ATGACTCCGGCACCGACACCAATCACGGCGGCGGCAACCGTCAACAACCAGTTCGGCGACACGACGTACACTAAGGTTTTCGTCGGAGGTTTGGCGTGGGAAACTCAGAAAGACACTCTCAGAAACTATTTCCAGCAATTTGGTGATATTTTGGAAGCTGTCGTCATCACTGATAAGGCTACTGCTAGATCCAAGGGCTACGGTTTTGTAACTTTTCGGGAGCCAGAAGCAGCAATGAGGGCATGCCTTGATGCAACTCCAGTGATTGATGGAAGAAGGGCCAATTGCAATCTTGCTTTTTTGGGTGCTCAAAAATCTAAACCTTCCACTCCTTCCCACCACACTACTCCTGGAATAAGCAGGAATGTGAAGGGAATGAACAGCAATGGTGAGAGTGGTTATGGAGGAGCAGCCTTTATTGGAGCAACAGCATCCACTACCTTTCCACATTATGCCATCCAACAAGGGATTCCTTTAGCTCACTTCTACGGGTACCCACCATATTCATCTGATTACACTTACCCTGCGGGTTACTATGGAGTGCATGGAGGAGGAGTAGCCAACCAATACCAGCTGTACGGAGCAGCTGGGGCAGCTGTAGGAGGCATGATGAACTGCTTCTATCCTTATCAACTGCAGTATGGTGATCAAGTGAATGCTGCTGCTGGGGGAAATGCTGCAGCAACTACCGCTTATGCAACTGCTGCGACACAGCCCTATGGCATGCACTACCCCCATCACGGCCTCTACCCGTTCTCTTCTGCTACTTCTCCCCAGCAGTACTACAGTCCTCCCATGTCTTTTGCTGCAGCCACAAACCCTATGCAATCAGGCATAACCATGGCTCTTCAGGCTCCGATTCCTCGTTGTTAA

Protein sequence

MTPAPTPITAAATVNNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKATARSKGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGISRNVKGMNSNGESGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPAGYYGVHGGGVANQYQLYGAAGAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTAYATAATQPYGMHYPHHGLYPFSSATSPQQYYSPPMSFAAATNPMQSGITMALQAPIPRC

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo17850	Spo17850	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo17850.1	Spo17850.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17850.1.utr5p.1	Spo17850.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17850.1.CDS.6	Spo17850.1.CDS.6	CDS
Spo17850.1.CDS.5	Spo17850.1.CDS.5	CDS
Spo17850.1.CDS.4	Spo17850.1.CDS.4	CDS
Spo17850.1.CDS.3	Spo17850.1.CDS.3	CDS
Spo17850.1.CDS.2	Spo17850.1.CDS.2	CDS
Spo17850.1.CDS.1	Spo17850.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17850.1.utr3p.1	Spo17850.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17850.1.exon.6	Spo17850.1.exon.6	exon
Spo17850.1.exon.5	Spo17850.1.exon.5	exon
Spo17850.1.exon.4	Spo17850.1.exon.4	exon
Spo17850.1.exon.3	Spo17850.1.exon.3	exon
Spo17850.1.exon.2	Spo17850.1.exon.2	exon
Spo17850.1.exon.1	Spo17850.1.exon.1	exon

Homology

[Close]

BLAST of Spo17850.1 vs. NCBI nr
Match: gi|902149944|gb|KNA05358.1| (hypothetical protein SOVF_191100 [Spinacia oleracea])

HSP 1 Score: 586.6 bits (1511), Expect = 2.300e-164
Identity = 289/290 (99.66%), Postives = 289/290 (99.66%), Query Frame = 1


		  
Query: 1   MTPAPTPITAAATVNNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKA 60
           MTPAPTPITAAATVNNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKA
Sbjct: 1   MTPAPTPITAAATVNNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKA 60

Query: 61  TARSKGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGIS 120
           TARSKGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKS PSTPSHHTTPGIS
Sbjct: 61  TARSKGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSNPSTPSHHTTPGIS 120

Query: 121 RNVKGMNSNGESGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPAGYYG 180
           RNVKGMNSNGESGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPAGYYG
Sbjct: 121 RNVKGMNSNGESGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPAGYYG 180

Query: 181 VHGGGVANQYQLYGAAGAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTAYATAATQPY 240
           VHGGGVANQYQLYGAAGAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTAYATAATQPY
Sbjct: 181 VHGGGVANQYQLYGAAGAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTAYATAATQPY 240

Query: 241 GMHYPHHGLYPFSSATSPQQYYSPPMSFAAATNPMQSGITMALQAPIPRC 291
           GMHYPHHGLYPFSSATSPQQYYSPPMSFAAATNPMQSGITMALQAPIPRC
Sbjct: 241 GMHYPHHGLYPFSSATSPQQYYSPPMSFAAATNPMQSGITMALQAPIPRC 290

[Close]

BLAST of Spo17850.1 vs. NCBI nr
Match: gi|731312960|ref|XP_010677208.1| (PREDICTED: RNA-binding protein 24-B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 489.6 bits (1259), Expect = 3.800e-135
Identity = 251/294 (85.37%), Postives = 260/294 (88.44%), Query Frame = 1


		  
Query: 1   MTPAPTPITAAATVNN----QFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVI 60
           MTPAP  +   A  NN    QFGDTTYTKVFVGGLAWETQKDTLR YF QFGDILEAVVI
Sbjct: 1   MTPAPATLVTPANNNNNNNGQFGDTTYTKVFVGGLAWETQKDTLRTYFHQFGDILEAVVI 60

Query: 61  TDKATARSKGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTT 120
           TDKATARSKGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTT
Sbjct: 61  TDKATARSKGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTT 120

Query: 121 PGISRNVKGMNSNGESGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPA 180
            GISRNVKGMNSNGESGY   AF+GATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPA
Sbjct: 121 HGISRNVKGMNSNGESGY-ATAFLGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPA 180

Query: 181 GYYGVHGGGVANQYQLYGAAGAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTAYATAA 240
           GYYGVH GGVANQYQ+YGAAGAA GGMM C+YPY LQ+GDQ+N A  G  AAT AYA A 
Sbjct: 181 GYYGVH-GGVANQYQMYGAAGAAAGGMMGCYYPYHLQFGDQINTAGAG--AATAAYANAG 240

Query: 241 TQPYGMHYPHHGLYPFSSATSPQQYYSPPMSFAAATNPMQSGITMALQAPIPRC 291
           TQPYG+HY H  L+PFSSATSPQQYYSPPMSFAAATNPMQSG+ MALQAPI RC
Sbjct: 241 TQPYGLHYSHQ-LFPFSSATSPQQYYSPPMSFAAATNPMQSGMNMALQAPILRC 289

[Close]

BLAST of Spo17850.1 vs. NCBI nr
Match: gi|568849097|ref|XP_006478306.1| (PREDICTED: RNA-binding protein 24 isoform X2 [Citrus sinensis])

HSP 1 Score: 294.3 bits (752), Expect = 2.400e-76
Identity = 175/295 (59.32%), Postives = 204/295 (69.15%), Query Frame = 1


		  
Query: 5   PTPITAAATVNNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKATARS 64
           P    AAA    QFGDTTYTKVFVGGLAWETQK+T+  YF+QFG+ILEAVVITDKAT RS
Sbjct: 4   PVSAQAAAAGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRS 63

Query: 65  KGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGISRNVK 124
           KGYGFVTFREPEAAM+AC+DA PVIDGRRANCNLA LG Q+SKPSTP H    G   N++
Sbjct: 64  KGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACLGVQRSKPSTPKHGGGGG-RNNLR 123

Query: 125 GMNSNGESGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPAGYYGVHGG 184
            M++    G+GG  F  +TA+ TFPHYAIQQGIP  + YGY PYS+DYTYP  YY V+GG
Sbjct: 124 LMSTFQNGGFGGTTF-PSTAAATFPHYAIQQGIPF-NLYGYSPYSADYTYPTSYYNVYGG 183

Query: 185 GVANQYQLYGAAGAAVGGMMN---------CFYPYQLQYGDQVNAAAGGNAAATTAYATA 244
             A QY +YG  G A GGMM           +YPY LQ+G+       G  AATT Y + 
Sbjct: 184 AAA-QYPMYG-NGHAAGGMMTGGAAAAAAAAYYPY-LQFGE-------GTGAATTGYTSG 243

Query: 245 ATQPYGMHYPHHGLYPFS---SATSPQQYYSPPMSFAAATNPMQSGIT-MALQAP 287
             Q YG+ YPHH L+P+S   +A    Q+Y PPMS  A T  +QSG+T MAL AP
Sbjct: 244 --QGYGVQYPHH-LFPYSTINAAAGYPQHYGPPMSI-APTPALQSGVTNMALHAP 281

[Close]

BLAST of Spo17850.1 vs. NCBI nr
Match: gi|567898646|ref|XP_006441811.1| (hypothetical protein CICLE_v10021520mg [Citrus clementina])

HSP 1 Score: 294.3 bits (752), Expect = 2.400e-76
Identity = 175/295 (59.32%), Postives = 204/295 (69.15%), Query Frame = 1


		  
Query: 5   PTPITAAATVNNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKATARS 64
           P    AAA    QFGDTTYTKVFVGGLAWETQK+T+  YF+QFG+ILEAVVITDKAT RS
Sbjct: 4   PVSAQAAAAGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRS 63

Query: 65  KGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGISRNVK 124
           KGYGFVTFREPEAAM+AC+DA PVIDGRRANCNLA LG Q+SKPSTP H    G   N++
Sbjct: 64  KGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACLGVQRSKPSTPKH--GGGGRNNLR 123

Query: 125 GMNSNGESGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPAGYYGVHGG 184
            M++    G+GG  F  +TA+ TFPHYAIQQGIP  + YGY PYS+DYTYP  YY V+GG
Sbjct: 124 LMSTFQNGGFGGTTF-PSTAAATFPHYAIQQGIPF-NLYGYSPYSADYTYPTSYYNVYGG 183

Query: 185 GVANQYQLYGAAGAAVGGMMN---------CFYPYQLQYGDQVNAAAGGNAAATTAYATA 244
             A QY +YG  G A GGMM           +YPY LQ+G+       G  AATT Y + 
Sbjct: 184 AAA-QYPMYG-NGHAAGGMMTGGAAAAAAAAYYPY-LQFGE-------GTGAATTGYTSG 243

Query: 245 ATQPYGMHYPHHGLYPFS---SATSPQQYYSPPMSFAAATNPMQSGIT-MALQAP 287
             Q YG+ YPHH L+P+S   +A    Q+Y PPMS  A T  +QSG+T MAL AP
Sbjct: 244 --QGYGVQYPHH-LFPYSTINAAAGYPQHYGPPMSI-APTPALQSGVTNMALHAP 280

[Close]

BLAST of Spo17850.1 vs. NCBI nr
Match: gi|1012035725|ref|XP_015953111.1| (PREDICTED: RNA-binding protein 38-like [Arachis duranensis])

HSP 1 Score: 292.7 bits (748), Expect = 6.900e-76
Identity = 168/296 (56.76%), Postives = 201/296 (67.91%), Query Frame = 1


		  
Query: 6   TPITAAATVNNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKATARSK 65
           TP+  A     QFGDTTYTKVFVGGLAWETQK+T++ YF+QFG+ILEAVVITDKAT RSK
Sbjct: 2   TPVNLAG----QFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSK 61

Query: 66  GYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGISRNVKG 125
           GYGFVTFREPEAAMRAC+DA PVIDGRRANCNLA LG Q+SKPSTP H    G  RN + 
Sbjct: 62  GYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH---GGSGRNFRV 121

Query: 126 MNSNGESGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPAGYYGVHGGG 185
           M S  ++G+GG       ++ TFPHYAIQQGIP  + YGY PYS DYTYP  YY V+GG 
Sbjct: 122 MGS-FQTGFGGGVGSAFPSAATFPHYAIQQGIPY-NVYGYSPYSPDYTYPTSYYSVYGGA 181

Query: 186 VANQYQLY----------GAAGAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTAYATA 245
              QY +Y          GA  AA       FYPY +QYG +    +GG  ++  +Y T+
Sbjct: 182 ATAQYPVYGTGHAGGMMTGAGAAAAAAAATAFYPY-MQYGGE---GSGGGGSSGGSYTTS 241

Query: 246 ATQPYGMHYPHHGLY---PFSSATSPQQYYSPPMSFAAATNPMQSGITMALQAPIP 289
             Q YG++YP H L+   P +S     Q+Y+ PMS A +   +QSG+TMALQAPIP
Sbjct: 242 G-QGYGVNYPPHQLFQYSPIASTGGYAQHYATPMSLAPSP-ALQSGVTMALQAPIP 282

[Close]

BLAST of Spo17850.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFA6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_191100 PE=4 SV=1)

HSP 1 Score: 586.6 bits (1511), Expect = 1.600e-164
Identity = 289/290 (99.66%), Postives = 289/290 (99.66%), Query Frame = 1


		  
Query: 1   MTPAPTPITAAATVNNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKA 60
           MTPAPTPITAAATVNNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKA
Sbjct: 1   MTPAPTPITAAATVNNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKA 60

Query: 61  TARSKGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGIS 120
           TARSKGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKS PSTPSHHTTPGIS
Sbjct: 61  TARSKGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSNPSTPSHHTTPGIS 120

Query: 121 RNVKGMNSNGESGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPAGYYG 180
           RNVKGMNSNGESGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPAGYYG
Sbjct: 121 RNVKGMNSNGESGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPAGYYG 180

Query: 181 VHGGGVANQYQLYGAAGAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTAYATAATQPY 240
           VHGGGVANQYQLYGAAGAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTAYATAATQPY
Sbjct: 181 VHGGGVANQYQLYGAAGAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTAYATAATQPY 240

Query: 241 GMHYPHHGLYPFSSATSPQQYYSPPMSFAAATNPMQSGITMALQAPIPRC 291
           GMHYPHHGLYPFSSATSPQQYYSPPMSFAAATNPMQSGITMALQAPIPRC
Sbjct: 241 GMHYPHHGLYPFSSATSPQQYYSPPMSFAAATNPMQSGITMALQAPIPRC 290

[Close]

BLAST of Spo17850.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D6U5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g009850 PE=4 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 2.700e-135
Identity = 251/294 (85.37%), Postives = 260/294 (88.44%), Query Frame = 1


		  
Query: 1   MTPAPTPITAAATVNN----QFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVI 60
           MTPAP  +   A  NN    QFGDTTYTKVFVGGLAWETQKDTLR YF QFGDILEAVVI
Sbjct: 1   MTPAPATLVTPANNNNNNNGQFGDTTYTKVFVGGLAWETQKDTLRTYFHQFGDILEAVVI 60

Query: 61  TDKATARSKGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTT 120
           TDKATARSKGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTT
Sbjct: 61  TDKATARSKGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTT 120

Query: 121 PGISRNVKGMNSNGESGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPA 180
            GISRNVKGMNSNGESGY   AF+GATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPA
Sbjct: 121 HGISRNVKGMNSNGESGY-ATAFLGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPA 180

Query: 181 GYYGVHGGGVANQYQLYGAAGAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTAYATAA 240
           GYYGVH GGVANQYQ+YGAAGAA GGMM C+YPY LQ+GDQ+N A  G  AAT AYA A 
Sbjct: 181 GYYGVH-GGVANQYQMYGAAGAAAGGMMGCYYPYHLQFGDQINTAGAG--AATAAYANAG 240

Query: 241 TQPYGMHYPHHGLYPFSSATSPQQYYSPPMSFAAATNPMQSGITMALQAPIPRC 291
           TQPYG+HY H  L+PFSSATSPQQYYSPPMSFAAATNPMQSG+ MALQAPI RC
Sbjct: 241 TQPYGLHYSHQ-LFPFSSATSPQQYYSPPMSFAAATNPMQSGMNMALQAPILRC 289

[Close]

BLAST of Spo17850.1 vs. UniProtKB/TrEMBL
Match: V4TYP1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021520mg PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.600e-76
Identity = 175/295 (59.32%), Postives = 204/295 (69.15%), Query Frame = 1


		  
Query: 5   PTPITAAATVNNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKATARS 64
           P    AAA    QFGDTTYTKVFVGGLAWETQK+T+  YF+QFG+ILEAVVITDKAT RS
Sbjct: 4   PVSAQAAAAGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRS 63

Query: 65  KGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGISRNVK 124
           KGYGFVTFREPEAAM+AC+DA PVIDGRRANCNLA LG Q+SKPSTP H    G   N++
Sbjct: 64  KGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACLGVQRSKPSTPKH--GGGGRNNLR 123

Query: 125 GMNSNGESGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPAGYYGVHGG 184
            M++    G+GG  F  +TA+ TFPHYAIQQGIP  + YGY PYS+DYTYP  YY V+GG
Sbjct: 124 LMSTFQNGGFGGTTF-PSTAAATFPHYAIQQGIPF-NLYGYSPYSADYTYPTSYYNVYGG 183

Query: 185 GVANQYQLYGAAGAAVGGMMN---------CFYPYQLQYGDQVNAAAGGNAAATTAYATA 244
             A QY +YG  G A GGMM           +YPY LQ+G+       G  AATT Y + 
Sbjct: 184 AAA-QYPMYG-NGHAAGGMMTGGAAAAAAAAYYPY-LQFGE-------GTGAATTGYTSG 243

Query: 245 ATQPYGMHYPHHGLYPFS---SATSPQQYYSPPMSFAAATNPMQSGIT-MALQAP 287
             Q YG+ YPHH L+P+S   +A    Q+Y PPMS  A T  +QSG+T MAL AP
Sbjct: 244 --QGYGVQYPHH-LFPYSTINAAAGYPQHYGPPMSI-APTPALQSGVTNMALHAP 280

[Close]

BLAST of Spo17850.1 vs. UniProtKB/TrEMBL
Match: A0A067KP04_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07989 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 5.900e-74
Identity = 164/280 (58.57%), Postives = 197/280 (70.36%), Query Frame = 1


		  
Query: 12  ATVNNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKATARSKGYGFVT 71
           A +  QFGDTTYTKVFVGGLAWETQKDT++ YF+QFG+ILEAVVITDKAT RSKGYGFVT
Sbjct: 4   ANLAGQFGDTTYTKVFVGGLAWETQKDTMKKYFEQFGEILEAVVITDKATGRSKGYGFVT 63

Query: 72  FREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGISRNVKGMNSNGE 131
           FR+PEAAM+AC+DA PVIDGRRANCNLA LG Q+SKPSTP H    G  RN + M S+ +
Sbjct: 64  FRDPEAAMKACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH--GGGAGRNFRVM-SSFQ 123

Query: 132 SGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPAGYYGVHGGGVANQYQ 191
           +G+GG       ++ +FPHYAIQQGIP  + YGY PYS DY+YP  YY V+GG  A QY 
Sbjct: 124 TGFGGGVGTAFPSAASFPHYAIQQGIPY-NVYGYSPYSPDYSYPTSYYSVYGGATA-QYP 183

Query: 192 LYGAA-GAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTAYATAATQPYGMHYPHHGLY 251
           +YG   G  + G    FYPY LQ+G+       GN  A T YA+   Q YG+ YPHH ++
Sbjct: 184 MYGTGPGGMMTGAATAFYPY-LQFGE-------GNGGAATGYASG--QSYGIQYPHH-MF 243

Query: 252 PFSSATS----PQQYYSPPMSFAAATNPMQSGITMALQAP 287
            +S+  S    PQQ Y  PMS  A T  +QSG+T+AL AP
Sbjct: 244 QYSAINSTGGYPQQ-YGAPMSL-APTAALQSGVTVALPAP 265

[Close]

BLAST of Spo17850.1 vs. UniProtKB/TrEMBL
Match: V4TNP8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021520mg PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.000e-73
Identity = 165/277 (59.57%), Postives = 192/277 (69.31%), Query Frame = 1


		  
Query: 5   PTPITAAATVNNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKATARS 64
           P    AAA    QFGDTTYTKVFVGGLAWETQK+T+  YF+QFG+ILEAVVITDKAT RS
Sbjct: 4   PVSAQAAAAGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRS 63

Query: 65  KGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGISRNVK 124
           KGYGFVTFREPEAAM+AC+DA PVIDGRRANCNLA LG Q+SKPSTP H    G   N++
Sbjct: 64  KGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACLGVQRSKPSTPKH--GGGGRNNLR 123

Query: 125 GMNSNGESGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPAGYYGVHGG 184
            M++    G+GG  F  +TA+ TFPHYAIQQGIP  + YGY PYS+DYTYP  YY V+GG
Sbjct: 124 LMSTFQNGGFGGTTF-PSTAAATFPHYAIQQGIPF-NLYGYSPYSADYTYPTSYYNVYGG 183

Query: 185 GVANQYQLYGAAGAAVGGMMN---------CFYPYQLQYGDQVNAAAGGNAAATTAYATA 244
             A QY +YG  G A GGMM           +YPY LQ+G+       G  AATT Y + 
Sbjct: 184 AAA-QYPMYG-NGHAAGGMMTGGAAAAAAAAYYPY-LQFGE-------GTGAATTGYTSG 243

Query: 245 ATQPYGMHYPHHGLYPFS---SATSPQQYYSPPMSFA 270
             Q YG+ YPHH L+P+S   +A    Q+Y PPMS A
Sbjct: 244 --QGYGVQYPHH-LFPYSTINAAAGYPQHYGPPMSIA 263

[Close]

BLAST of Spo17850.1 vs. ExPASy Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.100e-28
Identity = 100/271 (36.90%), Postives = 130/271 (47.97%), Query Frame = 1


		  
Query: 8   ITAAATVNNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKATARSKGY 67
           +T +  VN  FGDT  TKVFVGGLAW+T K+ + ++F ++GDILEAV+I+DK T RSKGY
Sbjct: 1   MTTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGY 60

Query: 68  GFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGA--QKSKPSTPSHHTTPGISRNVKG 127
           GFVTF++ +AA RAC D+TP+I+GRRANCNLA LG   +KS   T         +R    
Sbjct: 61  GFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNRATPP 120

Query: 128 MNSNGESGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPAGYYGVHGGG 187
              N    Y  + F      T   H   QQ      FYGYP   S Y  P   +    G 
Sbjct: 121 HVGNHSQWYYPSGF------TNQQHQ--QQNHQAVPFYGYP---SAYVAPNMTFNQKVGY 180

Query: 188 VANQYQLYGAAGAAVGGMMNCFYPY-----QLQYGDQVNAAAGGNAAATTAYATAATQPY 247
           V   Y             MN +Y       Q Q   Q               A +   P+
Sbjct: 181 VGGTY-------------MNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPF 240

Query: 248 GMHYPHHGL----YPFSSATSPQQYYSPPMS 268
              YP+H      +P  S + P  + +PP+S
Sbjct: 241 YTVYPYHQSQAIGFPQPSFSKPLSFSTPPIS 247

[Close]

BLAST of Spo17850.1 vs. ExPASy Swiss-Prot
Match: RBM24_MOUSE (RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.200e-27
Identity = 96/241 (39.83%), Postives = 123/241 (51.04%), Query Frame = 1


		  
Query: 20  DTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKATARSKGYGFVTFREPEAAM 79
           DTTYTK+FVGGL + T   +LR YF+ FGDI EAVVITD+ T +S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 80  RACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGISRNVKGMNSNGESGYGGAAF 139
           RAC D  P+IDGR+AN NLA+LGA   KP        PG +  V+ ++          A 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA---KPRI----MQPGFAFGVQQLH---------PAL 126

Query: 140 I----GATASTTFPHYAIQQGIPLAHFYGYPPYSS-----DYT------YPAGYYGVHGG 199
           I    G  A   +P   +Q G+ + H       +S     DYT      Y A        
Sbjct: 127 IQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAA 186

Query: 200 GVANQYQLYGAAGAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTAYATAATQPYGMHY 246
              +QY  Y A+ AA G +    Y Y +Q    + AAA G AAA  A A AA   +G + 
Sbjct: 187 AAYDQYP-YAASPAAAGYVTTGGYSYAVQ--QPITAAAPGTAAAAAA-AAAAAAAFGQYQ 227

[Close]

BLAST of Spo17850.1 vs. ExPASy Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.700e-27
Identity = 95/241 (39.42%), Postives = 123/241 (51.04%), Query Frame = 1


		  
Query: 20  DTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKATARSKGYGFVTFREPEAAM 79
           DTTYTK+FVGGL + T   +LR YF+ FG+I EAVVITD+ T +S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 80  RACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGISRNVKGMNSNGESGYGGAAF 139
           RAC D  P+IDGR+AN NLA+LGA   KP        PG +  V+ ++          A 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA---KPRI----MQPGFAFGVQQLH---------PAL 126

Query: 140 I----GATASTTFPHYAIQQGIPLAHFYGYPPYSS-----DYT------YPAGYYGVHGG 199
           I    G  A   +P   +Q G+ + H       +S     DYT      Y A        
Sbjct: 127 IQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAA 186

Query: 200 GVANQYQLYGAAGAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTAYATAATQPYGMHY 246
              +QY  Y A+ AA G +    Y Y +Q    + AAA G AAA  A A AA   +G + 
Sbjct: 187 AAYDQYP-YAASPAAAGYVTAGGYGYAVQ--QPITAAAPGTAAAAAA-AAAAAAAFGQYQ 227

[Close]

BLAST of Spo17850.1 vs. ExPASy Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.000e-26
Identity = 89/222 (40.09%), Postives = 113/222 (50.90%), Query Frame = 1


		  
Query: 20  DTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKATARSKGYGFVTFREPEAAM 79
           DTTYTK+FVGGL + T   +LR YF+ FGDI EAVVITD+ T +S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 80  RACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGISRNVKGMNSNGESGYGGAAF 139
           RAC D  P+IDGR+AN NLA+LGA   KP        PG +  V+ ++          A 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA---KPRI----MQPGFAFGVQQIH---------PAL 126

Query: 140 I----GATASTTFPHYAIQQGIPLAHFYGYPPYSS----DYTYP--AGYYGVHGGGVANQ 199
           I    G  A   +PH  +Q G+ + H       S+    DYT    A Y        A  
Sbjct: 127 IQRPFGIPAHYVYPHAFVQPGVVIPHVQQAAAASTSPYIDYTSAAYAQYSAAAAAAAAYD 186

Query: 200 YQLYGAAGAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTA 232
              Y A+ A  G +    Y Y +     + AAA G AAA  A
Sbjct: 187 QYPYAASPATTGYVTTAGYGYAVP--QPLTAAAPGTAAAAAA 210

[Close]

BLAST of Spo17850.1 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.300e-26
Identity = 89/221 (40.27%), Postives = 114/221 (51.58%), Query Frame = 1


		  
Query: 20  DTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKATARSKGYGFVTFREPEAAM 79
           DTTYTK+FVGGL + T   +LR YF+ FGDI EAVVITD+ T +S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 80  RACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGISRNVKGMNSNGESGYGGAAF 139
           RAC D  P+IDGR+AN NLA+LGA   KP        PG +  V+ ++          A 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA---KPRI----MQPGFAFGVQQIH---------PAL 126

Query: 140 I----GATASTTFPHYAIQQGIPLAHFYGYPPYSS----DYTYPA-GYYGVHGGGVANQY 199
           I    G  A   +P   +Q G+ + H       S+    DYT  A   Y       A   
Sbjct: 127 IQRPFGIPAHYVYPQAYVQPGVVIPHVQPTAATSTSPYIDYTSAAYAQYSAAAAAAAYDQ 186

Query: 200 QLYGAAGAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTA 232
             Y A+ AA G +    Y Y +     + AAA G+AAA  A
Sbjct: 187 YPYAASPAATGYVTAAGYGYAVP--QPLTAAAPGSAAAAAA 209

[Close]

BLAST of Spo17850.1 vs. TAIR (Arabidopsis)
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 186.8 bits (473), Expect = 1.900e-47
Identity = 121/272 (44.49%), Postives = 154/272 (56.62%), Query Frame = 1


		  
Query: 19  GDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKATARSKGYGFVTFREPEAA 78
           GDTTYTKVFVGGLAWET K+T++ +F+QFG+ILEAVVITDKA+ RSKGYGFVTFRE EAA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 79  MRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGISRNVKGMNSNGESGYGGAA 138
             AC+DATPVIDGRRANCNLA LG Q+SKPSTP +H   G   N++ M S  ++G+G   
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTP-NHGGGGRINNMRVMMSTMQTGFGPPP 127

Query: 139 FIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDY-TYPAGYYGVHGGGVANQYQLYGAAG 198
                  T +PH      +PL + +GY PYS DY ++P   YG++G     QY +YG   
Sbjct: 128 PPQPPTFTHYPH------LPL-NLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYGNRN 187

Query: 199 AAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTAYATAATQPYGMHYPHHGLYPFSSATS 258
           +  GG+                AAA   A+AT  Y                 Y   S+ +
Sbjct: 188 SGGGGL---------------TAAA---ASATPFYPCGGGHGGVQFSQPQPFYHHLSSYN 247

Query: 259 PQQYYSPPMSFAAATNPMQSGITMALQAPIPR 290
           P  Y  P  S    +    S  T +   P+ +
Sbjct: 248 PHHYSPPTFSMQQGSRNRLSASTTSYSLPLKK 253

[Close]

BLAST of Spo17850.1 vs. TAIR (Arabidopsis)
Match: AT1G33470.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 185.3 bits (469), Expect = 5.500e-47
Identity = 121/247 (48.99%), Postives = 150/247 (60.73%), Query Frame = 1


		  
Query: 20  DTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKATARSKGYGFVTFREPEAAM 79
           DTT+TKVFVGGLAWET K +LRNYF+QFGDI+EAVVITDK++ RSKGYGFVTF +PEAA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 80  RACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGISRNVKGMNSNGESGYGGAAF 139
           +AC+D  PVIDGRRANCNLA  G Q+SKPS+P H    G  R +K + S  ++ +G AA 
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGG--RGMK-VTSPFKTHFGTAA- 122

Query: 140 IGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPA-GYYGVHGGGVANQYQLYG---- 199
               +   F HY     +P  + +G+  YS DY YP   YY V+GG  A Q+ +YG    
Sbjct: 123 TAIPSPLPFSHYT----LPYTNPFGFSSYSMDYNYPTQSYYNVYGGATA-QHPMYGSGPM 182

Query: 200 ---AAGAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTAYATAATQPYGMHYPHHGLYP 259
              AA  A G     FYPY LQ+ +      G        +    + P G +YPHH   P
Sbjct: 183 TGVAAAPAAG-----FYPY-LQFAEGNGPVTGYAPLHYPNHMFHYSAP-GGNYPHHNGSP 233

[Close]

BLAST of Spo17850.1 vs. TAIR (Arabidopsis)
Match: AT2G46780.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 183.3 bits (464), Expect = 2.100e-46
Identity = 133/299 (44.48%), Postives = 160/299 (53.51%), Query Frame = 1


		  
Query: 15  NNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKATARSKGYGFVTFRE 74
           NN   DT  TK+FVGGLAWETQ+DT+R YF+QFG+I+EAVVITDK T RSKGYGFVTF+E
Sbjct: 13  NNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKE 72

Query: 75  PEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGISRNVKGMNSNGESGY 134
            EAAMRAC +  PVIDGRRANCNLA LGAQK +P T   H T        G   +  SG 
Sbjct: 73  AEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGT--------GRFRSPGSGV 132

Query: 135 GGAA----FIGATASTTFPHYAIQQGIPLAHF----YGYPPYSSDYTYPAGYYGVH--GG 194
           G  A    F G+++S+ F H   QQ      F    YG+  YS +  YP  YY  H  GG
Sbjct: 133 GLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPMNYYNHHLYGG 192

Query: 195 GVANQYQLYGAAGAAVGGMMNCFYPYQLQYGDQVNAAAGGNAAATTAYA----------T 254
              + Y  + +AG+   GM + FYPY  QY    NAA   N A     A          T
Sbjct: 193 QQFSPYMGHPSAGST--GMFHGFYPYYPQY----NAAQSSNQAQAQVQAQHHQGFSFQYT 252

Query: 255 AATQPYGMHYPHHGLYP-------FSSATSPQQYYSPPMSFA----AATNPMQSGITMA 283
           A   P  + YP+    P       FSS   P    S P S A    ++++P  S  T A
Sbjct: 253 APPAPPLLQYPYLPHQPHFSSQQQFSSQQPPPPILSLPTSLALSLPSSSSPSSSTSTSA 297

[Close]

BLAST of Spo17850.1 vs. TAIR (Arabidopsis)
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 167.5 bits (423), Expect = 1.200e-41
Identity = 100/188 (53.19%), Postives = 118/188 (62.77%), Query Frame = 1


		  
Query: 14  VNNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKATARSKGYGFVTFR 73
           +N+ FGDTT+TKVFVGGLAWETQ +TLR +F Q+GDILEAVVITDK T RSKGYGFVTFR
Sbjct: 14  LNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFR 73

Query: 74  EPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGISRNVKGMNSNGESG 133
           +PEAA RAC+D TP+IDGRRANCNLA LG  +           PG  R       + +S 
Sbjct: 74  DPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGSVQSP 133

Query: 134 YGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTY--PAGYYGVHGGGVANQY- 193
            G     G+      P Y  QQG+   + YG  PY  DY Y    G+YG + G    QY 
Sbjct: 134 RG--LHFGSHPYHQPPTYNYQQGV--VYPYGVTPYGPDYMYSQSQGFYGPYMG---QQYL 193

Query: 194 QLYGAAGA 199
           Q+YG  GA
Sbjct: 194 QVYGVPGA 194

[Close]

BLAST of Spo17850.1 vs. TAIR (Arabidopsis)
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 155.6 bits (392), Expect = 4.600e-38
Identity = 96/199 (48.24%), Postives = 117/199 (58.79%), Query Frame = 1


		  
Query: 1   MTPAPTPITAAATVNNQFGDTTYTKVFVGGLAWETQKDTLRNYFQQFGDILEAVVITDKA 60
           M   P P +    +N+ FGDTT+TKVFVGGLAWETQ +TLR +F+Q+G+ILEAVVI DK 
Sbjct: 1   MAYQPVPGSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKN 60

Query: 61  TARSKGYGFVTFREPEAAMRACLDATPVIDGRRANCNLAFLGAQKSKPSTPSHHTTPGIS 120
           T RSKGYGFVTFR+PEAA RAC D TP+IDGRRANCNLA LG  +           PG  
Sbjct: 61  TGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRL 120

Query: 121 RNVKGMNSNGESGYGGAAFIGATASTTFPHYAIQQGIPLAHFYGYPPYSSDYTYPAGYYG 180
           R       N +   G  + IG         Y  QQG+   + YG   Y  +Y Y     G
Sbjct: 121 RPASPYIGNVQGPRG--SLIGNYPYQQPLPYNYQQGV--VYPYGVTAYGPEYMYSQS-QG 180

Query: 181 VHGGGVANQY-QLYGAAGA 199
           ++   +  QY Q+YG  GA
Sbjct: 181 LYSPYMGQQYLQVYGVPGA 194

The following BLAST results are available for this feature:

BLAST of Spo17850.1 vs. NCBI nr
BLAST of Spo17850.1 vs. UniProtKB/TrEMBL
BLAST of Spo17850.1 vs. ExPASy Swiss-Prot
BLAST of Spo17850.1 vs. TAIR (Arabidopsis)

BLAST of Spo17850.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902149944\|gb\|KNA05358.1\|	2.3e-164	99.6	hypothetical protein SOVF_1911...	[more]
gi\|731312960\|ref\|XP_010677208.1\|	3.8e-135	85.3	PREDICTED: RNA-binding protein...	[more]
gi\|568849097\|ref\|XP_006478306.1\|	2.4e-76	59.3	PREDICTED: RNA-binding protein...	[more]
gi\|567898646\|ref\|XP_006441811.1\|	2.4e-76	59.3	hypothetical protein CICLE_v10...	[more]
gi\|1012035725\|ref\|XP_015953111.1\|	6.9e-76	56.7	PREDICTED: RNA-binding protein...	[more]

BLAST of Spo17850.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QFA6_SPIOL	1.6e-164	99.6	Uncharacterized protein OS=Spi...	[more]
A0A0J8D6U5_BETVU	2.7e-135	85.3	Uncharacterized protein OS=Bet...	[more]
V4TYP1_9ROSI	1.6e-76	59.3	Uncharacterized protein OS=Cit...	[more]
A0A067KP04_JATCU	5.9e-74	58.5	Uncharacterized protein OS=Jat...	[more]
V4TNP8_9ROSI	1.0e-73	59.5	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo17850.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
ARP1_ARATH	4.1e-28	36.9	Probable RNA-binding protein A...	[more]
RBM24_MOUSE	1.2e-27	39.8	RNA-binding protein 24 OS=Mus ...	[more]
RBM24_HUMAN	7.7e-27	39.4	RNA-binding protein 24 OS=Homo...	[more]
RBM24_XENTR	1.0e-26	40.0	RNA-binding protein 24 OS=Xeno...	[more]
RB24A_XENLA	1.3e-26	40.2	RNA-binding protein 24-A OS=Xe...	[more]

BLAST of Spo17850.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G22910.3	1.9e-47	44.4	RNA-binding (RRM/RBD/RNP motif...	[more]
AT1G33470.1	5.5e-47	48.9	RNA-binding (RRM/RBD/RNP motif...	[more]
AT2G46780.1	2.1e-46	44.4	RNA-binding (RRM/RBD/RNP motif...	[more]
AT1G20880.1	1.2e-41	53.1	RNA-binding (RRM/RBD/RNP motif...	[more]
AT1G76460.1	4.6e-38	48.2	RNA-binding (RRM/RBD/RNP motif...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 26..81 score: 9.3
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 25..97 score: 2.4
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 24..101 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 10..100 score: 1.6
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 15..100 score: 6.31
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 20..105 score: 1.7
None	No IPR available	PANTHER	PTHR24012:SF421	SUBFAMILY NOT NAMED	coord: 20..105 score: 1.7

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding