Spo17989.1 (mRNA)

Overview
NameSpo17989.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_101 : 910838 .. 916735 (-)
Sequence length726
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAAAACCGCTGAAAAGACGCTCAAGCAAGAGATTAAGCACGATATGCTTATGGTGCGTAAGGGCAAGAACTTCAAGAAATCGAGCAAGAATAAGGGCAAGAAGGGTAAGGGCAAGGCTACGCCCTCATCCAAGTCCAACGGCACCAGTTCTGGTAAACAGAAAAGGGTGACTCGTTCTCCTGTCGACTTTGAATGCTTCTACTGCAGGAAGAAGGGGCATTGGAAGAGGGATTGCTTGAAGAAGAAGGAAGATGAGAAGAACGGGAACGTTGCTTCTACTTCAGGTATATATATGTTATACATTGTAATCTTGCTAATTCTACTTCTTGGGTATTAGATACTGGTTGTGGCTCACACTTATGTTCCAATTCGCAGGGACTAAGGAGAAGTAGAAAGCTTGATAAAGGCGAGATGGATCTACGCGTGGGAAATGGAGCACGGATTGCTGCATTAGCCGTAGGATCTTATTTTATTTCTTTGCCTAGTGGGTTTGTTTTGGAACTAGAAAACTGTTACTATGTTCCTAGTATCACCAGAAACATCATTTCCGTTTAAAGTTTGGATTCTAAAGGTTTTAGTTTTCAATTTAAAGACAATAGTTGTTCTTTTCCTTTGAATGGAATGTTTTATGGTTCAGCACAACAAGAAAACAGTCTTTATGTGCTAGATACGAGCAAACACATTTATAACATAAATACCAAAAAGTCTAAAACTGGTGATTCGGATCTCACATTTCTGTGGCATTGTCGATTAGGCCATATAAACATAAAGCGCATGGAATTACTTCAACGGAAATGAATTCTAGAATCATTCGACTTAGAGAAGATTGATCAATGCGAATCTTGTTTACTTGGCAAAATGACAAAGAAACCTTTCTCAAAGGTGGGAGAAAGAGCAAGCGAACTACTAGGGCTAATACATACGGACGTATGTGGGCCTATCACTAGAGGAAAAATCGTCATGTGCTTCCCTTCAAGTGCGGCTCATTTAGTGAATTGGCAGCACTTGAGAGCATGAAAAATAAAAGAAAAAATACATTTTCACAAGTGCGGGCTAATTTTACAAAAGCCACACATAATATTTCTAAATTATTGCAAAAAAAGGAAAATATTTCTAAAATCAGAGAATCTCTCTCCTCGATTCTTCTCCCTCTTCCTCTTCAGCTTCAGCTTCGTTTTCTCTCTCCTCTGTCGTCGCCGTCGCTTCTTCACCGCCGGAGATCGATATCCCCCACCTCCGTTGATCTCTACCCTCTTCCAGATCAGACTAATTCAGGTTTGTTCATCGAATTTTTTTTTTCTGGTTATTTTTGGCGATTTTTCCCTTCAATCCTCCGCCCTAATCAATTTCTTTACTCCAATTTCCTGGACATTGGAGGACCTCTCATTTTTCGTTAATTATCCATTTTTATGCAAATCTAGGGTTGATGAACTACTTGCTTGTTGCAATTTTCTTTCTCAATTGCCAGATTTACAAAATTGAAGAAGTTTATTTTTGGGGTTTTGTTCTGTTTTGTTGTTTGTTGATGTATGAATTCAAAGCTTAGACAAACCAATTAAATGATGTAAAGGACTGGACGATAAAGCATACCGCCTGACCATCCAGAGTTGAATGTAGCCTCCCTCAAACATGTACGTTGTTCAGAATTTATAAAAAGGCAGTTATATAATGGCTACAAAATGCTCAAGGTACATTTTATCAGACACACAGTTTATGATGATAAGATGATAACAGCATCAAGTATCACACAGTCAGCAGTGTGTGTCTGGTCATAACAGGGACAAACTTGCTGTAAATCACTTGTTTAGGAGGGGGAGTAGTGACGTATGTCAGTTTTAGCTTGAGTAGAAACCGGGAGGTAGATTCTGGAAATTCTAGCGGAGCTGCAAGTGGTTATAGCAGTCTAGTTTGAACTTTAGATAGTGTAATTCCAGGAAAGAGTTGGCAGAAAATGTAAGGAAAATTTCAAACTATAATCCCAACTATGGATAGTCTTCCCACAATAATCCCAAGTATGTGTTATCCCACAGAAATCAGAACTATGTGAGTTGTATTCCCAAAATAAAATCCGGTGTGACTAGTTACCTGGTTAACCAGTTAGCTGACTCCTTTTTTCCATTTTCGCTTTTGTTCTAGTTTGCTGCCAACTAAAATGTCTCGTTCTTAAATTCATTGTATTATGTTGATCAGTGGTGCTTTTGTCATGCAGTAAAAATAATCAGTAATTTTAGTTACTGGGAACATGTTGCTCTTTTCTGTTGAAAAATCTGATCTTTCTTTTTCAACTTAGGCTAGTGTTATTTCTCTATATGTTGTTTCATGTGCAGTTTGTTTAGAATTGCAGAAAAATTCACTGATTGTTCATTCACATAGCTAAGAGATTGTCTCTTGGACTCTGAAATCCAACAACATTCCTTGCAGGCCACTGTTAGCGTACAACTGTGATAACTCTTTGAAAGGCCTTATATTTATTGCCGGGTGAGTCACCAGGATTCTTTTCATCCTTGGAAGTATGCAACTTGATTGTTTAATATTATTATGTAGTTTATAACTGTATCTGAGCACTTTAAGTTTATGTATACTATATGTAACCATGTTTAATCCAGATACTTTACTTTTTTATGTCTCTTAATCAAATAATGACTGCTTATAATTATCGAATCCTATAAGGTAGTCAAAGTCTCAAGTTAAATGTCCTTTGGAAAGTTTCCGTCTTGCAGATGGCCCAACTACTGAATTGTAACATTACTAGTAGCTTAATCAAGAGTTATTCATAATTGTTGTTTATACCTGTTGGCCACTGATAGTTGCAGATGAGATTTCTTTAAATATCAACTTTGCTACTCGAATAATAAGTACCAGTACCGAATGGGAAACGTCTACTGTTTAGACTCTCTAGTTCCTTGCAGATTTTGAAGGATTACTTGTCTTTTCCTGATATGTATTTCATATAAATAGGAAGAGAATTGTAAACTAACCACTGGAGATGGAGCACATGATTTTCAAGGGAGGCCTGTGGAATTAATTTGGAGACCCTGTCTTTTTATTTGTGGTGAGTGTTGGAATGCTAGCCATTACTATTCTTGTCAGAACACTATAATCTTTAGTATTAACCGTTTAATCCTCCCCTGCCCCCCTTTCTTCTTCTATGTACATGTAATGACCATGTAAGTGAACGTCTTGCCTTCTATGGTGTCAGTACAAACCTAGTTAGTTATATATGGTGTCAATGCTCTGGGTGTTTTTGTACTTTGCATAGATTATTGCTTGATTGTACTTTGTATAGATTATTGCTTGATATTCACTAGTAGAAAAATCTTTTTGTGGCAATACTTAATATAATGATTCTCTTGCACATATGATGATATTGGAACCAATGTTGAGAACGCTCAAGCAGGCGACCCATCTGGCAAAGGCATCAAAGACTCGGCGTTCAAATTCAGCACTGGTCAGTTGTGTTTTCACCGCTGATGTTTCTTCCAGTGTTATCTTATCCAAATATTTTGGCAATAGTTAGTCATCGTGTTGGGTTTGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGAGGTTAAAAAAATGAAAGAATACGCTTTTCTGTTTGTTTTGACAGTCTTGGCTATATTCATTGTGGCTTGTGAACGAAAGTTCAACTAGGATTTGAACTAAAAATTTAGAATTTGGTTGATAACCGTGTTAACCCAACTTATAGATGTAACACGTGACTTCTTAACAGTTAACCCACCCCCTAGGGTATGACCTATAATGATCAACGAGCCTTATATATGTGCCTAACTTAACTAAAGTAGGTACAAATGAGTTTTAGAAACATTAAATAAATCTAATAAACATGTAAAGGGTTTAAAATACCCATTTAGGTTCATTAGTTGAAAGTTTGGACCGAAATAAGCCGTTTTAGTCAAAATGTAACCTATACTTATCAAACGAGTTTCATATATGCATAACTTGACTAAAGTAGGTGAGAATGAGTATTTTTTTTTAAACATATATCTAAGTATATTAAACATCTAAAGGGTTATAAATACTTATATAGGTTCATTGGTTGAAAGTTAGAACCGAAATATGTCATTTTAGTCAAAATGTGTCCTATAATGATCAAACGAGTCTTAAATGTGTATAATTTGACCAAAGTATATGAGAATGAGTATCTGAAACATAAAATTAAGTATTTTATACATAAAAAGACTTTAAAATACTCATTTAAGTTCATTAGTTGAAATTTGGGATCGAAATTAGCCATTTTAGTCAAAATTTGACCCATAATGAACTAACGAAGCTTAAATGTGCATAACTTCACCAAAATGGTGAGAATGAGTTTTTGAAACATAAAAATAAGTGTATTAAACAAGGAAAGACTTTAAAATACACATTTAAGTTCATTAGTTGAAAGTTGGGACCGAAATTAGCCATTTTAGTCAAAACGTGACCGATAATGAACTAACGAAGTTTAAATGTGCATAACTTCACCAAAATGGGTAGAATGAGTATTTGAAACATAAAACTTAAGTTTATTAAACATGGAAAGACTTTAAAATACTCATTTAAGTTCATTAGTTGAAAGTTAGGACCGAATTTAGTCATTTTAGTCAAAACGTGACCGATAATGAACTAACGATCCTTATATGTGCATAACTTCACCAAATGGGTGAGAATGAGTATTTGAAACATAAAACTAAGTGTATTAAACATGGAAATACTTTGAAATACTCATTTAAGTTCATTAGATAAAAGTTGGGACCGAAATTAGTCATTTTAGTCAAAATGTGACCGATAATGAACTAACGAGGCTTAAATGTGCATAACTTCACAAAAATGGGTGAGAATGAGTCTTTGAAACATAAAAATAAGTTTATTAAACATGGAAGGACTTTAAAATATTTATTTAAGTTCATTAGTTGAAAGTTGGGACCGAAATTAACCAATTTTATTATTATATGGTTCATTATTTCTTTATTATGAACAAATTAAGTCTTAATTTATTTTACGAATCAATATTTATAATATAACTAAAGTGTATATATATTTTTTGATGGCTGATCTTTTTAAGGTCTTCAATAATACGAGGGAGCGGCCTTTCACCTTTGAGGAGCTAGATGAAGTTCGAGAAATGTTGGCAAACTTCATTACCAGTGATTGTTTTTGATATTTTCTTGTACTGAATCTTAAATTATGGATGCTAGCTAGTGTTTCATATGATTGTAATGTAATCGACTTTCATATTTACAATTATATACTATTTATTTTAATTATCTATATAATTGGATACTTTTTGTATGACGTATGAAGGTTAATCAGTGGCGTGGTCCAATTATAATATGTAGCAGGGAAATCGTTGTATAACAAATCTAGATCAAGTGCGGCTCATTTATAGGCCAAGTGCGGCTCATTTTTATGCTTATGATGCCCATTTCTATGTCAAGTGCGGGCTCATTTTCAAATTTGGCAGCACCAAATATGTCAAGTGCGGGCTCATTTTCAATATTGGCAGCACCAAATATGTCAAGTGCGGGCTCATTTTCAAAATTGGGAGCACCAAATATATCAAGTGCGGGCTCATATTCTAAAATTGGCAGCACAAAATATGTCAAGTGCGGGCTCATTTTCCAAATTGGCAGCACTTGAAATATCAAGTGCTGCCAATATTTTGGCAGCACTTGAGAAACATCAAGTGCGGGCAGGCCATGTTCTGCACATGTAAAAGCCCGCACTAAACCCCTTAAAATGAGCCCGCACTTGAGGTTTTTTCCTCTAGTGTATGAGTACGAAAGCTAGAGGTGAGTTCAGCTATTTCATAACGTTTACAGACAACTTCAGTAGATATGGCTATATTTACTTAATGAAGCACAAGTCTGAATCGTTTGAGAAATTCAGA

mRNA sequence

ATGCTGAAAACCGCTGAAAAGACGCTCAAGCAAGAGATTAAGCACGATATGCTTATGGTGCGTAAGGGCAAGAACTTCAAGAAATCGAGCAAGAATAAGGGCAAGAAGGGTAAGGGCAAGGCTACGCCCTCATCCAAGTCCAACGGCACCAGTTCTGGTAAACAGAAAAGGGTGACTCGTTCTCCTGTCGACTTTGAATGCTTCTACTGCAGGAAGAAGGGGCATTGGAAGAGGGATTGCTTGAAGAAGAAGGAAGATGAGAAGAACGGGAACGTTGCTTCTACTTCAGAGAATCTCTCTCCTCGATTCTTCTCCCTCTTCCTCTTCAGCTTCAGCTTCGTTTTCTCTCTCCTCTGTCGTCGCCGTCGCTTCTTCACCGCCGGAGATCGATATCCCCCACCTCCGTTGATCTCTACCCTCTTCCAGATCAGACTAATTCAGTTATATAATGGCTACAAAATGCTCAAGGTACATTTTATCAGACACACAGTTTATGATGATAAGATGATAACAGCATCAAGTATCACACAGTCAGCAGTGTGTGTCTGGCCTTATATTTATTGCCGGGAAGAGAATTGTAAACTAACCACTGGAGATGGAGCACATGATTTTCAAGGGAGGCCTGTGGAATTAATTTGGAGACCCTGTCTTTTTATTTGTGAACGCTCAAGCAGGCGACCCATCTGGCAAAGGCATCAAAGACTCGGCGTTCAAATTCAGCACTGA

Coding sequence (CDS)

ATGCTGAAAACCGCTGAAAAGACGCTCAAGCAAGAGATTAAGCACGATATGCTTATGGTGCGTAAGGGCAAGAACTTCAAGAAATCGAGCAAGAATAAGGGCAAGAAGGGTAAGGGCAAGGCTACGCCCTCATCCAAGTCCAACGGCACCAGTTCTGGTAAACAGAAAAGGGTGACTCGTTCTCCTGTCGACTTTGAATGCTTCTACTGCAGGAAGAAGGGGCATTGGAAGAGGGATTGCTTGAAGAAGAAGGAAGATGAGAAGAACGGGAACGTTGCTTCTACTTCAGAGAATCTCTCTCCTCGATTCTTCTCCCTCTTCCTCTTCAGCTTCAGCTTCGTTTTCTCTCTCCTCTGTCGTCGCCGTCGCTTCTTCACCGCCGGAGATCGATATCCCCCACCTCCGTTGATCTCTACCCTCTTCCAGATCAGACTAATTCAGTTATATAATGGCTACAAAATGCTCAAGGTACATTTTATCAGACACACAGTTTATGATGATAAGATGATAACAGCATCAAGTATCACACAGTCAGCAGTGTGTGTCTGGCCTTATATTTATTGCCGGGAAGAGAATTGTAAACTAACCACTGGAGATGGAGCACATGATTTTCAAGGGAGGCCTGTGGAATTAATTTGGAGACCCTGTCTTTTTATTTGTGAACGCTCAAGCAGGCGACCCATCTGGCAAAGGCATCAAAGACTCGGCGTTCAAATTCAGCACTGA

Protein sequence

MLKTAEKTLKQEIKHDMLMVRKGKNFKKSSKNKGKKGKGKATPSSKSNGTSSGKQKRVTRSPVDFECFYCRKKGHWKRDCLKKKEDEKNGNVASTSENLSPRFFSLFLFSFSFVFSLLCRRRRFFTAGDRYPPPPLISTLFQIRLIQLYNGYKMLKVHFIRHTVYDDKMITASSITQSAVCVWPYIYCREENCKLTTGDGAHDFQGRPVELIWRPCLFICERSSRRPIWQRHQRLGVQIQH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo17989Spo17989gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo17989.1Spo17989.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17989.1.CDS.7Spo17989.1.CDS.7CDS
Spo17989.1.CDS.6Spo17989.1.CDS.6CDS
Spo17989.1.CDS.5Spo17989.1.CDS.5CDS
Spo17989.1.CDS.4Spo17989.1.CDS.4CDS
Spo17989.1.CDS.3Spo17989.1.CDS.3CDS
Spo17989.1.CDS.2Spo17989.1.CDS.2CDS
Spo17989.1.CDS.1Spo17989.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17989.1.exon.7Spo17989.1.exon.7exon
Spo17989.1.exon.6Spo17989.1.exon.6exon
Spo17989.1.exon.5Spo17989.1.exon.5exon
Spo17989.1.exon.4Spo17989.1.exon.4exon
Spo17989.1.exon.3Spo17989.1.exon.3exon
Spo17989.1.exon.2Spo17989.1.exon.2exon
Spo17989.1.exon.1Spo17989.1.exon.1exon


Homology
[Close]
BLAST of Spo17989.1 vs. NCBI nr
Match: gi|902095074|gb|KNA03392.1| (hypothetical protein SOVF_209650, partial [Spinacia oleracea])

HSP 1 Score: 70.1 bits (170), Expect = 6.000e-9
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 

		  

Query: 113 FVFSLLCRRRRFFTAGDRYPPPPLISTLFQIRLIQL 149
           FVFSLLCRRRRFFT GDR PPPPLISTLFQIRL+Q+
Sbjct: 1   FVFSLLCRRRRFFTTGDRSPPPPLISTLFQIRLLQV 36
[Close]
BLAST of Spo17989.1 vs. NCBI nr
Match: gi|731371355|ref|XP_010666016.1| (PREDICTED: uncharacterized protein LOC104883233 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 62.8 bits (151), Expect = 9.600e-7
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 1 

		  

Query: 1   MLKTAEKTLKQEIKHDMLMVRKGKNFKKSSKNKGK----KGKGKATPSSKSNGTSSGKQK 60
           MLKTAE ++K   K+ +LM++K K   K   NK +    KGKGK    +K+  T      
Sbjct: 53  MLKTAEPSIKVAPKNHVLMIQKKKGVFKKQGNKKQYPQSKGKGKQVVKTKAGAT------ 112

Query: 61  RVTRSPVDFECFYCRKKGHWKRDCLKKKEDEKNGNVASTS 97
                 +D ECF+  K GHWKR+C K  ED+KNG +ASTS
Sbjct: 113 ------LDQECFHYHKPGHWKRNCPKYLEDKKNGKIASTS 140
[Close]
BLAST of Spo17989.1 vs. NCBI nr
Match: gi|960485473|ref|XP_014757873.1| (PREDICTED: uncharacterized protein LOC106866720, partial [Brachypodium distachyon])

HSP 1 Score: 61.2 bits (147), Expect = 2.800e-6
Identity = 46/95 (48.42%), Postives = 56/95 (58.95%), Query Frame = 1 

		  

Query: 1   MLKTAEKTLKQEIKHDMLMVRKGKNFKKSSKNKG---KKGKGKATPSSKSNGTSSGKQKR 60
           MLKTAE  +K+E  H +LMV K  +FKK+   KG   K GK  ATP+ KS    SG +  
Sbjct: 369 MLKTAEVEIKKE--HQVLMVNKTTSFKKAKGKKGNFKKGGKTVATPAKKSK---SGPKP- 428

Query: 61  VTRSPVDFECFYCRKKGHWKRDCLKKKEDEKNGNV 93
                 D ECFYC+  GHWKR+C K   D+K GNV
Sbjct: 429 ------DTECFYCKGTGHWKRNCPKYLADKKAGNV 451
[Close]
BLAST of Spo17989.1 vs. NCBI nr
Match: gi|474373353|gb|EMS63983.1| (Protein phosphatase 2C 35 [Triticum urartu])

HSP 1 Score: 61.2 bits (147), Expect = 2.800e-6
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 1 

		  

Query: 1   MLKTAEKTLKQEIKHDMLMVRKGKNFKKSSKNKGKKGKGKATPSSKSNGTSSGKQKRVTR 60
           MLKTAE  +K+E  H +LMV K  +FKK       KGKGK   + K NG     Q++  +
Sbjct: 45  MLKTAEVEIKKE--HQVLMVNKTTSFKK-------KGKGKKKGNFKKNGKQVATQEKKPK 104

Query: 61  S--PVDFECFYCRKKGHWKRDCLKKKEDEKNGNV 93
                + ECFYC++ GHWKR+C K   D+K+G V
Sbjct: 105 PGPKPETECFYCKQTGHWKRNCPKYLADKKDGKV 129
[Close]
BLAST of Spo17989.1 vs. NCBI nr
Match: gi|731317601|ref|XP_010669277.1| (PREDICTED: uncharacterized protein LOC104886528 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 59.7 bits (143), Expect = 8.200e-6
Identity = 47/97 (48.45%), Postives = 56/97 (57.73%), Query Frame = 1 

		  

Query: 1   MLKTAEKTLKQEIKH-DMLMVRKGKNFKKSSKNKGKKGKGKATPSSKSNGTSSGKQKRVT 60
           ML  AE++L  E KH D+LMVRKGK FKK      KK KGK   S   N  S  K     
Sbjct: 14  MLIQAERSLPTEPKHKDVLMVRKGKQFKKKGAPM-KKNKGKVVAS---NDISKPKVTPKE 73

Query: 61  RSPVDFECFYCRKKGHWKRDCLKKKEDEKNGNVASTS 97
           +     ECF+C K GHWKR+C +  ED+K+G  ASTS
Sbjct: 74  KVAALHECFHCHKIGHWKRNCPEYLEDKKSG--ASTS 104
[Close]
BLAST of Spo17989.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7Y6_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_209650 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.200e-9
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 

		  

Query: 113 FVFSLLCRRRRFFTAGDRYPPPPLISTLFQIRLIQL 149
           FVFSLLCRRRRFFT GDR PPPPLISTLFQIRL+Q+
Sbjct: 1   FVFSLLCRRRRFFTTGDRSPPPPLISTLFQIRLLQV 36
[Close]
BLAST of Spo17989.1 vs. UniProtKB/TrEMBL
Match: M7ZL73_TRIUA (Protein phosphatase 2C 35 OS=Triticum urartu GN=TRIUR3_30638 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.000e-6
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 1 

		  

Query: 1   MLKTAEKTLKQEIKHDMLMVRKGKNFKKSSKNKGKKGKGKATPSSKSNGTSSGKQKRVTR 60
           MLKTAE  +K+E  H +LMV K  +FKK       KGKGK   + K NG     Q++  +
Sbjct: 45  MLKTAEVEIKKE--HQVLMVNKTTSFKK-------KGKGKKKGNFKKNGKQVATQEKKPK 104

Query: 61  S--PVDFECFYCRKKGHWKRDCLKKKEDEKNGNV 93
                + ECFYC++ GHWKR+C K   D+K+G V
Sbjct: 105 PGPKPETECFYCKQTGHWKRNCPKYLADKKDGKV 129
The following BLAST results are available for this feature:
BLAST of Spo17989.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902095074|gb|KNA03392.1|6.0e-988.8hypothetical protein SOVF_2096... [more]
gi|731371355|ref|XP_010666016.1|9.6e-743.0PREDICTED: uncharacterized pro... [more]
gi|960485473|ref|XP_014757873.1|2.8e-648.4PREDICTED: uncharacterized pro... [more]
gi|474373353|gb|EMS63983.1|2.8e-643.6Protein phosphatase 2C 35 [Tri... [more]
gi|731317601|ref|XP_010669277.1|8.2e-648.4PREDICTED: uncharacterized pro... [more]
back to top
BLAST of Spo17989.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9Q7Y6_SPIOL4.2e-988.8Uncharacterized protein (Fragm... [more]
M7ZL73_TRIUA2.0e-643.6Protein phosphatase 2C 35 OS=T... [more]
back to top
BLAST of Spo17989.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo17989.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 66..88
score: 1.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 66..80
score: 1.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 66..82
score: 0
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 67..80
score: 9
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 51..88
score: 1.

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding