Spo17908.1 (mRNA) | SpinachBase

Overview


Name	Spo17908.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	BnaC01g25020D protein
Location	SpoScf_00924 : 181866 .. 184052 (-)
Sequence length	1351

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTGATGTTTTGGTTTGGTCAAAGTGCAGGAGAAACATGTCAATGGAGCCAAAATCTCTCTCCTCCTGGGATTACCTAATTCTCCTCTTCGTACGCCCTTCTCTCGCCCTTCTCTTTGTTCTTTTCGTCCTCCTCTTAGGTAATTCCAACAAACTGTGAATCTGATTATGGATTGATTTTGATTAATTGATTGATTTGGATTAATTAATGGATGAATAATCAAATCTTGTAATCTAATGTTGCAGGTTGGTGGATGGCGTGGAAATTGGTGTTAGTTCATGTTCCTTTGGTACAAGAAATCTTTGGGTTGCGTAAAAAAACAACCAAACCCAAGATTCCAGAGCGTCGCTTCTCTCAATTCTACAACTCCCGTCAAACAAGTAAAAGTCAACATTAGGAGACCCTCTTTAAACTGTTTGGTTTGTGTCATTCACTGTTAATTGTTAAATGGTTTTGCATATTTCAAATGAGCTTTCTTTATTAAAGTTATTGTGATTGAGAAGACGCAAAGAGATTGATTTTACTATTATACGGAGTAGCCACCATTATCGAATCCGTGTGTAGAAGCTGCTGGGAGAATGTTATGAATATGAACATAGGAATATGACTGGCTGCTTAGTGCCTTACTGAGGTGATGCTGGAGTTGAGAAATAGGTAAATTCTGCAGTTGGTTACTTTGCATGCTATATTTTTTGCTGAGAATTTTAGCTGCAGTAGATCTGTTTAGCATCTAACCAAAGTTCAAGTTCAGCTTATTCTGTTGGTGTATTCCAACATGGTATTTGCCAGGCAAGTTGTTCTAGCTTCTGGAGTTTAAGAATACAGAAAGGATGGGTTATGCACAACTATACAGAACCTGCCAATCAACAGACTAAGTAGTCGTATGCTTCACACTTTTTTTTATCAGTAGACTTGTTAGTTCGTGTTCATCACTCTGATTTTTTGATGGTGCTGACTGCTGACTGCTGACAGCTGATCGAGTTGCTCCAGTTTTTGTAACTTTTTGTTGTCAAATTAAGTACACAAGATGATGTTTTATTCATAAATTGGAATTCAGTTGTGTTCTCTCAACACAGTTAATAATGTTCAAAGAATTTATTCTTGTAATTATGTAGTGTTGGCCTCCCTCTTTTTTCTGTTTACATTGCACAAATTGACATTGACACCCTCTGCTTGTAACTTGCTTTCCACATTCTAGAAAAGCCATATTATCAAGCAGGCAAGCACTCAGCCATACTAACAAATGCAAGATGCCAAATATTGACTACCACTCTCAAGATTAGATGAATCCGGTCCATGAGAATCATATTCGATGACAAAATGCGTACTAAATAATAACACAAGGCGTGTTTTATTTCTCTTCCCCATAATAAGATTCTTTTCATGAGACATACAAAAACCATATGTATACAACAAAAAAATAGTCCTTGTCTTATTGATTGTATCCTTAATTTTGTGCATGAACTACCATTTCAGATTCGATTCAATACACTACAAGTCTACAACTTACGGAGAACAATTTATGAGACAGCAGGTACACAGCAGCTGTAAATAGATAATAATACTATAGTGCATTCATTAGCCATCTCGGTAACACCAGTGATGCTTTCATCCCAAGCCTACTCAAGAACAAGGCATATAGGATGTGCAGAAGAAATACGAAGAAGCAACAGTTTAACAATAGCTGCCAGAAAAGAAGGTTGTAAGCTTGACTTATACGTAATAGATAAATTGAAAATACAAATGGTTTTTTTTTGTTTGATGTTTGGTTGGATCTAGAAGTCTTACCAGAGTACCAAATATAGCATATATCGTATTCATTGATGGAACTGTATTTAATCCTAATGAGTTGAATATCAAGGTGAGGGTAGCATGTACATTGACGGTGATCTGCAACAAAAGAATAACGCTGTAAGGTGCAATCTTGTGTCCGACCACATGAAATATACAAGTTATATACAAAAGGATTCAATTAATTACCAAAGCAAGTATGTTTTCCCTTATCAAGAACGAGGATGTTAGAACATATCCTAACGCTCCTATTGCTCGAACCTGCATCAAAAAAAAAAAAGAAAAAAAGTTGCCCTCGCTATGCAACAACTGAAAGTAGCTTAACAAAATCTGAAGCAATTGACCTTTTTAGGCAAAGGTGGAAAGAACTATACCAATGTGCACAAGAAGATCG

mRNA sequence

TATTTGATGTTTTGGTTTGGTCAAAGTGCAGGAGAAACATGTCAATGGAGCCAAAATCTCTCTCCTCCTGGGATTACCTAATTCTCCTCTTCGTACGCCCTTCTCTCGCCCTTCTCTTTGTTCTTTTCGTCCTCCTCTTAGGTTGGTGGATGGCGTGGAAATTGGTGTTAGTTCATGTTCCTTTGGTACAAGAAATCTTTGGGTTGCGTAAAAAAACAACCAAACCCAAGATTCCAGAGCGTCGCTTCTCTCAATTCTACAACTCCCGTCAAACAAGTAAAAGTCAACATTAGGAGACCCTCTTTAAACTGTTTGGTTTGTGTCATTCACTGTTAATTGTTAAATGGTTTTGCATATTTCAAATGAGCTTTCTTTATTAAAGTTATTGTGATTGAGAAGACGCAAAGAGATTGATTTTACTATTATACGGAGTAGCCACCATTATCGAATCCGTGTGTAGAAGCTGCTGGGAGAATGTTATGAATATGAACATAGGAATATGACTGGCTGCTTAGTGCCTTACTGAGGTGATGCTGGAGTTGAGAAATAGGCAAGTTGTTCTAGCTTCTGGAGTTTAAGAATACAGAAAGGATGGGTTATGCACAACTATACAGAACCTGCCAATCAACAGACTAAGTAGTCATTCGATTCAATACACTACAAGTCTACAACTTACGGAGAACAATTTATGAGACAGCAGGTACACAGCAGCTGTAAATAGATAATAATACTATAGTGCATTCATTAGCCATCTCGGTAACACCAGTGATGCTTTCATCCCAAGCCTACTCAAGAACAAGGCATATAGGATGTGCAGAAGAAATACGAAGAAGCAACAGTTTAACAATAGCTGCCAGAAAAGAAGGTTGTAAGCTTGACTTATACGTAATAGATAAATTGAAAATACAAATGGTTTTTTTTTGTTTGATGTTTGGTTGGATCTAGAAGTCTTACCAGAGTACCAAATATAGCATATATCGTATTCATTGATGGAACTGTATTTAATCCTAATGAGTTGAATATCAAGGTGAGGGTAGCATGTACATTGACGGTGATCTGCAACAAAAGAATAACGCTGTAAGGTGCAATCTTGTGTCCGACCACATGAAATATACAAGTTATATACAAAAGGATTCAATTAATTACCAAAGCAAGTATGTTTTCCCTTATCAAGAACGAGGATGTTAGAACATATCCTAACGCTCCTATTGCTCGAACCTGCATCAAAAAAAAAAAAGAAAAAAAGTTGCCCTCGCTATGCAACAACTGAAAGTAGCTTAACAAAATCTGAAGCAATTGACCTTTTTAGGCAAAGGTGGAAAGAACTATACCAATGTGCACAAGAAGATCG

Coding sequence (CDS)

ATGTCAATGGAGCCAAAATCTCTCTCCTCCTGGGATTACCTAATTCTCCTCTTCGTACGCCCTTCTCTCGCCCTTCTCTTTGTTCTTTTCGTCCTCCTCTTAGGTTGGTGGATGGCGTGGAAATTGGTGTTAGTTCATGTTCCTTTGGTACAAGAAATCTTTGGGTTGCGTAAAAAAACAACCAAACCCAAGATTCCAGAGCGTCGCTTCTCTCAATTCTACAACTCCCGTCAAACAAGTAAAAGTCAACATTAG

Protein sequence

MSMEPKSLSSWDYLILLFVRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKTTKPKIPERRFSQFYNSRQTSKSQH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo17908	Spo17908	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo17908.1	Spo17908.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17908.1.utr5p.1	Spo17908.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17908.1.CDS.2	Spo17908.1.CDS.2	CDS
Spo17908.1.CDS.1	Spo17908.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17908.1.utr3p.3	Spo17908.1.utr3p.3	three_prime_UTR
Spo17908.1.utr3p.2	Spo17908.1.utr3p.2	three_prime_UTR
Spo17908.1.utr3p.1	Spo17908.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17908.1.exon.4	Spo17908.1.exon.4	exon
Spo17908.1.exon.3	Spo17908.1.exon.3	exon
Spo17908.1.exon.2	Spo17908.1.exon.2	exon
Spo17908.1.exon.1	Spo17908.1.exon.1	exon

Homology

[Close]

BLAST of Spo17908.1 vs. NCBI nr
Match: gi|902223388|gb|KNA19427.1| (hypothetical protein SOVF_061590 [Spinacia oleracea])

HSP 1 Score: 161.4 bits (407), Expect = 6.900e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1


		  
Query: 1  MSMEPKSLSSWDYLILLFVRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKT 60
          MSMEPKSLSSWDYLILLFVRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKT
Sbjct: 1  MSMEPKSLSSWDYLILLFVRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKT 60

Query: 61 TKPKIPERRFSQFYNSRQTSKSQH 85
          TKPKIPERRFSQFYNSRQTSKSQH
Sbjct: 61 TKPKIPERRFSQFYNSRQTSKSQH 84

[Close]

BLAST of Spo17908.1 vs. NCBI nr
Match: gi|870752263|gb|KMS64706.1| (hypothetical protein BVRB_017520 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 109.8 bits (273), Expect = 2.400e-21
Identity = 58/78 (74.36%), Postives = 64/78 (82.05%), Query Frame = 1


		  
Query: 3  MEPKSLSSWDYLILLFVRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKTTK 62
          ME  SLSSWDYL+L  +RP  ALLFVLF+LLLGW++AWKLVLVHVPLVQEIFGLRKK  K
Sbjct: 1  MESSSLSSWDYLLLFLLRPLCALLFVLFILLLGWFLAWKLVLVHVPLVQEIFGLRKKPAK 60

Query: 63 PKIPERRFSQFYNSRQTS 81
             P+RRFSQFYNS   S
Sbjct: 61 ADPPKRRFSQFYNSLDAS 78

[Close]

BLAST of Spo17908.1 vs. NCBI nr
Match: gi|870869288|gb|KMT20033.1| (hypothetical protein BVRB_1g000520 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 98.6 bits (244), Expect = 5.500e-18
Identity = 53/74 (71.62%), Postives = 58/74 (78.38%), Query Frame = 1


		  
Query: 7  SLSSWDYLILLFVRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKTTKPKIP 66
          SLSSWDYL L F+RP  AL FV  VLL+GWW+AWKLVLV VPLVQEIFGLRKK  K + P
Sbjct: 13 SLSSWDYLHLFFLRPLFALFFVFLVLLMGWWLAWKLVLVDVPLVQEIFGLRKKPAKAEPP 72

Query: 67 ERRFSQFYNSRQTS 81
          +R FSQFYNS   S
Sbjct: 73 KRVFSQFYNSLAAS 86

[Close]

BLAST of Spo17908.1 vs. NCBI nr
Match: gi|1021026437|gb|KZM84224.1| (hypothetical protein DCAR_028229 [Daucus carota subsp. sativus])

HSP 1 Score: 96.7 bits (239), Expect = 2.100e-17
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 1


		  
Query: 1  MSMEPKSLSSWDYLILLFVRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKT 60
          M+    S S+WDY+ L F+RP LA+LFV  +LLLGW++AWKLVLVHVPLVQEIFGLRKK+
Sbjct: 1  MAAAASSASNWDYINLFFLRPILAILFVFSLLLLGWYLAWKLVLVHVPLVQEIFGLRKKS 60

Query: 61 TKPKIP-ERRFSQFYNS 77
            PK P  RRFS+FYNS
Sbjct: 61 FTPKPPSRRRFSKFYNS 77

[Close]

BLAST of Spo17908.1 vs. NCBI nr
Match: gi|703147430|ref|XP_010109049.1| (hypothetical protein L484_007383 [Morus notabilis])

HSP 1 Score: 96.3 bits (238), Expect = 2.700e-17
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 1


		  
Query: 2  SMEPKSLSSWDYLILLFVRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKTT 61
          S    +LS WDYL LL +RP+LA+ FVLF++ LGW  AWKLVLVHVPLVQEIFGLRKK  
Sbjct: 5  SFSELALSRWDYLNLLVLRPALAIAFVLFLIFLGWLSAWKLVLVHVPLVQEIFGLRKKNA 64

Query: 62 KPKIPERRFSQFYNS 77
          KPK P RR S+ YN+
Sbjct: 65 KPKPPSRRLSKIYNT 79

[Close]

BLAST of Spo17908.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKQ1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_061590 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 4.800e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1


		  
Query: 1  MSMEPKSLSSWDYLILLFVRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKT 60
          MSMEPKSLSSWDYLILLFVRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKT
Sbjct: 1  MSMEPKSLSSWDYLILLFVRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKT 60

Query: 61 TKPKIPERRFSQFYNSRQTSKSQH 85
          TKPKIPERRFSQFYNSRQTSKSQH
Sbjct: 61 TKPKIPERRFSQFYNSRQTSKSQH 84

[Close]

BLAST of Spo17908.1 vs. UniProtKB/TrEMBL
Match: A0A0J7YM61_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_017520 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.700e-21
Identity = 58/78 (74.36%), Postives = 64/78 (82.05%), Query Frame = 1


		  
Query: 3  MEPKSLSSWDYLILLFVRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKTTK 62
          ME  SLSSWDYL+L  +RP  ALLFVLF+LLLGW++AWKLVLVHVPLVQEIFGLRKK  K
Sbjct: 1  MESSSLSSWDYLLLFLLRPLCALLFVLFILLLGWFLAWKLVLVHVPLVQEIFGLRKKPAK 60

Query: 63 PKIPERRFSQFYNSRQTS 81
             P+RRFSQFYNS   S
Sbjct: 61 ADPPKRRFSQFYNSLDAS 78

[Close]

BLAST of Spo17908.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D764_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g000520 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.800e-18
Identity = 53/74 (71.62%), Postives = 58/74 (78.38%), Query Frame = 1


		  
Query: 7  SLSSWDYLILLFVRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKTTKPKIP 66
          SLSSWDYL L F+RP  AL FV  VLL+GWW+AWKLVLV VPLVQEIFGLRKK  K + P
Sbjct: 13 SLSSWDYLHLFFLRPLFALFFVFLVLLMGWWLAWKLVLVDVPLVQEIFGLRKKPAKAEPP 72

Query: 67 ERRFSQFYNSRQTS 81
          +R FSQFYNS   S
Sbjct: 73 KRVFSQFYNSLAAS 86

[Close]

BLAST of Spo17908.1 vs. UniProtKB/TrEMBL
Match: W9S1C6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007383 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.900e-17
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 1


		  
Query: 2  SMEPKSLSSWDYLILLFVRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKTT 61
          S    +LS WDYL LL +RP+LA+ FVLF++ LGW  AWKLVLVHVPLVQEIFGLRKK  
Sbjct: 5  SFSELALSRWDYLNLLVLRPALAIAFVLFLIFLGWLSAWKLVLVHVPLVQEIFGLRKKNA 64

Query: 62 KPKIPERRFSQFYNS 77
          KPK P RR S+ YN+
Sbjct: 65 KPKPPSRRLSKIYNT 79

[Close]

BLAST of Spo17908.1 vs. UniProtKB/TrEMBL
Match: A0A061FHH4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_035000 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.200e-16
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 1


		  
Query: 8  LSSWDYLILLFVRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKTTKPKIPE 67
          LS W+YL LL VRP +A+ FVL  + L WW+AWKLVLVHVPLVQEIFGLRKK  KPK P 
Sbjct: 13 LSFWNYLNLLLVRPIIAIFFVLSFIFLWWWLAWKLVLVHVPLVQEIFGLRKKPVKPKPPT 72

Query: 68 RRFSQFYNS--RQTSKSQ 84
          RR S++YNS   Q+S SQ
Sbjct: 73 RRLSRYYNSINAQSSSSQ 90

[Close]

BLAST of Spo17908.1 vs. TAIR (Arabidopsis)
Match: AT1G36380.1 (unknown protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.200e-10
Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = 1


		  
Query: 7  SLSSWDYLILLF-VRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKTTKPKI 66
          S S  D L   F +RP LA+ FV+  + L W++AWKLVL HVPLVQEIFGLRKKT  PK 
Sbjct: 4  SPSFLDNLFFFFLIRPLLAISFVICFIALWWFLAWKLVLSHVPLVQEIFGLRKKTFIPKP 63

Query: 67 PER-RFSQFYNS 77
            R R ++FY S
Sbjct: 64 ESRGRIAKFYKS 75

The following BLAST results are available for this feature:

BLAST of Spo17908.1 vs. NCBI nr
BLAST of Spo17908.1 vs. UniProtKB/TrEMBL
BLAST of Spo17908.1 vs. ExPASy Swiss-Prot
BLAST of Spo17908.1 vs. TAIR (Arabidopsis)

BLAST of Spo17908.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902223388\|gb\|KNA19427.1\|	6.9e-37	100.	hypothetical protein SOVF_0615...	[more]
gi\|870752263\|gb\|KMS64706.1\|	2.4e-21	74.3	hypothetical protein BVRB_0175...	[more]
gi\|870869288\|gb\|KMT20033.1\|	5.5e-18	71.6	hypothetical protein BVRB_1g00...	[more]
gi\|1021026437\|gb\|KZM84224.1\|	2.1e-17	67.5	hypothetical protein DCAR_0282...	[more]
gi\|703147430\|ref\|XP_010109049.1\|	2.7e-17	66.6	hypothetical protein L484_0073...	[more]

BLAST of Spo17908.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RKQ1_SPIOL	4.8e-37	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J7YM61_BETVU	1.7e-21	74.3	Uncharacterized protein OS=Bet...	[more]
A0A0J8D764_BETVU	3.8e-18	71.6	Uncharacterized protein OS=Bet...	[more]
W9S1C6_9ROSA	1.9e-17	66.6	Uncharacterized protein OS=Mor...	[more]
A0A061FHH4_THECC	1.2e-16	66.6	Uncharacterized protein isofor...	[more]

BLAST of Spo17908.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo17908.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G36380.1	1.2e-10	56.9	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37192	FAMILY NOT NAMED	coord: 1..76 score: 6.5