Spo18586.1 (mRNA)

Overview
NameSpo18586.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUbiquitin-protein ligase 1
LocationSpoScf_01661 : 70563 .. 73651 (+)
Sequence length838
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATTGCTCAAGAAGTTAAAGAATCTGCTGATGCTTCTTCCTCGGCACCTGCCAAACTGTGGTGGTGATACTCAGAAAATATTTGACAGTGCTGTCATATTTTCAAGGTTTGCTGACAAACACCGGTGATGCATTTATCAGTTAAAATCCAGAGTTGCTGGAAAATTTGGTGTCTATATATGATGTTGAAAGCACCTCGCCGTATATTATTTTGATAACAAAAGGGCATACTTTAGTTCTAGAATCAGACAACAGCATGAGCAACACCTTGCTGGGCCATCCAGATTCCAGAACAAGTGTTCGCGGGTGTATGTTTTTGAAGACTTGTATGAGGTCCAATCAGGATCTGAAGGGCGATTGTATAGTTTCAACTTTCAAGGTGAAGAGGAAATTGATGCTGGTGGCCACACACGAGAGTAGTACCAGTCATTGTCAAGGTTTATCATTGATAAGGGAGCACTACTATTCACCACAGCTGGTAATAATGCAATCTTCCAGCCAAACCCTAATACTGTCCACCGGACTGAACGACTAAGTACTTCAAATTTGTTGCTTGTGGTAATACTTCAAAAACAACCTACAGTTCCTGTTTTTATTTTGATTCTTGAATTTGTCGGTCTTCATTATATCACGCATTAAAAGAACTCCATAGGTAATGTTGCTTGTCCAAAGTTGGTTGATACCCTATTAGGTAACTTTTATGGTTGAACTTCTTTTATTTTTTAGGGTTCTTTTATTTGCTCACTTTATATTTCTGTTGGCTGTTGATTTTGCTGGAGATTTGACTAATTTTTTCGCCTAATAATTAATTTGGCCAACTGTAAGAAGCAGTTGAGTTACCCATTGGCCATCAGTAATTAGGTAAGATCTATACTTTTAATGGTTTATCTTCTCCTATTTTTCTCTCTATCTATTTTGCTTGATTTAGTTGCTTATTCTTTTATAACTCACAATATGGTCCTAGGTCCTTCACTGCAGCAACCTACGACAATTAATCATAATTTGGTGCGGATTTTGTGTTCATCGGATATCTTTAATTCTAGGGTTCTTTATTGCTTAATTACATGATTCAATTCCTTTTTATTCGTAAGTTTCATTTATCGTTTGTTTGCTTATTAGGTATATTTGAACATCACAAATTCACAACTTTGAAATGAAAATCTTTTGTTACGGTTTGAATATTATGTGTGAATGTATAGCGGGTTTATTGTTGCTGGTGTGGAGTGGGATCGGATTAACAGAGCAACGTCCTGATTTTTGTATATTAAAGTCAAGAATCTATCAAGTAGTTCTCATACTTGCGGTTTTATAGCTTGCTTGATTTGTCCATAGACTCATGTTTTTGAATGATGTTACTAACTGGCACGACCAAGCCACTATTATGTTTAAAGGGGGAATATGACTTTGCAAAAAGATTTGTGTATACTGTTTATTCTATAAGATAAATAATATGCAAATGTCTGTCAGTACATCAGTGCGTGGCCGCTAGACTAACCATCCACTCTTGGCATAGCTTTGTTTGTTTGCTTTGAGAAGGGTATGGTGCACCAAGGCATATGTAACCAAGGCCTTGATATATTTGTTACCGGGAATTCTTGAATGAGACTATTTCAAAATATTTAATGTGAATAAAAAGGAGTTGTAGGCAGAAGTCAAAATCATAAAAACTATTTCTTTGAAAAAGAGAAAATAAAGGTCACATATTTTGGGGAGAGGAATTGGGTGGGTGGATGGGAGGGATCCTATTCCTGCTAGAAAATGCTGCAATAAATTGTTCTCATTGCTTCTTATCAAATGTTCAGGCATTGTTTCTGCTTTGAGAGTGGTTTCACTAGGTCTTGTCTACAGTTTAGAGATTGAAGGCATTCTGGCCCTTTCCTGGTTGTTGTCTTTGCTGGTGTAATCCTGCGTTTAATTGCTCATCAAGATCTGGAGCAGTGGGGCTGTCAGGAGTTGCTGGAGACTCATGTTGTGGCCCTAAACCAACATATTGTTGCACCACTAGAACAGAGCTTGTTGCTGCAAAATCTGATGATGCTAACATGTCCCCAATTGCTCCAAGTTCAGGACATTCACTCCAATCTGTTAGACCGGCTGTAAGCGGTGATATCATGCCTTGTCCTCTTCCCACTATGTATAGATCGTGAACAGTTTCTATTGCTCTTATTGAAGCCACTGTTTCTTCCCCATTGTTTACAATTCTCTCCGTGTATGTGATTGATTCGCTGTTGGTTGTCTTCGATCTGAAGTCATTGATATATTCTTCATCCAGTTGCTTGTCTTGTTCGGCATCAGTTATCACAGTCAGCACTCGCGGGTCCCCAGGCTCACGACTTGGCTCCACGGTTGCTGCTCTAGAAGCATCATCACCTGGTATGAATCGCATTACAGTTACAGTGATGGTTGGATGTTCTGACATCCTCAATGCATATGCAAGTGCCTCCCTGTCATCAGGCCCACCAAAGAAGAGCACTGCTATGTTGTGTGACACCTGGTTTGCAGCCAAACGGGTCGACCCACTTAGCCCTCTATCAACAAGGATCCCAACCGAGCAAGGTGCGTTGGCTAATAAATTCTGGTTTATAGTTCTAAAAGCTGGATTTGTTGATTCCATTCCCCCATCCACAGTTTGTTGCTTATGGAAGGGGATAATAATAAAGGCCACTCGTTTTTCCTGTGCTAAATGACAAATATCTTCATGCATTGAGTTATAGGGAGAAATGGCTGTCAAAGGCTGAACCGAGACAGACCCAGTTAGAGCATGCTGCTCATAATTTTCAAAGGCATTGATGATATGATCTGATTGAGCTTGTGTTCTGTTGAGAGCTGGTCGACCTGACTTTCTGGTATTGTGCACTATGAGCATTGCTGATGCTCGCCCTGTTAGTTCTACTAAATGTAGCACGTACACACATATTGGGGATCTTCTGGTTGGGTGGCTGGCTTCCAGTAGATTTATTATGGTCGGCACATTCCTTGGTGTGTGAATGCAAGTCAATACTTTGAGTTCTGCGTCTGGTTTTGATTTCTGTATGGTTCTTCTCTTGTATGCTACAGATCTTCTTGCTGGCCGGTAAATAGCGGTG

mRNA sequence

ATGTTATTGCTCAAGAAGTTAAAGAATCTGCTGATGCTTCTTCCTCGGCACCTGCCAAACTGTGGTGGTGATACTCAGAAAATATTTGACAGTGCTGTCATATTTTCAAGGTTTATCATTGATAAGGGAGCACTACTATTCACCACAGCTGGTAATAATGCAATCTTCCAGCCAAACCCTAATACTGTCCACCGGACTGAACGACTAAGTACTTCAAATTTGTTGCTTGTGGCATTGTTTCTGCTTTGAGAGTGGTTTCACTAGGTCTTGTCTACAGTTTAGAGATTGAAGGCATTCTGGCCCTTTCCTGGTTGTTGTCTTTGCTGGTGTAATCCTGCGTTTAATTGCTCATCAAGATCTGGAGCAGTGGGGCTGTCAGGAGTTGCTGGAGACTCATGTTGTGGCCCTAAACCAACATATTGTTGCACCACTAGAACAGAGCTTGTTGCTGCAAAATCTGATGATGCTAACATGTCCCCAATTGCTCCAAGTTCAGGACATTCACTCCAATCTGTTAGACCGGCTTTGCTTGTCTTGTTCGGCATCAGTTATCACAGTCAGCACTCGCGGGTCCCCAGGCTCACGACTTGGCTCCACGGTTGCTGCTCTAGAAGCATCATCACCTGGTATGAATCGCATTACAGTTACAGTGATGGTTGGATGTTCTGACATCCTCAATGCATATGCAAGTGCCTCCCTGTCATCAGGCCCACCAAAGAAGAGCACTGCTATGTTGTGTGACACCTGGTTTGCAGCCAAACGGGTCGACCCACTTAGCCCTCTATCAACAAGGATCCCAACCGAGCAAGATCTTCTTGCTGGCCGGTAAATAGCGGTG

Coding sequence (CDS)

ATGTTATTGCTCAAGAAGTTAAAGAATCTGCTGATGCTTCTTCCTCGGCACCTGCCAAACTGTGGTGGTGATACTCAGAAAATATTTGACAGTGCTGTCATATTTTCAAGGTTTATCATTGATAAGGGAGCACTACTATTCACCACAGCTGGTAATAATGCAATCTTCCAGCCAAACCCTAATACTGTCCACCGGACTGAACGACTAAGTACTTCAAATTTGTTGCTTGTGGCATTGTTTCTGCTTTGA

Protein sequence

MLLLKKLKNLLMLLPRHLPNCGGDTQKIFDSAVIFSRFIIDKGALLFTTAGNNAIFQPNPNTVHRTERLSTSNLLLVALFLL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo18586Spo18586gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo18586.1Spo18586.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18586.1.exon.1Spo18586.1.exon.1exon
Spo18586.1.exon.2Spo18586.1.exon.2exon
Spo18586.1.exon.3Spo18586.1.exon.3exon
Spo18586.1.exon.4Spo18586.1.exon.4exon
Spo18586.1.exon.5Spo18586.1.exon.5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18586.1.CDS.1Spo18586.1.CDS.1CDS
Spo18586.1.CDS.2Spo18586.1.CDS.2CDS
Spo18586.1.CDS.3Spo18586.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18586.1.utr3p.1Spo18586.1.utr3p.1three_prime_UTR
Spo18586.1.utr3p.2Spo18586.1.utr3p.2three_prime_UTR
Spo18586.1.utr3p.3Spo18586.1.utr3p.3three_prime_UTR


Homology
[Close]
BLAST of Spo18586.1 vs. NCBI nr
Match: gi|902143452|gb|KNA04848.1| (hypothetical protein SOVF_195800 [Spinacia oleracea])

HSP 1 Score: 82.0 bits (201), Expect = 5.200e-13
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = 1 

		  

Query: 1   MLLLKKLKNLLMLLPRHLPNCGGDTQKIFDSAVIFSRFIIDKGALLFTTAGNNAIFQPNP 60
           MLLLKKLKNLLMLLPRHLPNCGGDTQKIFDSAVIFSR   +K  LL   +    +     
Sbjct: 78  MLLLKKLKNLLMLLPRHLPNCGGDTQKIFDSAVIFSRMEEEKSILLKLNSSPEPLCLALS 137

Query: 61  NTVHRTE 68
           N + R E
Sbjct: 138 NRISRAE 144
[Close]
BLAST of Spo18586.1 vs. NCBI nr
Match: gi|743810981|ref|XP_010929052.1| (PREDICTED: E3 ubiquitin-protein ligase UPL1-like isoform X2 [Elaeis guineensis])

HSP 1 Score: 62.8 bits (151), Expect = 3.300e-7
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 

		  

Query: 20   NCGGDTQKIFDSAVIFSRFIIDKGALLFTTAGNNAIFQPNPNTVHRTERLS 71
            + GG T++ +    + SR I DKGALLFTT GNNA FQPNPN+V++TE LS
Sbjct: 3453 DAGGLTREWYQ---VLSRVIFDKGALLFTTVGNNATFQPNPNSVYQTEHLS 3500
[Close]
BLAST of Spo18586.1 vs. NCBI nr
Match: gi|672119710|ref|XP_008783103.1| (PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Phoenix dactylifera])

HSP 1 Score: 62.8 bits (151), Expect = 3.300e-7
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 

		  

Query: 20   NCGGDTQKIFDSAVIFSRFIIDKGALLFTTAGNNAIFQPNPNTVHRTERLS 71
            + GG T++ +    + SR I DKGALLFTT GNNA FQPNPN+V++TE LS
Sbjct: 3431 DAGGLTREWYQ---VLSRVIFDKGALLFTTVGNNAAFQPNPNSVYQTEHLS 3478
[Close]
BLAST of Spo18586.1 vs. NCBI nr
Match: gi|743810987|ref|XP_010929053.1| (PREDICTED: E3 ubiquitin-protein ligase UPL1-like isoform X3 [Elaeis guineensis])

HSP 1 Score: 62.8 bits (151), Expect = 3.300e-7
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 

		  

Query: 20   NCGGDTQKIFDSAVIFSRFIIDKGALLFTTAGNNAIFQPNPNTVHRTERLS 71
            + GG T++ +    + SR I DKGALLFTT GNNA FQPNPN+V++TE LS
Sbjct: 3454 DAGGLTREWYQ---VLSRVIFDKGALLFTTVGNNATFQPNPNSVYQTEHLS 3501
[Close]
BLAST of Spo18586.1 vs. NCBI nr
Match: gi|743810977|ref|XP_010929051.1| (PREDICTED: E3 ubiquitin-protein ligase UPL1-like isoform X1 [Elaeis guineensis])

HSP 1 Score: 62.8 bits (151), Expect = 3.300e-7
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 

		  

Query: 20   NCGGDTQKIFDSAVIFSRFIIDKGALLFTTAGNNAIFQPNPNTVHRTERLS 71
            + GG T++ +    + SR I DKGALLFTT GNNA FQPNPN+V++TE LS
Sbjct: 3454 DAGGLTREWYQ---VLSRVIFDKGALLFTTVGNNATFQPNPNSVYQTEHLS 3501
[Close]
BLAST of Spo18586.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDT1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_195800 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.600e-13
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = 1 

		  

Query: 1   MLLLKKLKNLLMLLPRHLPNCGGDTQKIFDSAVIFSRFIIDKGALLFTTAGNNAIFQPNP 60
           MLLLKKLKNLLMLLPRHLPNCGGDTQKIFDSAVIFSR   +K  LL   +    +     
Sbjct: 78  MLLLKKLKNLLMLLPRHLPNCGGDTQKIFDSAVIFSRMEEEKSILLKLNSSPEPLCLALS 137

Query: 61  NTVHRTE 68
           N + R E
Sbjct: 138 NRISRAE 144
[Close]
BLAST of Spo18586.1 vs. UniProtKB/TrEMBL
Match: S8EC74_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_04584 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.000e-7
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 

		  

Query: 20   NCGGDTQKIFDSAVIFSRFIIDKGALLFTTAGNNAIFQPNPNTVHRTERLS 71
            + GG T++ +    + SR I DKGALLFTT GNNA FQPNPN+V++TE LS
Sbjct: 3403 DAGGLTREWYQ---LLSRVIFDKGALLFTTVGNNATFQPNPNSVYQTEHLS 3450
[Close]
BLAST of Spo18586.1 vs. UniProtKB/TrEMBL
Match: A0A0E0IGZ1_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.000e-7
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 

		  

Query: 20   NCGGDTQKIFDSAVIFSRFIIDKGALLFTTAGNNAIFQPNPNTVHRTERLS 71
            + GG T++ +    + SR I DKGALLFTT GNNA FQPNPN+V++TE LS
Sbjct: 2570 DAGGLTREWYQ---LLSRVIFDKGALLFTTVGNNATFQPNPNSVYQTEHLS 2617
[Close]
BLAST of Spo18586.1 vs. UniProtKB/TrEMBL
Match: A0A162A1S8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_017075 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.000e-7
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 

		  

Query: 20   NCGGDTQKIFDSAVIFSRFIIDKGALLFTTAGNNAIFQPNPNTVHRTERLS 71
            + GG T++ +    + SR I DKGALLFTT GNNA FQPNPN+V++TE LS
Sbjct: 3453 DAGGLTREWYQ---LLSRVIFDKGALLFTTGGNNATFQPNPNSVYQTEHLS 3500
[Close]
BLAST of Spo18586.1 vs. UniProtKB/TrEMBL
Match: A0A0E0EFS2_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.000e-7
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 

		  

Query: 20  NCGGDTQKIFDSAVIFSRFIIDKGALLFTTAGNNAIFQPNPNTVHRTERLS 71
           + GG T++ +    + SR I DKGALLFTT GNNA FQPNPN+V++TE LS
Sbjct: 554 DAGGLTREWYQ---LLSRVIFDKGALLFTTVGNNATFQPNPNSVYQTEHLS 601
[Close]
BLAST of Spo18586.1 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 60.5 bits (145), Expect = 1.000e-8
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 

		  

Query: 20   NCGGDTQKIFDSAVIFSRFIIDKGALLFTTAGNNAIFQPNPNTVHRTERLS 71
            + GG T++ +    + SR I DKGALLFTT GN+A FQPNPN+V++TE LS
Sbjct: 3359 DAGGLTREWYQ---LLSRVIFDKGALLFTTVGNDATFQPNPNSVYQTEHLS 3406
[Close]
BLAST of Spo18586.1 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=3)

HSP 1 Score: 60.5 bits (145), Expect = 1.000e-8
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 

		  

Query: 20   NCGGDTQKIFDSAVIFSRFIIDKGALLFTTAGNNAIFQPNPNTVHRTERLS 71
            + GG T++ +    + SR I DKGALLFTT GN+A FQPNPN+V++TE LS
Sbjct: 3336 DAGGLTREWYQ---LLSRVIFDKGALLFTTVGNDATFQPNPNSVYQTEHLS 3383
[Close]
BLAST of Spo18586.1 vs. TAIR (Arabidopsis)
Match: AT1G55860.1 (ubiquitin-protein ligase 1)

HSP 1 Score: 60.5 bits (145), Expect = 5.700e-10
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 

		  

Query: 20   NCGGDTQKIFDSAVIFSRFIIDKGALLFTTAGNNAIFQPNPNTVHRTERLS 71
            + GG T++ +    + SR I DKGALLFTT GN+A FQPNPN+V++TE LS
Sbjct: 3608 DAGGLTREWYQ---LLSRVIFDKGALLFTTVGNDATFQPNPNSVYQTEHLS 3655
[Close]
BLAST of Spo18586.1 vs. TAIR (Arabidopsis)
Match: AT1G70320.1 (ubiquitin-protein ligase 2)

HSP 1 Score: 60.5 bits (145), Expect = 5.700e-10
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 

		  

Query: 20   NCGGDTQKIFDSAVIFSRFIIDKGALLFTTAGNNAIFQPNPNTVHRTERLS 71
            + GG T++ +    + SR I DKGALLFTT GN+A FQPNPN+V++TE LS
Sbjct: 3336 DAGGLTREWYQ---LLSRVIFDKGALLFTTVGNDATFQPNPNSVYQTEHLS 3383
The following BLAST results are available for this feature:
BLAST of Spo18586.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902143452|gb|KNA04848.1|5.2e-1364.1hypothetical protein SOVF_1958... [more]
gi|743810981|ref|XP_010929052.1|3.3e-758.8PREDICTED: E3 ubiquitin-protei... [more]
gi|672119710|ref|XP_008783103.1|3.3e-758.8PREDICTED: E3 ubiquitin-protei... [more]
gi|743810987|ref|XP_010929053.1|3.3e-758.8PREDICTED: E3 ubiquitin-protei... [more]
gi|743810977|ref|XP_010929051.1|3.3e-758.8PREDICTED: E3 ubiquitin-protei... [more]
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BLAST of Spo18586.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QDT1_SPIOL3.6e-1364.1Uncharacterized protein OS=Spi... [more]
S8EC74_9LAMI3.0e-758.8Uncharacterized protein OS=Gen... [more]
A0A0E0IGZ1_ORYNI3.0e-758.8Uncharacterized protein OS=Ory... [more]
A0A162A1S8_DAUCA3.0e-758.8Uncharacterized protein OS=Dau... [more]
A0A0E0EFS2_9ORYZ3.0e-758.8Uncharacterized protein OS=Ory... [more]
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BLAST of Spo18586.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UPL1_ARATH1.0e-856.8E3 ubiquitin-protein ligase UP... [more]
UPL2_ARATH1.0e-856.8E3 ubiquitin-protein ligase UP... [more]
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BLAST of Spo18586.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G55860.15.7e-1056.8ubiquitin-protein ligase 1[more]
AT1G70320.15.7e-1056.8ubiquitin-protein ligase 2[more]
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GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity