Spo18468.1 (mRNA)

Overview
NameSpo18468.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 32940838 .. 32941800 (+)
Sequence length496
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAATTTTTATTTTATTAAAAATTTAAAAAAATGGAAAAATTCCAAAGTCCTAGGCCTATATCAATGGTTCTACCATCTTACCTCTTTCCCCTTTTCCCTCCCTGTCCTCTCACACCCCCTTACAAATTTTTCTCTCTCTAACTCTTTCTCTCTCCTCCCCCCTTAATTGAAAAAACAAGCTTCTTCCTTAAGTTAAGTTTACCCTTAACCCTTAACCCTTAACCCTTAACCCACCCACCATGAATCACCAGAAACCAACACTATATGCGGGTAATCACCACATGAAACGCAGTCCATCTGAGCTTGCCCTGCACGCACTCGTCAATAATAATCCAACGGTTGTGGATCATCCTCATCATTCCCTCTTTTATGATCATGATCATACCGCCGGTTTTGTTGATCCAACGGCTGCCGTTGTTTCCGATCATCATCATCTTGATACTTTTGGATTTAAGAATAATAATAATCAGGTTTATTTCTCTCTCATCTCATCTCTTTTTTATTTTCTCTCTCCAAAAATCTTTCTCTTTCTCTCTCTCTCTCTCACTTTAGCTTTTGTTTTTGTTAATGTTCTCTAACGTTTTTTTGTTAGGCGTTTACGAGATATTTATAGTAGGTTTAGTAAGGTGTATGGGATATATGGTAGGTTGGCGGTGTACTCAATCATTTGCTACTCTAGTCCCGAGTGCTGTACTTTCTGCTTACTTCTTACACGTGCGTCTCACGTGTTCTTTTTTGTTTTTATTTTTTATATTTTTTATTTTTTTTGTCTTCTTTTTGCCTTTTACCGTTTTACGTTGTTGTTTTTTTTTTTTTTTTTTCTTCTTTTTTTTCTCTCTCTTGCTGTGGAATATAATAAATTACAGTACGATGTAATTTTAGCGGTCAAATTTTTACAACCTCGTAAATAGCATCTGTTTTTTTTTTTTTTTTGAAGGTATGTAGCATCTGTTTAATTTAA

mRNA sequence

TATAATTTTTATTTTATTAAAAATTTAAAAAAATGGAAAAATTCCAAAGTCCTAGGCCTATATCAATGGTTCTACCATCTTACCTCTTTCCCCTTTTCCCTCCCTGTCCTCTCACACCCCCTTACAAATTTTTCTCTCTCTAACTCTTTCTCTCTCCTCCCCCCTTAATTGAAAAAACAAGCTTCTTCCTTAAGTTAAGTTTACCCTTAACCCTTAACCCTTAACCCTTAACCCACCCACCATGAATCACCAGAAACCAACACTATATGCGGGTAATCACCACATGAAACGCAGTCCATCTGAGCTTGCCCTGCACGCACTCGTCAATAATAATCCAACGGTTGTGGATCATCCTCATCATTCCCTCTTTTATGATCATGATCATACCGCCGGTTTTGTTGATCCAACGGCTGCCGTTGTTTCCGATCATCATCATCTTGATACTTTTGGATTTAAGAATAATAATAATCAGGTATGTAGCATCTGTTTAATTTAA

Coding sequence (CDS)

ATGAATCACCAGAAACCAACACTATATGCGGGTAATCACCACATGAAACGCAGTCCATCTGAGCTTGCCCTGCACGCACTCGTCAATAATAATCCAACGGTTGTGGATCATCCTCATCATTCCCTCTTTTATGATCATGATCATACCGCCGGTTTTGTTGATCCAACGGCTGCCGTTGTTTCCGATCATCATCATCTTGATACTTTTGGATTTAAGAATAATAATAATCAGGTATGTAGCATCTGTTTAATTTAA

Protein sequence

MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVVSDHHHLDTFGFKNNNNQVCSICLI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo18468Spo18468gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo18468.1Spo18468.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18468.1.exon.1Spo18468.1.exon.1exon
Spo18468.1.exon.2Spo18468.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18468.1.utr5p.1Spo18468.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18468.1.CDS.1Spo18468.1.CDS.1CDS
Spo18468.1.CDS.2Spo18468.1.CDS.2CDS


Homology
[Close]
BLAST of Spo18468.1 vs. NCBI nr
Match: gi|902233324|gb|KNA22998.1| (hypothetical protein SOVF_028880 isoform A [Spinacia oleracea])

HSP 1 Score: 169.1 bits (427), Expect = 3.300e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

		  

Query: 1  MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV 60
          MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV
Sbjct: 1  MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV 60

Query: 61 SDHHHLDTFGFKNNNNQ 78
          SDHHHLDTFGFKNNNNQ
Sbjct: 61 SDHHHLDTFGFKNNNNQ 77
[Close]
BLAST of Spo18468.1 vs. NCBI nr
Match: gi|902233325|gb|KNA22999.1| (hypothetical protein SOVF_028880 isoform B [Spinacia oleracea])

HSP 1 Score: 169.1 bits (427), Expect = 3.300e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

		  

Query: 1  MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV 60
          MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV
Sbjct: 1  MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV 60

Query: 61 SDHHHLDTFGFKNNNNQ 78
          SDHHHLDTFGFKNNNNQ
Sbjct: 61 SDHHHLDTFGFKNNNNQ 77
[Close]
BLAST of Spo18468.1 vs. NCBI nr
Match: gi|731317993|ref|XP_010669482.1| (PREDICTED: basic leucine zipper 9 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 68.9 bits (167), Expect = 4.700e-9
Identity = 47/98 (47.96%), Postives = 55/98 (56.12%), Query Frame = 1 

		  

Query: 1   MNHQKPTLYA----GNHHMKRSPSELALHALVNNNPTVV-----------DHPHH-SLF- 60
           MNHQKP ++     GN+ MKRSPSEL L ALVNNNPT             DH HH +LF 
Sbjct: 5   MNHQKPAVFGPGPDGNNPMKRSPSELVLQALVNNNPTATIKSFHHDHDHDDHHHHPALFA 64

Query: 61  -YDHDHTAGFVDPTAAVVSDHHHLDTFGFKNNNNQVCS 81
            Y   H    + PTAAVVSD  H+   GFKN  + + S
Sbjct: 65  NYHDHHQQHLLHPTAAVVSD-DHIAFDGFKNQQDIINS 101
[Close]
BLAST of Spo18468.1 vs. NCBI nr
Match: gi|870866845|gb|KMT17764.1| (hypothetical protein BVRB_2g035120 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 68.6 bits (166), Expect = 6.100e-9
Identity = 46/93 (49.46%), Postives = 53/93 (56.99%), Query Frame = 1 

		  

Query: 1  MNHQKPTLYA----GNHHMKRSPSELALHALVNNNPTVV-----------DHPHH-SLF- 60
          MNHQKP ++     GN+ MKRSPSEL L ALVNNNPT             DH HH +LF 
Sbjct: 1  MNHQKPAVFGPGPDGNNPMKRSPSELVLQALVNNNPTATIKSFHHDHDHDDHHHHPALFA 60

Query: 61 -YDHDHTAGFVDPTAAVVSDHHHLDTFGFKNNN 76
           Y   H    + PTAAVVSD  H+   GFKN +
Sbjct: 61 NYHDHHQQHLLHPTAAVVSD-DHIAFDGFKNQD 92
[Close]
BLAST of Spo18468.1 vs. NCBI nr
Match: gi|731317995|ref|XP_010669483.1| (PREDICTED: basic leucine zipper 9 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 68.6 bits (166), Expect = 6.100e-9
Identity = 46/93 (49.46%), Postives = 53/93 (56.99%), Query Frame = 1 

		  

Query: 1  MNHQKPTLYA----GNHHMKRSPSELALHALVNNNPTVV-----------DHPHH-SLF- 60
          MNHQKP ++     GN+ MKRSPSEL L ALVNNNPT             DH HH +LF 
Sbjct: 5  MNHQKPAVFGPGPDGNNPMKRSPSELVLQALVNNNPTATIKSFHHDHDHDDHHHHPALFA 64

Query: 61 -YDHDHTAGFVDPTAAVVSDHHHLDTFGFKNNN 76
           Y   H    + PTAAVVSD  H+   GFKN +
Sbjct: 65 NYHDHHQQHLLHPTAAVVSD-DHIAFDGFKNQD 96
[Close]
BLAST of Spo18468.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVQ1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_028880 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.300e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

		  

Query: 1  MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV 60
          MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV
Sbjct: 1  MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV 60

Query: 61 SDHHHLDTFGFKNNNNQ 78
          SDHHHLDTFGFKNNNNQ
Sbjct: 61 SDHHHLDTFGFKNNNNQ 77
[Close]
BLAST of Spo18468.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RU60_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_028880 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.300e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

		  

Query: 1  MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV 60
          MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV
Sbjct: 1  MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV 60

Query: 61 SDHHHLDTFGFKNNNNQ 78
          SDHHHLDTFGFKNNNNQ
Sbjct: 61 SDHHHLDTFGFKNNNNQ 77
[Close]
BLAST of Spo18468.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D084_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g035120 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.300e-9
Identity = 46/93 (49.46%), Postives = 53/93 (56.99%), Query Frame = 1 

		  

Query: 1  MNHQKPTLYA----GNHHMKRSPSELALHALVNNNPTVV-----------DHPHH-SLF- 60
          MNHQKP ++     GN+ MKRSPSEL L ALVNNNPT             DH HH +LF 
Sbjct: 1  MNHQKPAVFGPGPDGNNPMKRSPSELVLQALVNNNPTATIKSFHHDHDHDDHHHHPALFA 60

Query: 61 -YDHDHTAGFVDPTAAVVSDHHHLDTFGFKNNN 76
           Y   H    + PTAAVVSD  H+   GFKN +
Sbjct: 61 NYHDHHQQHLLHPTAAVVSD-DHIAFDGFKNQD 92
The following BLAST results are available for this feature:
BLAST of Spo18468.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902233324|gb|KNA22998.1|3.3e-39100.hypothetical protein SOVF_0288... [more]
gi|902233325|gb|KNA22999.1|3.3e-39100.hypothetical protein SOVF_0288... [more]
gi|731317993|ref|XP_010669482.1|4.7e-947.9PREDICTED: basic leucine zippe... [more]
gi|870866845|gb|KMT17764.1|6.1e-949.4hypothetical protein BVRB_2g03... [more]
gi|731317995|ref|XP_010669483.1|6.1e-949.4PREDICTED: basic leucine zippe... [more]
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BLAST of Spo18468.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9RVQ1_SPIOL2.3e-39100.Uncharacterized protein OS=Spi... [more]
A0A0K9RU60_SPIOL2.3e-39100.Uncharacterized protein OS=Spi... [more]
A0A0J8D084_BETVU4.3e-949.4Uncharacterized protein OS=Bet... [more]
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BLAST of Spo18468.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo18468.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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