Spo18000.1 (mRNA) | SpinachBase

Overview


Name	Spo18000.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	BnaA04g19880D protein
Location	Super_scaffold_101 : 322519 .. 322959 (+)
Sequence length	441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATACAACATGGGAGCAAAAGTTTGAAACCCTAACACACATCTTAACAAACCCAACAACAAACCCATCACTCCACTCACAATACTTCATAGCCAACCAAATTCCCTGCTACCTAAACTGGGATTACCCACCACTCCTCTGCCCCAAATACCAACACCCAACATTCAACCTAAGATGGGCTTTCTCTCTCTTCCTCAAAAGGGCCTCCAGATTAAGGGTATCTTGGAGGTCAAAGTGCCCTTATAGTCAACCCCCACCCTTAATTTTGTCCAATGGAGTTGAAGAAGCTAAATGGGATGATGAAGGGAAAAGGCTGTATTTCAGGAAAAGGGTGTTAAGGAAGAAGCTTCAGAGTGAAGTTAATCCTGTGATCCCAGTTTTAGTCCCAAATATCTTGTTGTTGTGTCTTCTATTTTGGGATCCTTTTCCTCAGTGA

mRNA sequence

ATGGAGGATACAACATGGGAGCAAAAGTTTGAAACCCTAACACACATCTTAACAAACCCAACAACAAACCCATCACTCCACTCACAATACTTCATAGCCAACCAAATTCCCTGCTACCTAAACTGGGATTACCCACCACTCCTCTGCCCCAAATACCAACACCCAACATTCAACCTAAGATGGGCTTTCTCTCTCTTCCTCAAAAGGGCCTCCAGATTAAGGGTATCTTGGAGGTCAAAGTGCCCTTATAGTCAACCCCCACCCTTAATTTTGTCCAATGGAGTTGAAGAAGCTAAATGGGATGATGAAGGGAAAAGGCTGTATTTCAGGAAAAGGGTGTTAAGGAAGAAGCTTCAGAGTGAAGTTAATCCTGTGATCCCAGTTTTAGTCCCAAATATCTTGTTGTTGTGTCTTCTATTTTGGGATCCTTTTCCTCAGTGA

Coding sequence (CDS)

ATGGAGGATACAACATGGGAGCAAAAGTTTGAAACCCTAACACACATCTTAACAAACCCAACAACAAACCCATCACTCCACTCACAATACTTCATAGCCAACCAAATTCCCTGCTACCTAAACTGGGATTACCCACCACTCCTCTGCCCCAAATACCAACACCCAACATTCAACCTAAGATGGGCTTTCTCTCTCTTCCTCAAAAGGGCCTCCAGATTAAGGGTATCTTGGAGGTCAAAGTGCCCTTATAGTCAACCCCCACCCTTAATTTTGTCCAATGGAGTTGAAGAAGCTAAATGGGATGATGAAGGGAAAAGGCTGTATTTCAGGAAAAGGGTGTTAAGGAAGAAGCTTCAGAGTGAAGTTAATCCTGTGATCCCAGTTTTAGTCCCAAATATCTTGTTGTTGTGTCTTCTATTTTGGGATCCTTTTCCTCAGTGA

Protein sequence

MEDTTWEQKFETLTHILTNPTTNPSLHSQYFIANQIPCYLNWDYPPLLCPKYQHPTFNLRWAFSLFLKRASRLRVSWRSKCPYSQPPPLILSNGVEEAKWDDEGKRLYFRKRVLRKKLQSEVNPVIPVLVPNILLLCLLFWDPFPQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo18000	Spo18000	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo18000.1	Spo18000.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18000.1.exon.1	Spo18000.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18000.1.CDS.1	Spo18000.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo18000.1 vs. NCBI nr
Match: gi|902196777|gb|KNA13199.1| (hypothetical protein SOVF_118880 [Spinacia oleracea])

HSP 1 Score: 315.5 bits (807), Expect = 5.000e-83
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1

		  
Query: 1   MEDTTWEQKFETLTHILTNPTTNPSLHSQYFIANQIPCYLNWDYPPLLCPKYQHPTFNLR 60
           MEDTTWEQKFETLTHILTNPTTNPSLHSQYFIANQIPCYLNWDYPPLLCPKYQHPTFNLR
Sbjct: 1   MEDTTWEQKFETLTHILTNPTTNPSLHSQYFIANQIPCYLNWDYPPLLCPKYQHPTFNLR 60

Query: 61  WAFSLFLKRASRLRVSWRSKCPYSQPPPLILSNGVEEAKWDDEGKRLYFRKRVLRKKLQS 120
           WAFSLFLKRASRLRVSWRSKCPYSQPPPLILSNGVEEAKWDDEGKRLYFRKRVLRKKLQS
Sbjct: 61  WAFSLFLKRASRLRVSWRSKCPYSQPPPLILSNGVEEAKWDDEGKRLYFRKRVLRKKLQS 120

Query: 121 EVNPVIPVLVPNILLLCLLFWDPFPQ 147
           EVNPVIPVLVPNILLLCLLFWDPFPQ
Sbjct: 121 EVNPVIPVLVPNILLLCLLFWDPFPQ 146

[Close]

BLAST of Spo18000.1 vs. NCBI nr
Match: gi|731350240|ref|XP_010686403.1| (PREDICTED: uncharacterized protein LOC104900628 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 249.6 bits (636), Expect = 3.400e-63
Identity = 113/149 (75.84%), Postives = 127/149 (85.23%), Query Frame = 1

		  
Query: 1   MEDTTWEQKFETLTHILTNPTTNPSLHSQYFIANQIPCYLNWDYPPLLCPKYQHPTFNLR 60
           MEDTTW QKFE LTHILTNPT NPSLHSQ+FI+ QIPCYLNWDYPPLLCPKYQHP+F+LR
Sbjct: 1   MEDTTWVQKFEALTHILTNPTRNPSLHSQFFISTQIPCYLNWDYPPLLCPKYQHPSFHLR 60

Query: 61  WAFSLFLKRASRL---RVSWRSKCPYSQPPPLILSNGVEEAKWDDEGKRLYFRKRVLRKK 120
           W FSLFLKR S       SWRSKCPY QPPPLIL+ GV+EAKWDDEGKR Y R+RV RK+
Sbjct: 61  WIFSLFLKRVSIFGTPTTSWRSKCPYIQPPPLILAKGVKEAKWDDEGKRQYMRERVSRKR 120

Query: 121 LQSEVNPVIPVLVPNILLLCLLFWDPFPQ 147
           +QS+VNP+IPVLVPN+ LL  L W+PFP+
Sbjct: 121 IQSDVNPLIPVLVPNLFLLSFLLWNPFPE 149

[Close]

BLAST of Spo18000.1 vs. NCBI nr
Match: gi|595912934|ref|XP_007214508.1| (hypothetical protein PRUPE_ppa016719mg [Prunus persica])

HSP 1 Score: 213.0 bits (541), Expect = 3.500e-52
Identity = 96/147 (65.31%), Postives = 114/147 (77.55%), Query Frame = 1

		  
Query: 1   MEDTTWEQKFETLTHILTNPTTNPSLHSQYFIANQIPCYLNWDYPPLLCPKYQHPTFNLR 60
           MEDTTWEQ+   LTH+L NPTT P LHSQ+FI+ QIPCYLNWDYPP+LC K   P  +L+
Sbjct: 1   MEDTTWEQRLHALTHVLINPTTTPPLHSQFFISTQIPCYLNWDYPPVLCTKSTFPPIHLQ 60

Query: 61  WAFSLFLKRASRL---RVSWRSKCPYSQPPPLILSNGVEEAKWDDEGKRLYFRKRVLRKK 120
           W  SLFLKR SR      SWRSKCPY  PPPLIL+ G+EEA+W DE +R  FRKR+ RK+
Sbjct: 61  WGLSLFLKRVSRFGFPETSWRSKCPYHLPPPLILAKGIEEAQWGDEQRRENFRKRMRRKR 120

Query: 121 LQSEVNPVIPVLVPNILLLCLLFWDPF 145
           L  +VNPV+P+LVPN+LLL LLFW+PF
Sbjct: 121 LGGDVNPVLPILVPNLLLLSLLFWNPF 147

[Close]

BLAST of Spo18000.1 vs. NCBI nr
Match: gi|224077064|ref|XP_002305116.1| (hypothetical protein POPTR_0004s04800g [Populus trichocarpa])

HSP 1 Score: 212.6 bits (540), Expect = 4.600e-52
Identity = 99/150 (66.00%), Postives = 117/150 (78.00%), Query Frame = 1

		  
Query: 1   MEDTTWEQKFETLTHILTNPTTNPSLHSQYFIANQIPCYLNWDYPPLLCPK--YQHPTFN 60
           MEDTTWEQ+ + LTH+LT+PTT P L+SQ+FI+ QIPCYL WDYPP+LC K     P+  
Sbjct: 1   MEDTTWEQRLQALTHLLTSPTTTPPLYSQFFISTQIPCYLKWDYPPILCTKDTKTFPSLL 60

Query: 61  LRWAFSLFLKRASRL---RVSWRSKCPYSQPPPLILSNGVEEAKWDDEGKRLYFRKRVLR 120
           LRW FSLFLKRASRL     SWRSKCPY QPPPLIL+ G+EEA+W DE +R Y RKR+ R
Sbjct: 61  LRWGFSLFLKRASRLGCPETSWRSKCPYQQPPPLILAKGLEEAQWGDEQRREYVRKRLRR 120

Query: 121 KKLQSEVNPVIPVLVPNILLLCLLFWDPFP 146
           KKL S VNP IP+LVPN+LL  L+ W+PFP
Sbjct: 121 KKLVSNVNPFIPILVPNLLLFSLMLWNPFP 150

[Close]

BLAST of Spo18000.1 vs. NCBI nr
Match: gi|698520606|ref|XP_009757118.1| (PREDICTED: uncharacterized protein LOC104210025 [Nicotiana sylvestris])

HSP 1 Score: 211.8 bits (538), Expect = 7.800e-52
Identity = 98/151 (64.90%), Postives = 117/151 (77.48%), Query Frame = 1

		  
Query: 1   MEDTTWEQKFETLTHILTNPTTNPSLHSQYFIANQIPCYLNWDYPPLLCPKYQHPTF--- 60
           MEDT W+Q+ + LTHI+TNPTT PSL SQ FI++Q+PCYLNWDYPP+LC KY   TF   
Sbjct: 1   MEDTRWDQRIQALTHIITNPTTKPSLDSQIFISSQVPCYLNWDYPPILCTKYSTNTFPSV 60

Query: 61  NLRWAFSLFLKRASRL---RVSWRSKCPYSQPPPLILSNGVEEAKWDDEGKRLYFRKRVL 120
           NLRWA S+FLKR SRL     SWRSKCPY QPPPLIL+ G+EEA W DE +RLY RKR  
Sbjct: 61  NLRWALSVFLKRVSRLGAPETSWRSKCPYQQPPPLILAKGLEEAHWGDEQRRLYVRKRFK 120

Query: 121 RKKLQSEVNPVIPVLVPNILLLCLLFWDPFP 146
           R+ L S+V+P+IP +VPN+LL  LL W+PFP
Sbjct: 121 RRHLGSDVHPLIPFIVPNLLLFSLLLWNPFP 151

[Close]

BLAST of Spo18000.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R2P4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_118880 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 3.500e-83
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1

		  
Query: 1   MEDTTWEQKFETLTHILTNPTTNPSLHSQYFIANQIPCYLNWDYPPLLCPKYQHPTFNLR 60
           MEDTTWEQKFETLTHILTNPTTNPSLHSQYFIANQIPCYLNWDYPPLLCPKYQHPTFNLR
Sbjct: 1   MEDTTWEQKFETLTHILTNPTTNPSLHSQYFIANQIPCYLNWDYPPLLCPKYQHPTFNLR 60

Query: 61  WAFSLFLKRASRLRVSWRSKCPYSQPPPLILSNGVEEAKWDDEGKRLYFRKRVLRKKLQS 120
           WAFSLFLKRASRLRVSWRSKCPYSQPPPLILSNGVEEAKWDDEGKRLYFRKRVLRKKLQS
Sbjct: 61  WAFSLFLKRASRLRVSWRSKCPYSQPPPLILSNGVEEAKWDDEGKRLYFRKRVLRKKLQS 120

Query: 121 EVNPVIPVLVPNILLLCLLFWDPFPQ 147
           EVNPVIPVLVPNILLLCLLFWDPFPQ
Sbjct: 121 EVNPVIPVLVPNILLLCLLFWDPFPQ 146

[Close]

BLAST of Spo18000.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ENP5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g182570 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.300e-63
Identity = 113/149 (75.84%), Postives = 127/149 (85.23%), Query Frame = 1

		  
Query: 1   MEDTTWEQKFETLTHILTNPTTNPSLHSQYFIANQIPCYLNWDYPPLLCPKYQHPTFNLR 60
           MEDTTW QKFE LTHILTNPT NPSLHSQ+FI+ QIPCYLNWDYPPLLCPKYQHP+F+LR
Sbjct: 1   MEDTTWVQKFEALTHILTNPTRNPSLHSQFFISTQIPCYLNWDYPPLLCPKYQHPSFHLR 60

Query: 61  WAFSLFLKRASRL---RVSWRSKCPYSQPPPLILSNGVEEAKWDDEGKRLYFRKRVLRKK 120
           W FSLFLKR S       SWRSKCPY QPPPLIL+ GV+EAKWDDEGKR Y R+RV RK+
Sbjct: 61  WIFSLFLKRVSIFGTPTTSWRSKCPYIQPPPLILAKGVKEAKWDDEGKRQYMRERVSRKR 120

Query: 121 LQSEVNPVIPVLVPNILLLCLLFWDPFPQ 147
           +QS+VNP+IPVLVPN+ LL  L W+PFP+
Sbjct: 121 IQSDVNPLIPVLVPNLFLLSFLLWNPFPE 149

[Close]

BLAST of Spo18000.1 vs. UniProtKB/TrEMBL
Match: M5WPK8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016719mg PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.400e-52
Identity = 96/147 (65.31%), Postives = 114/147 (77.55%), Query Frame = 1

		  
Query: 1   MEDTTWEQKFETLTHILTNPTTNPSLHSQYFIANQIPCYLNWDYPPLLCPKYQHPTFNLR 60
           MEDTTWEQ+   LTH+L NPTT P LHSQ+FI+ QIPCYLNWDYPP+LC K   P  +L+
Sbjct: 1   MEDTTWEQRLHALTHVLINPTTTPPLHSQFFISTQIPCYLNWDYPPVLCTKSTFPPIHLQ 60

Query: 61  WAFSLFLKRASRL---RVSWRSKCPYSQPPPLILSNGVEEAKWDDEGKRLYFRKRVLRKK 120
           W  SLFLKR SR      SWRSKCPY  PPPLIL+ G+EEA+W DE +R  FRKR+ RK+
Sbjct: 61  WGLSLFLKRVSRFGFPETSWRSKCPYHLPPPLILAKGIEEAQWGDEQRRENFRKRMRRKR 120

Query: 121 LQSEVNPVIPVLVPNILLLCLLFWDPF 145
           L  +VNPV+P+LVPN+LLL LLFW+PF
Sbjct: 121 LGGDVNPVLPILVPNLLLLSLLFWNPF 147

[Close]

BLAST of Spo18000.1 vs. UniProtKB/TrEMBL
Match: B9H2R0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04800g PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.200e-52
Identity = 99/150 (66.00%), Postives = 117/150 (78.00%), Query Frame = 1

		  
Query: 1   MEDTTWEQKFETLTHILTNPTTNPSLHSQYFIANQIPCYLNWDYPPLLCPK--YQHPTFN 60
           MEDTTWEQ+ + LTH+LT+PTT P L+SQ+FI+ QIPCYL WDYPP+LC K     P+  
Sbjct: 1   MEDTTWEQRLQALTHLLTSPTTTPPLYSQFFISTQIPCYLKWDYPPILCTKDTKTFPSLL 60

Query: 61  LRWAFSLFLKRASRL---RVSWRSKCPYSQPPPLILSNGVEEAKWDDEGKRLYFRKRVLR 120
           LRW FSLFLKRASRL     SWRSKCPY QPPPLIL+ G+EEA+W DE +R Y RKR+ R
Sbjct: 61  LRWGFSLFLKRASRLGCPETSWRSKCPYQQPPPLILAKGLEEAQWGDEQRREYVRKRLRR 120

Query: 121 KKLQSEVNPVIPVLVPNILLLCLLFWDPFP 146
           KKL S VNP IP+LVPN+LL  L+ W+PFP
Sbjct: 121 KKLVSNVNPFIPILVPNLLLFSLMLWNPFP 150

[Close]

BLAST of Spo18000.1 vs. UniProtKB/TrEMBL
Match: A0A067JB21_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21477 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.000e-50
Identity = 94/150 (62.67%), Postives = 115/150 (76.67%), Query Frame = 1

		  
Query: 1   MEDTTWEQKFETLTHILTNPTTNPSLHSQYFIANQIPCYLNWDYPPLLCPK--YQHPTFN 60
           MEDTTWEQ+ + LTHILT+P T P L+SQ+FI+N +PCYLNWDYPP+LC K     P+ +
Sbjct: 1   MEDTTWEQRLQALTHILTSPITTPDLYSQFFISNHVPCYLNWDYPPILCTKDTRSFPSLH 60

Query: 61  LRWAFSLFLKRASRL---RVSWRSKCPYSQPPPLILSNGVEEAKWDDEGKRLYFRKRVLR 120
           LRW FSLFLKR SRL     SWRSKCPY QPPPL+L+ GVEEA+W  E KR Y RKR+ R
Sbjct: 61  LRWGFSLFLKRVSRLGFPETSWRSKCPYQQPPPLVLAKGVEEAQWSAEFKREYVRKRLRR 120

Query: 121 KKLQSEVNPVIPVLVPNILLLCLLFWDPFP 146
           K L + ++P+IP+LVPN+ L  LL W+PFP
Sbjct: 121 KTLANNIHPLIPILVPNLFLFSLLLWNPFP 150

[Close]

BLAST of Spo18000.1 vs. TAIR (Arabidopsis)
Match: AT2G33855.1 (unknown protein)

HSP 1 Score: 165.2 bits (417), Expect = 2.900e-41
Identity = 80/149 (53.69%), Postives = 102/149 (68.46%), Query Frame = 1

		  
Query: 1   MEDTTWEQKFETLTHILTNPTTNPSLHSQYFIANQIPCYLNWDYPPLLCPKYQHPTFNLR 60
           ME+TTW Q+ + +THILTNPTT PSL+SQ+FI   IP Y++WDYPP+  P +       +
Sbjct: 1   MEETTWGQRIQAVTHILTNPTTKPSLYSQFFIGAIIPNYVSWDYPPVYSPTHLR-----Q 60

Query: 61  WAFSLFLKRASRLRV---SWRSKCPYSQPPPLILSNGVEEAKWDDEGKRLYFRKRVLRKK 120
           W  S F KR SR  +   SWRS  PY QPP  +++ GVEE KW  E +R Y RKR+ RK+
Sbjct: 61  WWVSQFFKRVSRFGLPDTSWRSNSPYYQPPAAVMAVGVEEGKWGKEERREYARKRLRRKR 120

Query: 121 LQSEVNPVIPVLVPNILLLCLLFWDPFPQ 147
           L +EVNP IP+LVPN+LL  LL WDP P+
Sbjct: 121 LVNEVNPYIPLLVPNLLLFTLLLWDPLPE 144

The following BLAST results are available for this feature:

BLAST of Spo18000.1 vs. NCBI nr
BLAST of Spo18000.1 vs. UniProtKB/TrEMBL
BLAST of Spo18000.1 vs. ExPASy Swiss-Prot
BLAST of Spo18000.1 vs. TAIR (Arabidopsis)

BLAST of Spo18000.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902196777\|gb\|KNA13199.1\|	5.0e-83	100.	hypothetical protein SOVF_1188...	[more]
gi\|731350240\|ref\|XP_010686403.1\|	3.4e-63	75.8	PREDICTED: uncharacterized pro...	[more]
gi\|595912934\|ref\|XP_007214508.1\|	3.5e-52	65.3	hypothetical protein PRUPE_ppa...	[more]
gi\|224077064\|ref\|XP_002305116.1\|	4.6e-52	66.0	hypothetical protein POPTR_000...	[more]
gi\|698520606\|ref\|XP_009757118.1\|	7.8e-52	64.9	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo18000.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9R2P4_SPIOL	3.5e-83	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8ENP5_BETVU	2.3e-63	75.8	Uncharacterized protein OS=Bet...	[more]
M5WPK8_PRUPE	2.4e-52	65.3	Uncharacterized protein OS=Pru...	[more]
B9H2R0_POPTR	3.2e-52	66.0	Uncharacterized protein OS=Pop...	[more]
A0A067JB21_JATCU	1.0e-50	62.6	Uncharacterized protein OS=Jat...	[more]

BLAST of Spo18000.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo18000.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT2G33855.1	2.9e-41	53.6	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38364	FAMILY NOT NAMED	coord: 1..145 score: 2.0
None	No IPR available	PANTHER	PTHR38364:SF1	SUBFAMILY NOT NAMED	coord: 1..145 score: 2.0