Spo17911.1 (mRNA) | SpinachBase

Overview


Name	Spo17911.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Transmembrane protein, putative
Location	chr1 : 13433283 .. 13434583 (+)
Sequence length	1134

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGCATTTTAGCCATTGAAGAGAGAGAGAGAGAGAATGGAAAACATCACAGCAAGTGAAATAGCAGGTCTTGGTGTAGGCACCTTCCTCCTTTGTGCCACCATTGCCGCCCCTAAAGTTGATTCCTTTATCTCCTCTTCCCAAAGAAGGTACACTTCTAATTTTGATTTGTTAAATTATCATCTCCTTTTGTCCGAATTAATAGTCGCCTTAATAGTGTAATTTGGTAATAGCTGAACAGGGAAGGATGAAGTACTTTTTTTATGTCTCTGTTTTAGCGAGATTAATATTGAGTCGTTGTTGTTTTAATTTGCAGTTCATTGAAAATGTGCAACCGATGTGGGGATGTAAAACTGATAGCTTGCAAAAAATGTAAAGGATCCGGGGCAGTTAAACCGGGTGGTTTATTTGGATTGAGTAATCCAATGGAAGATTTATTTCCGGGTCGATTCGAATCGAATAAGGGTTCCATTTCTTGTGTTAATTGTGGAGCTAAGGGTCATTTTCCCTGCCCTCAATGTTACCAAAGTTCGTCCTCATCTTCTGAGCAGTAATAAGATGACGTACAATTGCAATTGCAATTGCAATTGATACTAATGTAAATGTTAATAGTTGGCAAAGATATTACTCCAATGTTTGTACCTTCATTTGAGTTAGAAGATGTTTTTTACCTTTTTTTATACACTATTGCCCGTACAAGTATGTTTTTAGATGGGAAAATGTAGCAACTGGACACTTCAACTTGTGTGAGACGTGCAATTTAATGACATCGTGTAAGATTAATGTCTTTATTTTGACTTAGTTTTTATGAAACTAGCTTCTGAGCCCGTTTAATGAACGGGTAATTATATAGTGGTTGTTAAACGGTCTTTTAAAATGCTAATTTTGGTGAGGTATTGTGATTTTAGTGGGTTGGAAATTGAAAAAATATACATATTAGATGGTGGATTAAATATCGAGTGTTAAAGAGGGAGATGGAGTGAAAGAAGTTATATGAATTAAATGTTGAATTGATTTTGAGGAAGATGAATTGGGGTGTTACAGCTGTAAAATAACTTGGAAAACAAACCACAAAAGAAAAAATTGAAAAAAAACAAAGTAATGGAGGAAAAATGGAATGACACATGTCATCTGATAATCAATGGTCTTCCTTTTTAAATACTAGGTATTGATAATGCAAATGCGAAATGCTTCTATGCCACGACATGCGTTTGAACAATATTTTTTGACTCCAAACTTCATAAAAGTTAACTAGAAAACTTAAATTATGTTGACCGGTCTAATTAAAAGTTATAGGGGTG

mRNA sequence

TTAGCATTTTAGCCATTGAAGAGAGAGAGAGAGAGAATGGAAAACATCACAGCAAGTGAAATAGCAGGTCTTGGTGTAGGCACCTTCCTCCTTTGTGCCACCATTGCCGCCCCTAAAGTTGATTCCTTTATCTCCTCTTCCCAAAGAAGTTCATTGAAAATGTGCAACCGATGTGGGGATGTAAAACTGATAGCTTGCAAAAAATGTAAAGGATCCGGGGCAGTTAAACCGGGTGGTTTATTTGGATTGAGTAATCCAATGGAAGATTTATTTCCGGGTCGATTCGAATCGAATAAGGGTTCCATTTCTTGTGTTAATTGTGGAGCTAAGGGTCATTTTCCCTGCCCTCAATGTTACCAAAGTTCGTCCTCATCTTCTGAGCAGTAATAAGATGACGTACAATTGCAATTGCAATTGCAATTGATACTAATGTAAATGTTAATAGTTGGCAAAGATATTACTCCAATGTTTGTACCTTCATTTGAGTTAGAAGATGTTTTTTACCTTTTTTTATACACTATTGCCCGTACAAGTATGTTTTTAGATGGGAAAATGTAGCAACTGGACACTTCAACTTGTGTGAGACGTGCAATTTAATGACATCGTGTAAGATTAATGTCTTTATTTTGACTTAGTTTTTATGAAACTAGCTTCTGAGCCCGTTTAATGAACGGGTAATTATATAGTGGTTGTTAAACGGTCTTTTAAAATGCTAATTTTGGTGAGGTATTGTGATTTTAGTGGGTTGGAAATTGAAAAAATATACATATTAGATGGTGGATTAAATATCGAGTGTTAAAGAGGGAGATGGAGTGAAAGAAGTTATATGAATTAAATGTTGAATTGATTTTGAGGAAGATGAATTGGGGTGTTACAGCTGTAAAATAACTTGGAAAACAAACCACAAAAGAAAAAATTGAAAAAAAACAAAGTAATGGAGGAAAAATGGAATGACACATGTCATCTGATAATCAATGGTCTTCCTTTTTAAATACTAGGTATTGATAATGCAAATGCGAAATGCTTCTATGCCACGACATGCGTTTGAACAATATTTTTTGACTCCAAACTTCATAAAAGTTAACTAGAAAACTTAAATTATGTTGACCGGTCTAATTAAAAGTTATAGGGGTG

Coding sequence (CDS)

ATGGAAAACATCACAGCAAGTGAAATAGCAGGTCTTGGTGTAGGCACCTTCCTCCTTTGTGCCACCATTGCCGCCCCTAAAGTTGATTCCTTTATCTCCTCTTCCCAAAGAAGTTCATTGAAAATGTGCAACCGATGTGGGGATGTAAAACTGATAGCTTGCAAAAAATGTAAAGGATCCGGGGCAGTTAAACCGGGTGGTTTATTTGGATTGAGTAATCCAATGGAAGATTTATTTCCGGGTCGATTCGAATCGAATAAGGGTTCCATTTCTTGTGTTAATTGTGGAGCTAAGGGTCATTTTCCCTGCCCTCAATGTTACCAAAGTTCGTCCTCATCTTCTGAGCAGTAA

Protein sequence

MENITASEIAGLGVGTFLLCATIAAPKVDSFISSSQRSSLKMCNRCGDVKLIACKKCKGSGAVKPGGLFGLSNPMEDLFPGRFESNKGSISCVNCGAKGHFPCPQCYQSSSSSSEQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo17911	Spo17911	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo17911.1	Spo17911.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17911.1.exon.1	Spo17911.1.exon.1	exon
Spo17911.1.exon.2	Spo17911.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17911.1.utr5p.1	Spo17911.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17911.1.CDS.1	Spo17911.1.CDS.1	CDS
Spo17911.1.CDS.2	Spo17911.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17911.1.utr3p.1	Spo17911.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo17911.1 vs. NCBI nr
Match: gi|902190149|gb|KNA11543.1| (hypothetical protein SOVF_133990 [Spinacia oleracea])

HSP 1 Score: 237.3 bits (604), Expect = 1.400e-59
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 1


		  
Query: 1   MENITASEIAGLGVGTFLLCATIAAPKVDSFISSSQRSSLKMCNRCGDVKLIACKKCKGS 60
           MENITASEIAGLGVGTFLLCATIAAPKVDSFISSSQRSSLKMCNRCGDVKLIACKKCKGS
Sbjct: 1   MENITASEIAGLGVGTFLLCATIAAPKVDSFISSSQRSSLKMCNRCGDVKLIACKKCKGS 60

Query: 61  GAVKPGGLFGLSNPMEDLFPGRFESNKGSISCVNCGAKGHFPCPQCYQSSSSSSEQ 117
           GAVKPGGLFGLSNPMEDLFPGRFESN+GSISCVNCGAKGHFPCPQCYQSSSSSSEQ
Sbjct: 61  GAVKPGGLFGLSNPMEDLFPGRFESNEGSISCVNCGAKGHFPCPQCYQSSSSSSEQ 116

[Close]

BLAST of Spo17911.1 vs. NCBI nr
Match: gi|731349940|ref|XP_010686254.1| (PREDICTED: uncharacterized protein LOC104900525 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 203.4 bits (516), Expect = 2.200e-49
Identity = 94/115 (81.74%), Postives = 106/115 (92.17%), Query Frame = 1


		  
Query: 1   MENITASEIAGLGVGTFLLCATIAAPKVDSFISSSQRSSLKMCNRCGDVKLIACKKCKGS 60
           M+NITASEIAGLGVGTFLLCATIAAPKVDSFISS+QRSSL MC RCGDVKL+ C KCKGS
Sbjct: 1   MDNITASEIAGLGVGTFLLCATIAAPKVDSFISSTQRSSLGMCKRCGDVKLVVCNKCKGS 60

Query: 61  GAVKPGGLFGLSNPMEDLFPGRFESNKGSISCVNCGAKGHFPCPQCYQSSSSSSE 116
           G++KPGGLFG +NPM++L PGRFESN+  ISCVNC AKGHFPCPQCYQ+S+SS+E
Sbjct: 61  GSIKPGGLFGFTNPMDELLPGRFESNEKPISCVNCKAKGHFPCPQCYQTSTSSAE 115

[Close]

BLAST of Spo17911.1 vs. NCBI nr
Match: gi|645248417|ref|XP_008230288.1| (PREDICTED: uncharacterized protein LOC103329576 [Prunus mume])

HSP 1 Score: 143.3 bits (360), Expect = 2.700e-31
Identity = 69/112 (61.61%), Postives = 87/112 (77.68%), Query Frame = 1


		  
Query: 1   MENITASEIAGLGVGTFLLCATIAAPKVDSFISSSQRSSLKMCNRCGDVKLIACKKCKGS 60
           M+NITASE+AG GVG  LLCATIAAPKVD+FIS+SQRSSL MC RCG++++IAC +CKG 
Sbjct: 1   MDNITASELAGFGVGALLLCATIAAPKVDAFISASQRSSLGMCKRCGNLRMIACSRCKGV 60

Query: 61  GAVKPGGLFGLSNPMEDLFP--GRFESNKGSISCVNCGAKGHFPCPQCYQSS 111
           G +K GG+FGL N ++D +   G  +S   SISC NC A+GHF CP C ++S
Sbjct: 61  GLIKEGGVFGL-NLIDDFYESVGGSDSKVRSISCTNCNARGHFSCPDCSKTS 111

[Close]

BLAST of Spo17911.1 vs. NCBI nr
Match: gi|976925147|gb|KVI09060.1| (hypothetical protein Ccrd_012557 [Cynara cardunculus var. scolymus])

HSP 1 Score: 142.9 bits (359), Expect = 3.500e-31
Identity = 68/106 (64.15%), Postives = 82/106 (77.36%), Query Frame = 1


		  
Query: 1   MENITASEIAGLGVGTFLLCATIAAPKVDSFISSSQRSSLKMCNRCGDVKLIACKKCKGS 60
           +E+ITASE+AG GVG  LLCAT++APK+DSFIS+SQRSSL MC RCGD+KLIAC  CKGS
Sbjct: 2   LEHITASEVAGYGVGALLLCATVSAPKIDSFISASQRSSLGMCKRCGDLKLIACSNCKGS 61

Query: 61  GAVKPGGLFGLSNPMEDLFPGRFESNKGSISCVNCGAKGHFPCPQC 107
           G++K GG+F  S P +  F G  ES   S+SC  C A+GHFPCP C
Sbjct: 62  GSLKQGGMFSFSLPDDVSFVG--ESKTISLSCNKCRARGHFPCPDC 105

[Close]

BLAST of Spo17911.1 vs. NCBI nr
Match: gi|595957289|ref|XP_007216705.1| (hypothetical protein PRUPE_ppa026503mg [Prunus persica])

HSP 1 Score: 142.5 bits (358), Expect = 4.600e-31
Identity = 69/112 (61.61%), Postives = 86/112 (76.79%), Query Frame = 1


		  
Query: 1   MENITASEIAGLGVGTFLLCATIAAPKVDSFISSSQRSSLKMCNRCGDVKLIACKKCKGS 60
           M NITASE+AG GVG  LLCATIAAPKVD+FIS+SQRSSL MC RCG++++IAC +CKG 
Sbjct: 1   MNNITASELAGFGVGALLLCATIAAPKVDAFISASQRSSLGMCKRCGNLRMIACSRCKGV 60

Query: 61  GAVKPGGLFGLSNPMEDLFP--GRFESNKGSISCVNCGAKGHFPCPQCYQSS 111
           G +K GG+FGL N ++D +   G  +S   SISC NC A+GHF CP C ++S
Sbjct: 61  GLIKEGGVFGL-NLIDDFYESVGGSDSKVRSISCTNCNARGHFSCPDCSKTS 111

[Close]

BLAST of Spo17911.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXV8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_133990 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 9.600e-60
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 1


		  
Query: 1   MENITASEIAGLGVGTFLLCATIAAPKVDSFISSSQRSSLKMCNRCGDVKLIACKKCKGS 60
           MENITASEIAGLGVGTFLLCATIAAPKVDSFISSSQRSSLKMCNRCGDVKLIACKKCKGS
Sbjct: 1   MENITASEIAGLGVGTFLLCATIAAPKVDSFISSSQRSSLKMCNRCGDVKLIACKKCKGS 60

Query: 61  GAVKPGGLFGLSNPMEDLFPGRFESNKGSISCVNCGAKGHFPCPQCYQSSSSSSEQ 117
           GAVKPGGLFGLSNPMEDLFPGRFESN+GSISCVNCGAKGHFPCPQCYQSSSSSSEQ
Sbjct: 61  GAVKPGGLFGLSNPMEDLFPGRFESNEGSISCVNCGAKGHFPCPQCYQSSSSSSEQ 116

[Close]

BLAST of Spo17911.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EN94_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g181320 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.500e-49
Identity = 94/115 (81.74%), Postives = 106/115 (92.17%), Query Frame = 1


		  
Query: 1   MENITASEIAGLGVGTFLLCATIAAPKVDSFISSSQRSSLKMCNRCGDVKLIACKKCKGS 60
           M+NITASEIAGLGVGTFLLCATIAAPKVDSFISS+QRSSL MC RCGDVKL+ C KCKGS
Sbjct: 1   MDNITASEIAGLGVGTFLLCATIAAPKVDSFISSTQRSSLGMCKRCGDVKLVVCNKCKGS 60

Query: 61  GAVKPGGLFGLSNPMEDLFPGRFESNKGSISCVNCGAKGHFPCPQCYQSSSSSSE 116
           G++KPGGLFG +NPM++L PGRFESN+  ISCVNC AKGHFPCPQCYQ+S+SS+E
Sbjct: 61  GSIKPGGLFGFTNPMDELLPGRFESNEKPISCVNCKAKGHFPCPQCYQTSTSSAE 115

[Close]

BLAST of Spo17911.1 vs. UniProtKB/TrEMBL
Match: A0A118K5H3_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012557 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.500e-31
Identity = 68/106 (64.15%), Postives = 82/106 (77.36%), Query Frame = 1


		  
Query: 1   MENITASEIAGLGVGTFLLCATIAAPKVDSFISSSQRSSLKMCNRCGDVKLIACKKCKGS 60
           +E+ITASE+AG GVG  LLCAT++APK+DSFIS+SQRSSL MC RCGD+KLIAC  CKGS
Sbjct: 2   LEHITASEVAGYGVGALLLCATVSAPKIDSFISASQRSSLGMCKRCGDLKLIACSNCKGS 61

Query: 61  GAVKPGGLFGLSNPMEDLFPGRFESNKGSISCVNCGAKGHFPCPQC 107
           G++K GG+F  S P +  F G  ES   S+SC  C A+GHFPCP C
Sbjct: 62  GSLKQGGMFSFSLPDDVSFVG--ESKTISLSCNKCRARGHFPCPDC 105

[Close]

BLAST of Spo17911.1 vs. UniProtKB/TrEMBL
Match: M5WW56_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026503mg PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.200e-31
Identity = 69/112 (61.61%), Postives = 86/112 (76.79%), Query Frame = 1


		  
Query: 1   MENITASEIAGLGVGTFLLCATIAAPKVDSFISSSQRSSLKMCNRCGDVKLIACKKCKGS 60
           M NITASE+AG GVG  LLCATIAAPKVD+FIS+SQRSSL MC RCG++++IAC +CKG 
Sbjct: 1   MNNITASELAGFGVGALLLCATIAAPKVDAFISASQRSSLGMCKRCGNLRMIACSRCKGV 60

Query: 61  GAVKPGGLFGLSNPMEDLFP--GRFESNKGSISCVNCGAKGHFPCPQCYQSS 111
           G +K GG+FGL N ++D +   G  +S   SISC NC A+GHF CP C ++S
Sbjct: 61  GLIKEGGVFGL-NLIDDFYESVGGSDSKVRSISCTNCNARGHFSCPDCSKTS 111

[Close]

BLAST of Spo17911.1 vs. UniProtKB/TrEMBL
Match: W9R9J9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018172 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.200e-31
Identity = 69/110 (62.73%), Postives = 85/110 (77.27%), Query Frame = 1


		  
Query: 1   MENITASEIAGLGVGTFLLCATIAAPKVDSFISSSQRSSLKMCNRCGDVKLIACKKCKGS 60
           MENITASE+AG GVGTFLLCATIAAP+VD+FIS+SQRSSL MC RCG++++IAC KCKG+
Sbjct: 1   MENITASEVAGFGVGTFLLCATIAAPRVDAFISASQRSSLGMCKRCGNLRMIACTKCKGA 60

Query: 61  GAVKPGGLFGLSNPMEDLFPGRFESNKGSISCVNCGAKGHFPCPQCYQSS 111
           G ++ G LFGL N ++D       S + S SC NC  +GHF CP+C  SS
Sbjct: 61  GLIRQGSLFGL-NLLDD-------SKRRSTSCTNCQGRGHFSCPECSNSS 102

[Close]

BLAST of Spo17911.1 vs. TAIR (Arabidopsis)
Match: AT5G15802.1 (unknown protein)

HSP 1 Score: 124.0 bits (310), Expect = 6.000e-29
Identity = 59/109 (54.13%), Postives = 79/109 (72.48%), Query Frame = 1


		  
Query: 1   MENITASEIAGLGVGTFLLCATIAAPKVDSFISSSQRSSLKMCNRCGDVKLIACKKCKGS 60
           M+++T++E+AGL VG  LL ATIAAPKVD+FI++SQR SL MC +CGD+K +AC +CKG+
Sbjct: 1   MQSLTSNEVAGLAVGALLLGATIAAPKVDAFIAASQRRSLGMCRKCGDLKNVACGRCKGT 60

Query: 61  GAVKPGGLFGLSNPMEDLFPGRFESNKGSISCVNCGAKGHFPCPQCYQS 110
           G +K GG FG S+           SN  S++C NC AKG FPCP+C +S
Sbjct: 61  GTIKSGGFFGFSD----------SSNTRSVACDNCQAKGCFPCPECSKS 99

The following BLAST results are available for this feature:

BLAST of Spo17911.1 vs. NCBI nr
BLAST of Spo17911.1 vs. UniProtKB/TrEMBL
BLAST of Spo17911.1 vs. ExPASy Swiss-Prot
BLAST of Spo17911.1 vs. TAIR (Arabidopsis)

BLAST of Spo17911.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902190149\|gb\|KNA11543.1\|	1.4e-59	99.1	hypothetical protein SOVF_1339...	[more]
gi\|731349940\|ref\|XP_010686254.1\|	2.2e-49	81.7	PREDICTED: uncharacterized pro...	[more]
gi\|645248417\|ref\|XP_008230288.1\|	2.7e-31	61.6	PREDICTED: uncharacterized pro...	[more]
gi\|976925147\|gb\|KVI09060.1\|	3.5e-31	64.1	hypothetical protein Ccrd_0125...	[more]
gi\|595957289\|ref\|XP_007216705.1\|	4.6e-31	61.6	hypothetical protein PRUPE_ppa...	[more]

BLAST of Spo17911.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QXV8_SPIOL	9.6e-60	99.1	Uncharacterized protein OS=Spi...	[more]
A0A0J8EN94_BETVU	1.5e-49	81.7	Uncharacterized protein OS=Bet...	[more]
A0A118K5H3_CYNCS	2.5e-31	64.1	Uncharacterized protein OS=Cyn...	[more]
M5WW56_PRUPE	3.2e-31	61.6	Uncharacterized protein OS=Pru...	[more]
W9R9J9_9ROSA	4.2e-31	62.7	Uncharacterized protein OS=Mor...	[more]

BLAST of Spo17911.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo17911.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G15802.1	6.0e-29	54.1	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37760	FAMILY NOT NAMED	coord: 2..115 score: 2.9

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding