Spo18185.1 (mRNA)

Overview
NameSpo18185.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description6.7 kDa chloroplast outer envelope membrane protein (E 6.7)
Locationchr4 : 122326515 .. 122326703 (+)
Sequence length189
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGCGTAGCGAAGCCGGCGACGACGAAGGAGGGATCCGCGAAGCAAGCAGCCATTGTGGTGGGTGTGCTTGCTTTAGGGTGGTTTGCCATCCAGGTTGCTTTTATACCTTTGTTCAACAAGGTTCGAGGTGGCGGTTCCGACAAAAAGGACGATGATGTCAACGCCTTTACACCGGATACTTAA

mRNA sequence

ATGGAGAGCGTAGCGAAGCCGGCGACGACGAAGGAGGGATCCGCGAAGCAAGCAGCCATTGTGGTGGGTGTGCTTGCTTTAGGGTGGTTTGCCATCCAGGTTGCTTTTATACCTTTGTTCAACAAGGTTCGAGGTGGCGGTTCCGACAAAAAGGACGATGATGTCAACGCCTTTACACCGGATACTTAA

Coding sequence (CDS)

ATGGAGAGCGTAGCGAAGCCGGCGACGACGAAGGAGGGATCCGCGAAGCAAGCAGCCATTGTGGTGGGTGTGCTTGCTTTAGGGTGGTTTGCCATCCAGGTTGCTTTTATACCTTTGTTCAACAAGGTTCGAGGTGGCGGTTCCGACAAAAAGGACGATGATGTCAACGCCTTTACACCGGATACTTAA

Protein sequence

MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTPDT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo18185Spo18185gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo18185.1Spo18185.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18185.1.exon.1Spo18185.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18185.1.CDS.1Spo18185.1.CDS.1CDS


Homology
[Close]
BLAST of Spo18185.1 vs. NCBI nr
Match: gi|129073|sp|P19407.1|OEC6_SPIOL (RecName: Full=6.7 kDa chloroplast outer envelope membrane protein; AltName: Full=E 6.7 [Spinacia oleracea])

HSP 1 Score: 123.6 bits (309), Expect = 1.200e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

		  

Query: 1  MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP 60
          MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP
Sbjct: 1  MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62
[Close]
BLAST of Spo18185.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWD8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_020720 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.200e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

		  

Query: 1  MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP 60
          MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP
Sbjct: 1  MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62
[Close]
BLAST of Spo18185.1 vs. ExPASy Swiss-Prot
Match: OEC6_SPIOL (6.7 kDa chloroplast outer envelope membrane protein OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 7.400e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

		  

Query: 1  MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP 60
          MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP
Sbjct: 1  MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62
The following BLAST results are available for this feature:
BLAST of Spo18185.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|129073|sp|P19407.1|OEC6_SPIOL1.2e-25100.RecName: Full=6.7 kDa chloropl... [more]
back to top
BLAST of Spo18185.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RWD8_SPIOL8.2e-26100.Uncharacterized protein OS=Spi... [more]
back to top
BLAST of Spo18185.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
OEC6_SPIOL7.4e-28100.6.7 kDa chloroplast outer enve... [more]
back to top
BLAST of Spo18185.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009707 chloroplast outer membrane
cellular_component GO:0016021 integral component of membrane