Spo18059.1 (mRNA)

Overview
NameSpo18059.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionDNA-directed RNA polymerase (2.7.7.6)
LocationSpoScf_06354 : 486 .. 4391 (-)
Sequence length732
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTGACAAAAAAGCCCAAACTTCACATTGGGAATGGGATAAGGAGGAGAAGATCCTTCCCTGAGATATTATCTGAATTGTTGTCTCCATAATATGGCAGGTATGCAGCACCTATAGAAGCTCATATAGAGTATGTCACTGAAAGTGCTGGTCAAAAGGAATTACGTACTAAGGTATGTATGTGTTATTGGGCATGAGTGTTACATAAGCAAATAAAAATTATTACATCGCCTCTCACGTCTATATATTCCATAATTGGCAGAAAGATGTAATTATAGGAAAAATGCCTATCATGTTACGAAGTGATCGCTGTGTGTTATATGGGAAGGATGAGACAGAGCTAGCCAAACTTGGTTTGTCACTGCCCTACCTGAAGCATATTCTTTCAATTTCTACCTCAGTGACTCTTGTAATACTGATTTTTTTTTCATCAGGTGAATGCCCCCTTGATCCTGGAGGGTATTTTGTCGTGAAAGGAAATGAAAAGGTGCTTTTTAGGCTGCTTTATCTGCAGCATTCATTCAGTTAATACATACTTAGTAAACTTAGTCTTTCTTTTTTCTGCTGCTTCATCTTTGTCCATCTTATGCATGGTGTGATAGCTATATAGTTGGTTTCTTTTCTTTTAGAGGGTGTTGCATAGCTAGAGTCCAGTGATGAAATTTATATTTGAGTGGAAGTTTCTCTTGATTTTGTTAACAACATTACGCTTCATTAGCCAAGGGCCCTTCTTTACATAGAAGAAACCCCCTTACTGCTGTCAACACTATCCCAATGAATCTAGAGAGATTCCCGTCCCAAACGAGGCAAGGGAGGTTGTATGTACCTAGCTTTTATCCCTATGATAAGAGAGAGGCTGCTTAATTTGGAGAAAAGAGATTGGGTTCGTGCAGCAAAAAAAAAACTCTTAGCCTCATGGCGTTGGTGTATGGAAAGGTATTTTATGAATTTCACCAGGTTTAGATGTTTAAGTGCATGACTCTGTGGTGGGTTTTAGGGTAAAGAGTGGCTTAAGAGTATTCTTTCGGAATGAGGTTTGGTCAGATGAATGACCCTTGAATACTAAATCTATACTAATATATTAAAAGGTGTTTATGAAAACGTATATGTGTCACGTATGCCTCATCCTTACTACGCCACGTCATCACTAATATGCATCATGGCATGTTATTGACAACCAAAAAAATCATGTAGCATGGATCGAACATCAAACCTCATGGATTAAAGTTTCACTTCCTACCATCTTAACTAGCTACAATTTATGTTATATTTTCCCATATAAATGTAAAATACAATCTTTAAAAATGGGCACATTTTTACAAAAAGTAAACCCCACTAAAAGTAAAACCCGGAGCAACGCCCGGGCCACACACTAGTTTCCAGATCTTTAAAGGGTGGCAGACATCCACGAAAGATGCTACGCCGCTACGGTGAATGACGTAGTGTCATGGAATGGCTCTTAAATGTCTTGGGACTTGTCCTTCTCCATACGTAATGACTAGAAGATGCTATCTGCAGTTTCTCGAGTCCTGAATTAGCTATCTAGTGGAGCATATTGAACCTAGTGGAGCATATTTTATGATTTGTCTGCGTGGTGTAGGATTTTAGAAGTGTTTTCTTATAAATTTCTGCAATATGCTTAAGGAGCTGATAATTAAATTTCTGAGGCTGTCTGAGGTCCAAGGCTCCTCTAAAAGCATGTCTCAATTCACTGGAAAGATCTTACTGAGAAAATGTGCTCAAATGGAGGATTTTCAGTCTTCCAAGCATCTGGAATTTCCACTGGTACACAACGTGTAGTTAGTCGCAGTTTGAATTTCATTGGATCCAAAAATGGAAAGGCGTTCTTATAAGTTGGAAGAGGAGGTCGGAGGAAAATTTTATTTCGGATTTGTGCATGCTAGTTTTGTTGGCTTTTTGATTTTGTACTTTAAAGGAAAAGAATCAGCAGAATTTTTATGGGGAAAACCTTACCACTTTGCCCTCCTTTGTGCACAGGGTTGACACTTCATTTCTGTCTTGTTTAATACTATTCTAGGTTAATGAAAAGTTTCTGTATCAAAATGTTGATCATAGAATGCTAATCCAATAAGCTAAAATTTTTCTTTTGCCTTACTTTTTATTTGCAGGTGATTCAGATTCAAGAGCAACTGTTGAATAACAGAATAATCATAGAAGTTGATAAGAAGGGAAAGTGAGTTTAGTACTTGACTTTGTTTCTTTATCATTTTCTAAGCTTTTTCGGCTCCCAATTTGACCTTAATGGATATACATTACTGCATTAGGAATTTGGAGCCCCTTAGCTGTACATGCACCTCCAACTGTTTTTTCAGACAGAAGAAAAAATGAAAGAGGCTGAACCGCTGAAGTGGGTGCTTCATCATGTCCCTCCCACAATAGCAGACTGGACTAATTGCAACACCCAAGAATTAATTCAACTATCTAACTTAAAATATAAATAATAAAATAAATAATTTATAATATAATCATCAACAAAATCACTAAAAGTATTTATAACATTTTGAGGAACTATAGTGTACACCATGCATCATATATCAATGCAGGGAGGTAGGTAGAGAATACTTGGGCGAACGACAAGAAACAAGCAAAAAAGTGGATAATCCTTGCAATGGTATCTATATAGCATGTGGATTGTGATAAAGGAAAATGATTGTATGAAAATCATACACCTCCGGTTCCCGTCAATAAATTTCGATGTCAATAGCTCGAACATTTTGTGTGATGTTAGGATCTTAGGAACCATCGTTTGAGGACGCAGGTTGAACATATCAACCACAGTATTCTTGATGCATTTTTATTATGTTACTGTTTGAATCAGTATTACAGATGCTATTAGTAGACAAACATCCACTAATTTCATTCCTAAGTGAACTCTTTGTTTAACATAGTATCAAGTATAGGTGCTTTACATGCTCTAACTAATGAAAGCTTTTTTTTTAAATGTAAATGATTAAGCCATTCTCCTGAACATAAAGATTGCTTGCTTTTGAAAATCAGGCCTTCGATTTTGTTTGGGGATTTGTTTGACTGGTTGAGTAAATTGTAATAGTGTTTATCAAGCACTCTGCATATTATTAAATTACCAAAGCAGAAAAAGGGAAGAGCCTTGAGTGAAGGATGCCGTGTCTAACATATCTCAATTCGACCTGTATGAGTTATAACAATAAGTAACTTGTAGATCAAATGTAGAATGACGCTGTGAAGTTGGACTGCCAATCATACGTCATCAATCTTTGCTGATACTTTGGTAAAATCTGGACATCCATCGTTACTTTTCAATCTCCCCCAAGTTTTGAATATAATTAGAAAGATGTGGTTTACCTTCTCACCGCATTTCTCTGATCTGCTGATTATTTCATTATTCTGACATTGCCTAATAACTAAAGATTATTGGCCTATTAGGTTGAGCAGCCTTTCTAATTTCAATTTTGTGTTTCAGTTTGGTTGCATCTGTCACATGCAGTGCTGCAACATTAAGGACCAAAAGTATCATAGTGATGGAAAAAGAGAAAATATATCTACAACTCAATTCATTTCAGACTAAGGTATTGTTTTCATGTTACACGAGTCTGACATTTAATAGTTATTGTTTTCTCATTATTTGATGTTAATTGGAAGTAGCTTTTGCCTTCTACTTTCAGGTTCCCATTATGGTGGTGATGAAGGCAATGGGTATGCAGAGTGACCAAGAAGTTGTGCAAATGATTGGACGAGATCCACGCTACAGTTCTTTACTCTTGCCTTCTATTGAGGTAACTTACATAGTACTCCCTTCTGTATTATTTCTTTTTATTTCTTTTTACCTGTTTTCCTTATCAAGATGCGAAGTATTTTATATCTTATCTACGGAGTACTGAAACACACTTATTTGGACATAATTTTATC

mRNA sequence

ACTTGACAAAAAAGCCCAAACTTCACATTGGGAATGGGATAAGGAGGAGAAGATCCTTCCCTGAGATATTATCTGAATTGTTGTCTCCATAATATGGCAGGTATGCAGCACCTATAGAAGCTCATATAGAGTATGTCACTGAAAGTGCTGGTCAAAAGGAATTACGTACTAAGAAAGATGTAATTATAGGAAAAATGCCTATCATGTTACGAAGTGATCGCTGTGTGTTATATGGGAAGGATGAGACAGAGCTAGCCAAACTTGGTGAATGCCCCCTTGATCCTGGAGGGTATTTTGTCGTGAAAGGAAATGAAAAGGTGATTCAGATTCAAGAGCAACTGTTGAATAACAGAATAATCATAGAAGTTGATAAGAAGGGAAATTTGGTTGCATCTGTCACATGCAGTGCTGCAACATTAAGGACCAAAAGTATCATAGTGATGGAAAAAGAGAAAATATATCTACAACTCAATTCATTTCAGACTAAGGTTCCCATTATGGTGGTGATGAAGGCAATGGGTATGCAGAGTGACCAAGAAGTTGTGCAAATGATTGGACGAGATCCACGCTACAGTTCTTTACTCTTGCCTTCTATTGAGGTAACTTACATAGTACTCCCTTCTGTATTATTTCTTTTTATTTCTTTTTACCTGTTTTCCTTATCAAGATGCGAAGTATTTTATATCTTATCTACGGAGTACTGAAACACACTTATTTGGACATAATTTTATC

Coding sequence (CDS)

ATGCCTATCATGTTACGAAGTGATCGCTGTGTGTTATATGGGAAGGATGAGACAGAGCTAGCCAAACTTGGTGAATGCCCCCTTGATCCTGGAGGGTATTTTGTCGTGAAAGGAAATGAAAAGGTGATTCAGATTCAAGAGCAACTGTTGAATAACAGAATAATCATAGAAGTTGATAAGAAGGGAAATTTGGTTGCATCTGTCACATGCAGTGCTGCAACATTAAGGACCAAAAGTATCATAGTGATGGAAAAAGAGAAAATATATCTACAACTCAATTCATTTCAGACTAAGGTTCCCATTATGGTGGTGATGAAGGCAATGGGTATGCAGAGTGACCAAGAAGTTGTGCAAATGATTGGACGAGATCCACGCTACAGTTCTTTACTCTTGCCTTCTATTGAGGTAACTTACATAGTACTCCCTTCTGTATTATTTCTTTTTATTTCTTTTTACCTGTTTTCCTTATCAAGATGCGAAGTATTTTATATCTTATCTACGGAGTACTGA

Protein sequence

MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDKKGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQMIGRDPRYSSLLLPSIEVTYIVLPSVLFLFISFYLFSLSRCEVFYILSTEY
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo18059Spo18059gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo18059.1Spo18059.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18059.1.utr5p.2Spo18059.1.utr5p.2five_prime_UTR
Spo18059.1.utr5p.1Spo18059.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18059.1.CDS.5Spo18059.1.CDS.5CDS
Spo18059.1.CDS.4Spo18059.1.CDS.4CDS
Spo18059.1.CDS.3Spo18059.1.CDS.3CDS
Spo18059.1.CDS.2Spo18059.1.CDS.2CDS
Spo18059.1.CDS.1Spo18059.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18059.1.utr3p.1Spo18059.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18059.1.exon.6Spo18059.1.exon.6exon
Spo18059.1.exon.5Spo18059.1.exon.5exon
Spo18059.1.exon.4Spo18059.1.exon.4exon
Spo18059.1.exon.3Spo18059.1.exon.3exon
Spo18059.1.exon.2Spo18059.1.exon.2exon
Spo18059.1.exon.1Spo18059.1.exon.1exon


Homology
[Close]
BLAST of Spo18059.1 vs. NCBI nr
Match: gi|870847086|gb|KMS99525.1| (hypothetical protein BVRB_1g022970 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 235.0 bits (598), Expect = 9.900e-59
Identity = 118/135 (87.41%), Postives = 124/135 (91.85%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDK 60
           MP+MLRS  CVLYGKDETELAKLGECPLDPGGYF+VKGNEKVI IQEQL NNRIIIE+DK
Sbjct: 107 MPVMLRSRCCVLYGKDETELAKLGECPLDPGGYFIVKGNEKVIMIQEQLSNNRIIIEIDK 166

Query: 61  KGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQMI 120
           KGNL ASVT S   LR+KS+IVMEKEKIYLQLN FQ+KVPIM VMKAMGMQSDQEVVQMI
Sbjct: 167 KGNLAASVTSSGVALRSKSVIVMEKEKIYLQLNQFQSKVPIMAVMKAMGMQSDQEVVQMI 226

Query: 121 GRDPRYSSLLLPSIE 136
           GRDPRYSSLLLPSIE
Sbjct: 227 GRDPRYSSLLLPSIE 241
[Close]
BLAST of Spo18059.1 vs. NCBI nr
Match: gi|731362348|ref|XP_010692846.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 235.0 bits (598), Expect = 9.900e-59
Identity = 118/135 (87.41%), Postives = 124/135 (91.85%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDK 60
           MP+MLRS  CVLYGKDETELAKLGECPLDPGGYF+VKGNEKVI IQEQL NNRIIIE+DK
Sbjct: 145 MPVMLRSRCCVLYGKDETELAKLGECPLDPGGYFIVKGNEKVIMIQEQLSNNRIIIEIDK 204

Query: 61  KGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQMI 120
           KGNL ASVT S   LR+KS+IVMEKEKIYLQLN FQ+KVPIM VMKAMGMQSDQEVVQMI
Sbjct: 205 KGNLAASVTSSGVALRSKSVIVMEKEKIYLQLNQFQSKVPIMAVMKAMGMQSDQEVVQMI 264

Query: 121 GRDPRYSSLLLPSIE 136
           GRDPRYSSLLLPSIE
Sbjct: 265 GRDPRYSSLLLPSIE 279
[Close]
BLAST of Spo18059.1 vs. NCBI nr
Match: gi|731362350|ref|XP_010692847.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 235.0 bits (598), Expect = 9.900e-59
Identity = 118/135 (87.41%), Postives = 124/135 (91.85%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDK 60
           MP+MLRS  CVLYGKDETELAKLGECPLDPGGYF+VKGNEKVI IQEQL NNRIIIE+DK
Sbjct: 108 MPVMLRSRCCVLYGKDETELAKLGECPLDPGGYFIVKGNEKVIMIQEQLSNNRIIIEIDK 167

Query: 61  KGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQMI 120
           KGNL ASVT S   LR+KS+IVMEKEKIYLQLN FQ+KVPIM VMKAMGMQSDQEVVQMI
Sbjct: 168 KGNLAASVTSSGVALRSKSVIVMEKEKIYLQLNQFQSKVPIMAVMKAMGMQSDQEVVQMI 227

Query: 121 GRDPRYSSLLLPSIE 136
           GRDPRYSSLLLPSIE
Sbjct: 228 GRDPRYSSLLLPSIE 242
[Close]
BLAST of Spo18059.1 vs. NCBI nr
Match: gi|970058639|ref|XP_015056027.1| (PREDICTED: DNA-directed RNA polymerase III subunit 2 [Solanum pennellii])

HSP 1 Score: 209.9 bits (533), Expect = 3.400e-51
Identity = 105/135 (77.78%), Postives = 119/135 (88.15%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDK 60
           MPIMLRS  CVLYGKDE ELA+LGECPLDPGGYFV+KG EKVI IQEQL  NRIII+ DK
Sbjct: 146 MPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDK 205

Query: 61  KGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQMI 120
           KG++ ASVT S    ++K+II MEKEK+YL+LN F+TKVPIMVVMKAMGM+SDQEVVQMI
Sbjct: 206 KGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTKVPIMVVMKAMGMESDQEVVQMI 265

Query: 121 GRDPRYSSLLLPSIE 136
           GRDPR+S+LLLPSIE
Sbjct: 266 GRDPRFSALLLPSIE 280
[Close]
BLAST of Spo18059.1 vs. NCBI nr
Match: gi|565393085|ref|XP_006362214.1| (PREDICTED: DNA-directed RNA polymerase III subunit 2-like [Solanum tuberosum])

HSP 1 Score: 209.9 bits (533), Expect = 3.400e-51
Identity = 105/135 (77.78%), Postives = 119/135 (88.15%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDK 60
           MPIMLRS  CVLYGKDE ELA+LGECPLDPGGYFV+KG EKVI IQEQL  NRIII+ DK
Sbjct: 146 MPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDK 205

Query: 61  KGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQMI 120
           KG++ ASVT S    ++K+II MEKEK+YL+LN F+TKVPIMVVMKAMGM+SDQEVVQMI
Sbjct: 206 KGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTKVPIMVVMKAMGMESDQEVVQMI 265

Query: 121 GRDPRYSSLLLPSIE 136
           GRDPR+S+LLLPSIE
Sbjct: 266 GRDPRFSALLLPSIE 280
[Close]
BLAST of Spo18059.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BDX4_BETVU (DNA-directed RNA polymerase subunit beta OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g022970 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 6.900e-59
Identity = 118/135 (87.41%), Postives = 124/135 (91.85%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDK 60
           MP+MLRS  CVLYGKDETELAKLGECPLDPGGYF+VKGNEKVI IQEQL NNRIIIE+DK
Sbjct: 145 MPVMLRSRCCVLYGKDETELAKLGECPLDPGGYFIVKGNEKVIMIQEQLSNNRIIIEIDK 204

Query: 61  KGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQMI 120
           KGNL ASVT S   LR+KS+IVMEKEKIYLQLN FQ+KVPIM VMKAMGMQSDQEVVQMI
Sbjct: 205 KGNLAASVTSSGVALRSKSVIVMEKEKIYLQLNQFQSKVPIMAVMKAMGMQSDQEVVQMI 264

Query: 121 GRDPRYSSLLLPSIE 136
           GRDPRYSSLLLPSIE
Sbjct: 265 GRDPRYSSLLLPSIE 279
[Close]
BLAST of Spo18059.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E8V1_BETVU (DNA-directed RNA polymerase subunit beta OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g022970 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 6.900e-59
Identity = 118/135 (87.41%), Postives = 124/135 (91.85%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDK 60
           MP+MLRS  CVLYGKDETELAKLGECPLDPGGYF+VKGNEKVI IQEQL NNRIIIE+DK
Sbjct: 107 MPVMLRSRCCVLYGKDETELAKLGECPLDPGGYFIVKGNEKVIMIQEQLSNNRIIIEIDK 166

Query: 61  KGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQMI 120
           KGNL ASVT S   LR+KS+IVMEKEKIYLQLN FQ+KVPIM VMKAMGMQSDQEVVQMI
Sbjct: 167 KGNLAASVTSSGVALRSKSVIVMEKEKIYLQLNQFQSKVPIMAVMKAMGMQSDQEVVQMI 226

Query: 121 GRDPRYSSLLLPSIE 136
           GRDPRYSSLLLPSIE
Sbjct: 227 GRDPRYSSLLLPSIE 241
[Close]
BLAST of Spo18059.1 vs. UniProtKB/TrEMBL
Match: M1ATE0_SOLTU (DNA-directed RNA polymerase subunit beta OS=Solanum tuberosum GN=PGSC0003DMG400011444 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.400e-51
Identity = 105/135 (77.78%), Postives = 119/135 (88.15%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDK 60
           MPIMLRS  CVLYGKDE ELA+LGECPLDPGGYFV+KG EKVI IQEQL  NRIII+ DK
Sbjct: 146 MPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDK 205

Query: 61  KGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQMI 120
           KG++ ASVT S    ++K+II MEKEK+YL+LN F+TKVPIMVVMKAMGM+SDQEVVQMI
Sbjct: 206 KGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTKVPIMVVMKAMGMESDQEVVQMI 265

Query: 121 GRDPRYSSLLLPSIE 136
           GRDPR+S+LLLPSIE
Sbjct: 266 GRDPRFSALLLPSIE 280
[Close]
BLAST of Spo18059.1 vs. UniProtKB/TrEMBL
Match: K4D2C7_SOLLC (DNA-directed RNA polymerase subunit beta OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.400e-51
Identity = 105/135 (77.78%), Postives = 119/135 (88.15%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDK 60
           MPIMLRS  CVLYGKDE ELA+LGECPLDPGGYFV+KG EKVI IQEQL  NRIII+ DK
Sbjct: 146 MPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDK 205

Query: 61  KGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQMI 120
           KG++ ASVT S    ++K+II MEKEK+YL+LN F+TKVPIMVVMKAMGM+SDQEVVQMI
Sbjct: 206 KGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTKVPIMVVMKAMGMESDQEVVQMI 265

Query: 121 GRDPRYSSLLLPSIE 136
           GRDPR+S+LLLPSIE
Sbjct: 266 GRDPRFSALLLPSIE 280
[Close]
BLAST of Spo18059.1 vs. UniProtKB/TrEMBL
Match: A0A0R0LEF4_SOYBN (DNA-directed RNA polymerase subunit beta OS=Glycine max GN=GLYMA_01G006500 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.100e-51
Identity = 103/135 (76.30%), Postives = 117/135 (86.67%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDK 60
           MPIMLRS  CVL+GKDE ELAKLGECPLDPGGYFV+KG EKVI IQEQL  NRIII+ DK
Sbjct: 53  MPIMLRSCCCVLHGKDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDK 112

Query: 61  KGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQMI 120
           KGN+ ASVT S   ++TK++IVME EK++LQLN F  KVP+MVVMKAMGM+SDQEV+QM+
Sbjct: 113 KGNITASVTSSTEKIKTKTVIVMENEKLWLQLNKFPKKVPLMVVMKAMGMESDQEVIQMV 172

Query: 121 GRDPRYSSLLLPSIE 136
           GRDPRYS LLLPSIE
Sbjct: 173 GRDPRYSFLLLPSIE 187
[Close]
BLAST of Spo18059.1 vs. ExPASy Swiss-Prot
Match: NRPC2_ARATH (DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana GN=NRPC2 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.200e-49
Identity = 95/135 (70.37%), Postives = 116/135 (85.93%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDK 60
           MPIMLRS RCVL+GKDE ELA+LGECPLDPGGYF++KG EKV+ IQEQL  NRIII+ DK
Sbjct: 145 MPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDSDK 204

Query: 61  KGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQMI 120
           KGN+ ASVT S    ++K++I MEKEKIYL L+ F  K+PI++V+KAMGM+SDQE+VQM+
Sbjct: 205 KGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKAMGMESDQEIVQMV 264

Query: 121 GRDPRYSSLLLPSIE 136
           GRDPR+S+ LLPSIE
Sbjct: 265 GRDPRFSASLLPSIE 279
[Close]
BLAST of Spo18059.1 vs. ExPASy Swiss-Prot
Match: RPC2_SCHPO (DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 5.900e-35
Identity = 75/137 (54.74%), Postives = 101/137 (73.72%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVD- 60
           MP+MLRS++CVL GK+E E+A L ECPLDPGGYF+VKG EKVI +QEQL  NRII+E + 
Sbjct: 160 MPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNRIIVEAEP 219

Query: 61  KKGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQM 120
           KKG   ASVT S    ++K+ ++ +  K+YL+ NS    +PI+VV+KAMG+QSDQE+ ++
Sbjct: 220 KKGLWQASVTSSTHERKSKTYVITKNGKLYLKHNSVADDIPIVVVLKAMGLQSDQEIFEL 279

Query: 121 I-GRDPRYSSLLLPSIE 136
           + G +  Y  L  PSIE
Sbjct: 280 VAGAEASYQDLFAPSIE 296
[Close]
BLAST of Spo18059.1 vs. ExPASy Swiss-Prot
Match: RPC2_MOUSE (DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus GN=Polr3b PE=1 SV=2)

HSP 1 Score: 146.7 bits (369), Expect = 2.200e-34
Identity = 72/135 (53.33%), Postives = 97/135 (71.85%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDK 60
           MPIMLRS  CVL GK   E AKL ECPLDPGGYF+VKG EKVI IQEQL  NRII+E D+
Sbjct: 136 MPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR 195

Query: 61  KGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQMI 120
           KG + ASVT S    ++++ + +++ + YL+ N+    +PI+++ KAMG++SDQE+VQMI
Sbjct: 196 KGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMI 255

Query: 121 GRDPRYSSLLLPSIE 136
           G +    +   PS+E
Sbjct: 256 GTEEHVMAAFGPSLE 270
[Close]
BLAST of Spo18059.1 vs. ExPASy Swiss-Prot
Match: RPC2_HUMAN (DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens GN=POLR3B PE=1 SV=2)

HSP 1 Score: 146.7 bits (369), Expect = 2.200e-34
Identity = 72/135 (53.33%), Postives = 97/135 (71.85%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDK 60
           MPIMLRS  CVL GK   E AKL ECPLDPGGYF+VKG EKVI IQEQL  NRII+E D+
Sbjct: 136 MPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR 195

Query: 61  KGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQMI 120
           KG + ASVT S    ++++ + +++ + YL+ N+    +PI+++ KAMG++SDQE+VQMI
Sbjct: 196 KGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMI 255

Query: 121 GRDPRYSSLLLPSIE 136
           G +    +   PS+E
Sbjct: 256 GTEEHVMAAFGPSLE 270
[Close]
BLAST of Spo18059.1 vs. ExPASy Swiss-Prot
Match: RPC2_YEAST (DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 7.200e-33
Identity = 70/137 (51.09%), Postives = 99/137 (72.26%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVD- 60
           MPIMLRS++C+LY  DE+++AKL ECPLDPGGYF+V G EKVI +QEQL  NRII+E D 
Sbjct: 152 MPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADE 211

Query: 61  KKGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQM 120
           KKG + ASVT S    ++K+ ++ +  KIYL+ NS   ++PI +V+KA G+ SD E++Q+
Sbjct: 212 KKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGILSDLEIMQL 271

Query: 121 I-GRDPRYSSLLLPSIE 136
           + G D  Y  +   ++E
Sbjct: 272 VCGNDSSYQDIFAVNLE 288
[Close]
BLAST of Spo18059.1 vs. TAIR (Arabidopsis)
Match: AT5G45140.1 (nuclear RNA polymerase C2)

HSP 1 Score: 196.1 bits (497), Expect = 1.800e-50
Identity = 95/135 (70.37%), Postives = 116/135 (85.93%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDK 60
           MPIMLRS RCVL+GKDE ELA+LGECPLDPGGYF++KG EKV+ IQEQL  NRIII+ DK
Sbjct: 145 MPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDSDK 204

Query: 61  KGNLVASVTCSAATLRTKSIIVMEKEKIYLQLNSFQTKVPIMVVMKAMGMQSDQEVVQMI 120
           KGN+ ASVT S    ++K++I MEKEKIYL L+ F  K+PI++V+KAMGM+SDQE+VQM+
Sbjct: 205 KGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKAMGMESDQEIVQMV 264

Query: 121 GRDPRYSSLLLPSIE 136
           GRDPR+S+ LLPSIE
Sbjct: 265 GRDPRFSASLLPSIE 279
[Close]
BLAST of Spo18059.1 vs. TAIR (Arabidopsis)
Match: AT4G21710.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.400e-15
Identity = 49/159 (30.82%), Postives = 84/159 (52.83%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDK 60
           +PIMLRS  C L+   E +L +LGECP D GGYF++ G+EKV+  QE++  N + +   +
Sbjct: 158 VPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 217

Query: 61  KGNLVASV--TCSAATLRTKSIIVM--------------EKEKIYLQLNSFQTKVPIMVV 120
           + N  A V    S A  + +    M                + I   L   +T++PI++V
Sbjct: 218 QPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIV 277

Query: 121 MKAMGMQSDQEVVQMI---GRDPRYSSLLLPSIEVTYIV 141
            +A+G  +D+++++ I     D +   LL PS+E  +++
Sbjct: 278 FRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVI 316
[Close]
BLAST of Spo18059.1 vs. TAIR (Arabidopsis)
Match: AT3G23780.1 (nuclear RNA polymerase D2A)

HSP 1 Score: 62.4 bits (150), Expect = 3.100e-10
Identity = 47/148 (31.76%), Postives = 77/148 (52.03%), Query Frame = 1 

		  

Query: 1   MPIMLRSDRCVLYGKDETELAKLGECPLDPGGYFVVKGNEKVIQIQEQLLNNRIIIEVDK 60
           +P+M++S  C    K + E  K G+C  D GGYFV+KG EKV   QEQ+   R+ I    
Sbjct: 176 IPVMVKSILCKTSEKGK-ENCKKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWIS--- 235

Query: 61  KGNLVASVTCSAATLRTKSIIVM---EKEKIY------LQLNSFQTKVPIMVVMKAMGMQ 120
             N   +V+  +   R + I+ +   EK + Y      L +    T++P+ ++  A+G+ 
Sbjct: 236 --NSPWTVSFRSENKRNRFIVRLSENEKAEDYKRREKVLTVYFLSTEIPVWLLFFALGVS 295

Query: 121 SDQEVVQMI---GRDPRYSSLLLPSIEV 137
           SD+E + +I   G D   ++ L+ SI V
Sbjct: 296 SDKEAMDLIAFDGDDASITNSLIASIHV 317
The following BLAST results are available for this feature:
BLAST of Spo18059.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|870847086|gb|KMS99525.1|9.9e-5987.4hypothetical protein BVRB_1g02... [more]
gi|731362348|ref|XP_010692846.1|9.9e-5987.4PREDICTED: DNA-directed RNA po... [more]
gi|731362350|ref|XP_010692847.1|9.9e-5987.4PREDICTED: DNA-directed RNA po... [more]
gi|970058639|ref|XP_015056027.1|3.4e-5177.7PREDICTED: DNA-directed RNA po... [more]
gi|565393085|ref|XP_006362214.1|3.4e-5177.7PREDICTED: DNA-directed RNA po... [more]
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BLAST of Spo18059.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8BDX4_BETVU6.9e-5987.4DNA-directed RNA polymerase su... [more]
A0A0J8E8V1_BETVU6.9e-5987.4DNA-directed RNA polymerase su... [more]
M1ATE0_SOLTU2.4e-5177.7DNA-directed RNA polymerase su... [more]
K4D2C7_SOLLC2.4e-5177.7DNA-directed RNA polymerase su... [more]
A0A0R0LEF4_SOYBN4.1e-5176.3DNA-directed RNA polymerase su... [more]
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BLAST of Spo18059.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NRPC2_ARATH3.2e-4970.3DNA-directed RNA polymerase II... [more]
RPC2_SCHPO5.9e-3554.7DNA-directed RNA polymerase II... [more]
RPC2_MOUSE2.2e-3453.3DNA-directed RNA polymerase II... [more]
RPC2_HUMAN2.2e-3453.3DNA-directed RNA polymerase II... [more]
RPC2_YEAST7.2e-3351.0DNA-directed RNA polymerase II... [more]
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BLAST of Spo18059.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT5G45140.11.8e-5070.3nuclear RNA polymerase C2[more]
AT4G21710.11.4e-1530.8DNA-directed RNA polymerase fa... [more]
AT3G23780.13.1e-1031.7nuclear RNA polymerase D2A[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007642RNA polymerase Rpb2, domain 2GENE3D3.90.1110.10coord: 52..136
score: 1.6
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 51..129
score: 2.
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 1..48
score: 1.5
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..135
score: 1.9
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 1..135
score: 1.9
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..160
score: 1.8

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding