Spo18044.1 (mRNA) | SpinachBase

Overview


Name	Spo18044.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Phot (Precursor)
Location	SpoScf_00434 : 175495 .. 176497 (-)
Sequence length	375

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGNNNNNNNNNNCGATTTGGACGTATATGTAGAAATATTTCTCATTATTATAGCGGCTCTTCAAGAAAAAAAAGTTTGTATCGAATAAAGTATATACTTCGACTTTCTTGTGCTAGAACTTTGTCTCGTAAACACAAAAGTACTGTACGTGCTTTTTTGAAAAGATTAGGTTCAGAATTTTTAGAAGAATTCTTTACAGAGGAAGAAAAAGCTCTTTCTTTGATCTTACCAAGAGATTCTTCTATCTCACGGGGATTATATAGAGGGCGTATTTGGTATTTGGATATTATTTGTATTCATAATTTGGCCAATGATGAATGATTTATTATGAGAGTGTCTAAATGAAATGGGAATTATCCCGAAATGAATGGAGGGATAAGATAAAAAAAATTCATTCATTTTTATACTGAAATGCTTATGCAATTAAGGGTTGAATATTCAACTTTGTTCGAGTTCCCCCTAGAAAGGGAACTGAGTGTAAAATTTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGAGGTTTTTTCTTTTTTTTTTTAACAGGGAAATTATCTACTCCATCCGATTGGTTCCGGGTTCGAGTCCCGGGCAACCCATTTTTTAA

mRNA sequence

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAGTGGGAAATTATCTACTCCATCCGATTGGTTCCGGGTTCGAGTCCCGGGCAACCCATTTTTTAA

Coding sequence (CDS)

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAGTGGGAAATTATCTACTCCATCCGATTGGTTCCGGGTTCGAGTCCCGGGCAACCCATTTTTTAA

Protein sequence

MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWEIIYSIRLVPGSSPGQPIF

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo18044	Spo18044	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo18044.1	Spo18044.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18044.1.CDS.2	Spo18044.1.CDS.2	CDS
Spo18044.1.CDS.1	Spo18044.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18044.1.exon.2	Spo18044.1.exon.2	exon
Spo18044.1.exon.1	Spo18044.1.exon.1	exon

Homology

[Close]

BLAST of Spo18044.1 vs. NCBI nr
Match: gi|112030956|gb|ABH88068.1| (photosystem II protein D1 (chloroplast) [Phaseolus vulgaris])

HSP 1 Score: 214.5 bits (545), Expect = 1.000e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 7   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 66

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 67  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 111

[Close]

BLAST of Spo18044.1 vs. NCBI nr
Match: gi|296033663|gb|ADG84709.1| (PsbA, partial (plastid) [Dianthus cretaceus])

HSP 1 Score: 214.5 bits (545), Expect = 1.000e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 7   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 66

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 67  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 111

[Close]

BLAST of Spo18044.1 vs. NCBI nr
Match: gi|663060354|ref|YP_009046894.1| (photosystem II protein D1 (chloroplast) [Raphanus sativus])

HSP 1 Score: 214.5 bits (545), Expect = 1.000e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105

[Close]

BLAST of Spo18044.1 vs. NCBI nr
Match: gi|66840809|emb|CAH57473.1| (PSII 32 kD protein, partial (chloroplast) [Beta vulgaris subsp. maritima])

HSP 1 Score: 214.5 bits (545), Expect = 1.000e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105

[Close]

BLAST of Spo18044.1 vs. NCBI nr
Match: gi|669216557|gb|AII18210.1| (photosystem II protein D1, partial (chloroplast) [Viburnum clemensae])

HSP 1 Score: 214.5 bits (545), Expect = 1.000e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105

[Close]

BLAST of Spo18044.1 vs. UniProtKB/TrEMBL
Match: D6NHU5_9CARY (PsbA (Fragment) OS=Dianthus glacialis GN=psbA PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.100e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 7   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 66

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 67  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 111

[Close]

BLAST of Spo18044.1 vs. UniProtKB/TrEMBL
Match: A0A142DR16_9LAMI (Photosystem II protein D1 OS=Stachys coccinea GN=psbA PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.100e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105

[Close]

BLAST of Spo18044.1 vs. UniProtKB/TrEMBL
Match: A0A0K1ZAL6_NEPCA (Photosystem II protein D1 OS=Nepeta cataria GN=psbA PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.100e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105

[Close]

BLAST of Spo18044.1 vs. UniProtKB/TrEMBL
Match: F1KBY7_CARCG (Photosystem II protein D1 OS=Carpenteria californica GN=psbA PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.100e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105

[Close]

BLAST of Spo18044.1 vs. UniProtKB/TrEMBL
Match: A0A161G3M7_9SOLA (Photosystem II protein D1 OS=Iochroma grandiflorum GN=psbA PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.100e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105

[Close]

BLAST of Spo18044.1 vs. ExPASy Swiss-Prot
Match: PSBA_NASOF (Photosystem II protein D1 OS=Nasturtium officinale GN=psbA PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.400e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105

[Close]

BLAST of Spo18044.1 vs. ExPASy Swiss-Prot
Match: PSBA_MANES (Photosystem II protein D1 OS=Manihot esculenta GN=psbA PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.400e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105

[Close]

BLAST of Spo18044.1 vs. ExPASy Swiss-Prot
Match: PSBA_LACSA (Photosystem II protein D1 OS=Lactuca sativa GN=psbA PE=3 SV=2)

HSP 1 Score: 214.5 bits (545), Expect = 6.400e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105

[Close]

BLAST of Spo18044.1 vs. ExPASy Swiss-Prot
Match: PSBA_JASNU (Photosystem II protein D1 OS=Jasminum nudiflorum GN=psbA PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.400e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105

[Close]

BLAST of Spo18044.1 vs. ExPASy Swiss-Prot
Match: PSBA_VIGUN (Photosystem II protein D1 OS=Vigna unguiculata GN=psbA PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.400e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105

[Close]

BLAST of Spo18044.1 vs. TAIR (Arabidopsis)
Match: ATCG00020.1 (photosystem II reaction center protein A)

HSP 1 Score: 214.5 bits (545), Expect = 3.600e-56
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105

The following BLAST results are available for this feature:

BLAST of Spo18044.1 vs. NCBI nr
BLAST of Spo18044.1 vs. UniProtKB/TrEMBL
BLAST of Spo18044.1 vs. ExPASy Swiss-Prot
BLAST of Spo18044.1 vs. TAIR (Arabidopsis)

BLAST of Spo18044.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|112030956\|gb\|ABH88068.1\|	1.0e-52	100.	photosystem II protein D1 (chl...	[more]
gi\|296033663\|gb\|ADG84709.1\|	1.0e-52	100.	PsbA, partial (plastid) [Diant...	[more]
gi\|663060354\|ref\|YP_009046894.1\|	1.0e-52	100.	photosystem II protein D1 (chl...	[more]
gi\|66840809\|emb\|CAH57473.1\|	1.0e-52	100.	PSII 32 kD protein, partial (c...	[more]
gi\|669216557\|gb\|AII18210.1\|	1.0e-52	100.	photosystem II protein D1, par...	[more]

BLAST of Spo18044.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
D6NHU5_9CARY	7.1e-53	100.	PsbA (Fragment) OS=Dianthus gl...	[more]
A0A142DR16_9LAMI	7.1e-53	100.	Photosystem II protein D1 OS=S...	[more]
A0A0K1ZAL6_NEPCA	7.1e-53	100.	Photosystem II protein D1 OS=N...	[more]
F1KBY7_CARCG	7.1e-53	100.	Photosystem II protein D1 OS=C...	[more]
A0A161G3M7_9SOLA	7.1e-53	100.	Photosystem II protein D1 OS=I...	[more]

BLAST of Spo18044.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
PSBA_NASOF	6.4e-55	100.	Photosystem II protein D1 OS=N...	[more]
PSBA_MANES	6.4e-55	100.	Photosystem II protein D1 OS=M...	[more]
PSBA_LACSA	6.4e-55	100.	Photosystem II protein D1 OS=L...	[more]
PSBA_JASNU	6.4e-55	100.	Photosystem II protein D1 OS=J...	[more]
PSBA_VIGUN	6.4e-55	100.	Photosystem II protein D1 OS=V...	[more]

BLAST of Spo18044.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
ATCG00020.1	3.6e-56	100.	photosystem II reaction center...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	GENE3D	1.20.85.10		coord: 12..99 score: 7.2
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 28..98 score: 1.2
IPR000484	Photosynthetic reaction centre, L/M	unknown	SSF81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 12..106 score: 1.18
None	No IPR available	PANTHER	PTHR33149	FAMILY NOT NAMED	coord: 2..105 score: 1.7
None	No IPR available	PANTHER	PTHR33149:SF6	SUBFAMILY NOT NAMED	coord: 2..105 score: 1.7

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity