Spo18740.1 (mRNA) | SpinachBase

Overview


Name	Spo18740.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Polynucleotidyl transferase isoform 1
Location	chr6 : 34354856 .. 34361194 (-)
Sequence length	780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAGTTTAGATCAGTATACTCATATTTACAAATTGAAAACCTCTCTTCTCTCTACTCTCTTCTCTCTCTTCGAATCCTAAGACTCCCAACTCTGTCGCCCTAAGCAGCCGAGTAGATTGACGTCTTGTCGTTGCCCGATTGAAGGAGAAGCTGCTCCGGTGGCACTGGAAACAACTCAACATCTCTAATCCCATTGGTTCTCGATTTCAGGTGCTTAATTTCTTTTTAAATTGAACTTAAAATAGTTACTAGTTAGTAGTTAGGGTTCTTCACTTATTTCCTTGTAAAATTGAATTTAAAATAGGTTTGCATTTACTTTGTTAAATGTTGTTAGATTGGTAATTGACAGTTTATGATCAGATTACTCACCTAGTTCATTTGTCATTTGTAGATTAGAACTCTATTTAGTATTTACCTTATTGATTTTATTATGTTGATGGTTCATGATTTATGAATTCGTATTTGGTAGTACCGTAGTTGAATACAGACTAAGATTAGTATTTTGGGCTACCGCATGAAACTACATTCTACTAATCTATTATTGTTCCTCATTACAAACTCCTTGCATTACCAATTGAGGTTGGCATTAGTGGTTAAGGACCTCTTGCTCGGGTTCGAGCCTTGTGAATGGAAAAAATCTCAACAGGGAGGGATGTTGCCCATCGAGGTACCATGCAAACTCCCACAGGAGATTACATCGCCGACGGCGGTGGGAACTCCTCGTAGTAGAACCAAAAAAACAATTTCACAAACAATTGAGTCAACTTCAGATCGTAGTAGAACCAAAAAAACAATTTCACAAACAATTGAGTCAACTTCAGATTATATAAGTTTAAATTAAAGAAAAAAATATCATTTTACCTAAGATAACTTTAAATAAATTTAGAAAAAATAAGTTGAACCAAACATTTCATCCACTTCCTTTCCAAAAAGAAAAAGAAAAAAACAAAAAAAAGGCCATATCGGTCACAACCCAAGCCCAGAGACGAAACCCGATTGATTCAAAGACACCGGTAATTCTTTTTCTTCTTTCTTCCTCCTTTCGTTTCCAGTAGAAACCACCTTCTCAGAATTCTAACGCGAAATTTTAGTAACCTGGTAGGAGATCAATGGTGGGTTTACATTCAATTTTCTCTTTGTCAACTTTAGTTGATTTATGATAATTTCATCTTAAATTCGTAAGTGTCTTCTGCCATTATGTTTTTGATTTCCTGAACTATATGAAGACGAAATTTCATGAGTATGGATTAATTAGTAGCAAAAGATTTCTTTAACCAGTTTTCTCGCCTAAAAACAATTGAAGATTTCACAGAATTGTAAAGTGCTAGATTTTGTATCAAATGTGCATACCAACTGTTTGATAAAATGCCCCAATGAACTAGTGCTGTATTTTCCTCTATAATATCTACTGATACTTATTATTACTTGTGAGTGTACTGATTCTTTGCTAAATGGGTTGCAGTGATAATGAGGTATGTGAAACCACTATGCTTGTTTCAAGATTTGGTTAAGACGACAAATGCACTCGAACGAGGTCGATTTTTGGGCTTAGATGTTGGTGGTAAATACGTCGGACTTGCAGTTTCAGACCCAGATAACAAAATTGCAATACCTGTAAGGTAAATTTTGCAATCTATGCATTGCAAAGGAAATTCCAACTTGAGTACTTTTAGTAATGTTGAAATAAGCATGGTTTTGATGGCTTGTAAATTTTGTTTCTCCTGAATGAAAGTTTGCAGCATTTGACAGTTATGCAGTCCATACTCGAACTTAGTCTTGTAGTCGATACTTATTTATCTTCGTATGTTGTACTTCTGTTCTGGAATTTTACATGAACCTGTTGTTACCTTGCAGTGTTTTACTCCGAAAGAAATCCAATATTAACATGATGGCTGCTGATTTCACAAGTTTGGTAAATTTGTCTCATCTTTATACCTTCCTATACAGGGCTTTGTTCAGACATTTCAGTTTGATTATGATTGTTATTTTCTTATGTCTACTTACAATGGAACTGTACTATTTTTAATTCTAACAATTCTTTCTTCTTACTTGTAGATATCAGAGTTTTCTCTATCAGGCTTTGTTGTTGGTTGCCCTTTCGATAGACAGCGTCCAAGTGCAGATGTATGTTCTCCTAATGGTCGTGGAATATATGAGTTGTTAACACTTTTTGTTTAATGCTTTTCCACTGTGTTGATCAGGCTGCGCAAGTGAAAGTTTTTGTAGATGATCTGTGCAACACTGGGAAACTAGAAGGTGTGAAATATACATATTGGAACGAGTGCTATACGTCAAAGGTAACTAATATCCAATAGATTCTTCCTCGGTAGAAATCATTCCTCAAAAGTGTAATACCTCTTTTATTGATGATTTTATTTGGGGTTTCAGAATGTCGACTTACTTTTGAAGCCACTGTCGTTACATCCAGTGGAATTAAAAACTATGCTTGACAAATTTGCCGCCGTGGGAATTTTGCAGGTAAGAGTTGCGAAATGCTTGAGCCTATCCATATTCTTGATGTTGTCCAAATTGTTTATAGGTTTAACTGTGAAACCAATTAGAACACGTGTAACATATGCATTGAAATATTTATCTGAGAATACCCTATTATTGGAACAGGGGTATCTGGATTATGTCAACCGGTGTGGCGTGAATCCTGATGTCAAAGATCATGCTGGGAACAGTTGAGTAGCTCTTTCTCCATTGTGTGCTGATATGTTGTCAAATTGTTGTACGTTTGCATAGGGATGTTTCATGTTTAGCTCTTGGATTTCCCTCTGCGTTGTGTTTTAACTTGTATGAAAAACATTAACCGGATGAGCTAACATTGCTATGTTATATGGCCTTTTCCATACAACAATTCAATCTCTAACTTGGGGCAATATGTCTAAGCTCTGTTTCATTTGAATGCAATACTCGAGGACTGGAAAGTGAATACATAGAGCAATATGTCTAGCTCTTCAAAACATTTTTCTCAGAAAATTGTTTCTGGGAACTGGTTTGAACATATGGTAGGGTAGGTAGACTTGGGGTGAACATAACTGTAGGCTAAATGGTAGCTAGAGAAACTTAACCAGAACAGTGAACTAAATCCCCTATAACAAGAACCAAAACAAACCTCCATTTCATCGACATTAGCGTTTATCATACCTTCTTGAGCGAAGAACACTGAACTAAATCCCCTATAACAGGGAATTTAATGTAATGAAGACAGTAGGATGCCACGAATATTCAACATATATAGTCTTTGCCATTGGACCAACACCTCATATTTGAACAAAATCTCAATACAAAATCATAAACATGTGCTTGCTGCCTCAAGCCACATAGATGGTGTAAGTTTTATATAACGTAAAGCATTCGATAGCTGGGGATTTTACAGATAGATGATAAATGTGACGGAAGCATAAAAAGCAATGTGAATACGGTGGTCACAAGCCGAACTCTAACATGACTCGTTTCAACCAACTCAAACCGAGTTCGAACTTGAACTCGCCTCAATCTTTAAAATCTTTATCAAGCTATCAAGCTAGGTTTTATAAGTATTTTTTGAGTTCGAGTGAAACTTCAAGCCTTTTTCAAGCCTGCACAACTGCACACGATAAAAAGTACGGAGTATATGCTGATAATAAACGGAACAATATATTAAAAAGTTTCTTAATCAATACTAAATTAAAAGATTATTGGAAAATTTATGTAAAAAGTTCGACATTAGGCATTACGGAGTAGTATAATTATTCTTAATCAACATGTATTATTTTTAACGGGCGCTTTCGAGCTGAATAACAATTTGAGTTTGGTTCATTTAGTTACCAAACAATAAATTCAAGCTTAAGCTTGATTCATTAACAAACGAATCGAGCCGGATCTAAATAATCAGGACACATGAGGACATGAATTGGTGTAAATTCACTTGAACATATAAATTAATAACTTAAAAAAGAAGAAGCATAAATCATATTTTTTTTTTGACAACTAACTACACAATCATAAGCTTAGTACCTCAAGGCTCAAGCCACATAAATGGTGTAGATTTACTATAATGAAATGGACCATCATAATAGCTATGAATATGATTGCCTGCTAAACTGTAAACACCCATGTCCTTACCCCTGCTATTTGATTCATACATATGTCTATGGCGATCCGCCTTAAAATCATCTGTAAAATAAATGGAGTTAGGTTTAAAGACTTTATCAACAGAGACATTAACGGAATAAGAAGAGTTTGAACCCACGAAAATTGCTATATCCTCCAAGTGAACTACTCTGTCAGCCGTCCCATTGTGAATATTTAGCTCAAATACCTCGAATGACATGGTTCGATAGATTTGATCACACAATCTTTTCCGTCTACAAACAAGCAATAATCGATCCGAAGATTCAACCAAGTAGTTAATTGTAAGTCCATGAGCTGCTTCCCTTTCCTTGATCAATCGGCCATGAGGTTCACCCGATTGGTCGAATTCAAAGCAACACTAGTGGAAAAACAATCATTTGCATCACCACATTTGCCTCGCACATTTAAACATGTGACGCAATTGACAGTTCTAAGCTTTAAAATTAGTCATTTGCGTCGCAGAATTATTAATCTGCGACGCAAATGACTCTAAAATGTTCTCAGAGTCATTTGCGTCGCAGATTAGTAATAATGCGACGCAAAATATTACCTCCTTTGCGTCGCAGAATTACTAATCTGCGACGCAAATGACTCTTTAAGTCACCTGCGTCGCAGATTAGTAATTCTGCGACGCAGAGGAGGTAAAAAAAATTCGGAAGTTTTTAATTATTCCTCACCCACGCGTACTGCACCCTAATTTGTCGAAGAACAAAACAAACAGGCGCAGCTACCTTCACGACTTCACCCTCATCCTCCATCGATCTTCGATCTTCTTCACCCTCATCCTCCATCGATCTTCTTCACCCTACACCAGGCGCAGCTACATTTAGAGAGAGTTTCGCTGGAACCGTAGGCCACAGCCGCCGCCGCCGCCGCCTCCATTGGAGAATGCCCACTGAATAGGAATCGATCCCTGTCTCCATCAGGTACACTTACTTACCCTCAATTTCCATCTTCTTCACCCTAATTCTTCAATTGATTCCCTTATTTACTCAATCAGGTACACTTTCATTGAATTTTGTGGTTACTTTTTTGTTTAATTTGAAAGATTTAGGGTTTCTTTTTTTGGGTTTGGGATTTGGTGAGAAATTACGTGAATTAGGTCACTAATTTCCAATAATTTAGAACAATGAGGGGGTGAGTGTGCGTAATATTTTGCTAGGGATTATGAATTTGTTTTTGTTAATTTTGCGCAGATTTTTTTTGTTCTGACATTGTGTTCATTTGAATGTTCTGTTGCAGTGGTTTGGCTGAATTGAGTCTCGTTTGGGAGTAAGAAGATTTACTCCGATGGTAAGTTTCATTCCTCATGTTTCCAAAATGTATGAGACTATAGTAAGACTTTGAATTATTGTTGTTTGTTCTTGATTAAGCTATACATTTTGGCTTGCAAATGTTAATCAGCTTGAAGTTGTATGAATTCAGATAGAAGTTTGTATCTTTCTTCTTTACTTACTGACTTTGAATAACTCTCTTTGTTTCCTTTTTTTCTTCTTCTTAATTTTAGTTTTCATCCGAAATTTGCATTGTTTGTTTTAGAATGATTGATTGTTGTGATATATTGTGATTTCTTTGCTAGATTTTTTAATCTTTCCCCCCTTAATTTCCTGGTATATTTCTTGTTGATTTCATAGATGTTTTTATTGATTTGGATTGGTTAGTTAGTGTTATAGTTGAGAATAATGGTTGGTTATTGATCTGGTTAGCGCTTTTAGAGTTTTGTTGGAAAGTTGAGAATTTTTGGTTTAATTTCTGAAGTAGACTAGAAATGTGTCATGAGGAAGGGGAATAAGGTGCAGTGATATACAATGTCCTCTTAATAATATCAGTTAATGGCGACCAATTTGACCATAGACTGGTCGTTCCAGACTCCAGAACGAACTTGCTTAAAGTTATAGTAAAAAGCCTAGAACATCAGTTAGGACAGATTTGTGGCTTAGTGTCGCACGAACGCTGTAAATTCATAATTTAGTGTGCTTCAATTTTAATTTCTCGGCTTTTTTTTTCTCGGTTCAAATTTTTATTTTTATTTCATATTGTAATTTGTTTGATTTTGGTCTGACAATGGAGTTTTTTTATGTAACAGGCGAATATGCCGGAGAAATTGAACCAGTGTAAGCTTGATGCTCGCCGTGAACAATGCCTTTCGCAAGGTCCTGCATTCATTTTCTTTTCTTTTTTTGATTTTTACAGTTGTGTATTTTTCTTGCATAAATTAA

mRNA sequence

ATAAGTTTAGATCAGTATACTCATATTTACAAATTGAAAACCTCTCTTCTCTCTACTCTCTTCTCTCTCTTCGAATCCTAAGACTCCCAACTCTGTCGCCCTAAGCAGCCGAGTAGATTGACGTCTTGTCGTTGCCCGATTGAAGGAGAAGCTGCTCCGGTGGCACTGGAAACAACTCAACATCTCTAATCCCATTGGTTCTCGATTTCAGTGATAATGAGGTATGTGAAACCACTATGCTTGTTTCAAGATTTGGTTAAGACGACAAATGCACTCGAACGAGGTCGATTTTTGGGCTTAGATGTTGGTGGTAAATACGTCGGACTTGCAGTTTCAGACCCAGATAACAAAATTGCAATACCTGTAAGTGTTTTACTCCGAAAGAAATCCAATATTAACATGATGGCTGCTGATTTCACAAGTTTGATATCAGAGTTTTCTCTATCAGGCTTTGTTGTTGGTTGCCCTTTCGATAGACAGCGTCCAAGTGCAGATGCTGCGCAAGTGAAAGTTTTTGTAGATGATCTGTGCAACACTGGGAAACTAGAAGGTGTGAAATATACATATTGGAACGAGTGCTATACGTCAAAGAATGTCGACTTACTTTTGAAGCCACTGTCGTTACATCCAGTGGAATTAAAAACTATGCTTGACAAATTTGCCGCCGTGGGAATTTTGCAGGCCACAGCCGCCGCCGCCGCCGCCTCCATTGGAGAATGCCCACTGAATAGGAATCGATCCCTGTCTCCATCAGTTGTGTATTTTTCTTGCATAAATTAA

Coding sequence (CDS)

ATGAGGTATGTGAAACCACTATGCTTGTTTCAAGATTTGGTTAAGACGACAAATGCACTCGAACGAGGTCGATTTTTGGGCTTAGATGTTGGTGGTAAATACGTCGGACTTGCAGTTTCAGACCCAGATAACAAAATTGCAATACCTGTAAGTGTTTTACTCCGAAAGAAATCCAATATTAACATGATGGCTGCTGATTTCACAAGTTTGATATCAGAGTTTTCTCTATCAGGCTTTGTTGTTGGTTGCCCTTTCGATAGACAGCGTCCAAGTGCAGATGCTGCGCAAGTGAAAGTTTTTGTAGATGATCTGTGCAACACTGGGAAACTAGAAGGTGTGAAATATACATATTGGAACGAGTGCTATACGTCAAAGAATGTCGACTTACTTTTGAAGCCACTGTCGTTACATCCAGTGGAATTAAAAACTATGCTTGACAAATTTGCCGCCGTGGGAATTTTGCAGGCCACAGCCGCCGCCGCCGCCGCCTCCATTGGAGAATGCCCACTGAATAGGAATCGATCCCTGTCTCCATCAGTTGTGTATTTTTCTTGCATAAATTAA

Protein sequence

MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNINMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNECYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQATAAAAAASIGECPLNRNRSLSPSVVYFSCIN

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo18740	Spo18740	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo18740.1	Spo18740.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18740.1.utr5p.2	Spo18740.1.utr5p.2	five_prime_UTR
Spo18740.1.utr5p.1	Spo18740.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18740.1.CDS.7	Spo18740.1.CDS.7	CDS
Spo18740.1.CDS.6	Spo18740.1.CDS.6	CDS
Spo18740.1.CDS.5	Spo18740.1.CDS.5	CDS
Spo18740.1.CDS.4	Spo18740.1.CDS.4	CDS
Spo18740.1.CDS.3	Spo18740.1.CDS.3	CDS
Spo18740.1.CDS.2	Spo18740.1.CDS.2	CDS
Spo18740.1.CDS.1	Spo18740.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18740.1.exon.8	Spo18740.1.exon.8	exon
Spo18740.1.exon.7	Spo18740.1.exon.7	exon
Spo18740.1.exon.6	Spo18740.1.exon.6	exon
Spo18740.1.exon.5	Spo18740.1.exon.5	exon
Spo18740.1.exon.4	Spo18740.1.exon.4	exon
Spo18740.1.exon.3	Spo18740.1.exon.3	exon
Spo18740.1.exon.2	Spo18740.1.exon.2	exon
Spo18740.1.exon.1	Spo18740.1.exon.1	exon

Homology

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BLAST of Spo18740.1 vs. NCBI nr
Match: gi|902148557|gb|KNA05257.1| (hypothetical protein SOVF_192110 isoform B [Spinacia oleracea])

HSP 1 Score: 314.3 bits (804), Expect = 1.400e-82
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1

		  
Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI
Sbjct: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE
Sbjct: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ
Sbjct: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 155

[Close]

BLAST of Spo18740.1 vs. NCBI nr
Match: gi|902148556|gb|KNA05256.1| (hypothetical protein SOVF_192110 isoform A [Spinacia oleracea])

HSP 1 Score: 314.3 bits (804), Expect = 1.400e-82
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1

		  
Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI
Sbjct: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE
Sbjct: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ
Sbjct: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 155

[Close]

BLAST of Spo18740.1 vs. NCBI nr
Match: gi|731341874|ref|XP_010682115.1| (PREDICTED: uncharacterized protein LOC104897013 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 266.5 bits (680), Expect = 3.400e-68
Identity = 131/155 (84.52%), Postives = 144/155 (92.90%), Query Frame = 1

		  
Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           M+++KPL LFQDL+KT NALERGR LGLDVG KYVGLA+SDP+NKIA P+SVLLRKK NI
Sbjct: 1   MKHMKPLSLFQDLLKT-NALERGRLLGLDVGDKYVGLALSDPENKIATPLSVLLRKKFNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           +MMAADFTSLISEFSLSGF+VGCP+DR RPS  A QVKVFVDDLC TGKLEGVKYTYWNE
Sbjct: 61  DMMAADFTSLISEFSLSGFIVGCPYDRLRPSPHAVQVKVFVDDLCKTGKLEGVKYTYWNE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           C+TSKNV+LLLKPL+LHPVELKTMLDKFAAVGILQ
Sbjct: 121 CFTSKNVELLLKPLTLHPVELKTMLDKFAAVGILQ 154

[Close]

BLAST of Spo18740.1 vs. NCBI nr
Match: gi|870856210|gb|KMT07887.1| (hypothetical protein BVRB_6g145830 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 266.5 bits (680), Expect = 3.400e-68
Identity = 131/155 (84.52%), Postives = 144/155 (92.90%), Query Frame = 1

		  
Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           M+++KPL LFQDL+KT NALERGR LGLDVG KYVGLA+SDP+NKIA P+SVLLRKK NI
Sbjct: 163 MKHMKPLSLFQDLLKT-NALERGRLLGLDVGDKYVGLALSDPENKIATPLSVLLRKKFNI 222

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           +MMAADFTSLISEFSLSGF+VGCP+DR RPS  A QVKVFVDDLC TGKLEGVKYTYWNE
Sbjct: 223 DMMAADFTSLISEFSLSGFIVGCPYDRLRPSPHAVQVKVFVDDLCKTGKLEGVKYTYWNE 282

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           C+TSKNV+LLLKPL+LHPVELKTMLDKFAAVGILQ
Sbjct: 283 CFTSKNVELLLKPLTLHPVELKTMLDKFAAVGILQ 316

[Close]

BLAST of Spo18740.1 vs. NCBI nr
Match: gi|224053911|ref|XP_002298037.1| (hypothetical protein POPTR_0001s09310g [Populus trichocarpa])

HSP 1 Score: 234.6 bits (597), Expect = 1.400e-58
Identity = 114/155 (73.55%), Postives = 135/155 (87.10%), Query Frame = 1

		  
Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           M+YV+PL LF +L+KT+ A+ +GRFLGLDVG KYVGLAVSDP NKIA P+SVLLRKKSNI
Sbjct: 1   MKYVRPLSLFHELLKTS-AINQGRFLGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
            +MA DF SLISE SL GF+VG PFDRQR + DA +VK+FVDDLC TGKLEGVK+TYW+E
Sbjct: 61  ELMATDFQSLISELSLGGFIVGYPFDRQRGAPDAVRVKLFVDDLCKTGKLEGVKFTYWDE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           C+TSKNV+LL+KPL LHPV  K+++DKFAAVGILQ
Sbjct: 121 CFTSKNVELLVKPLDLHPVHAKSIMDKFAAVGILQ 154

[Close]

BLAST of Spo18740.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDB2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_192110 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 9.900e-83
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1

		  
Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI
Sbjct: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE
Sbjct: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ
Sbjct: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 155

[Close]

BLAST of Spo18740.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFD2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_192110 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 9.900e-83
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1

		  
Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI
Sbjct: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE
Sbjct: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ
Sbjct: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 155

[Close]

BLAST of Spo18740.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C2Z4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g145830 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.400e-68
Identity = 131/155 (84.52%), Postives = 144/155 (92.90%), Query Frame = 1

		  
Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           M+++KPL LFQDL+KT NALERGR LGLDVG KYVGLA+SDP+NKIA P+SVLLRKK NI
Sbjct: 163 MKHMKPLSLFQDLLKT-NALERGRLLGLDVGDKYVGLALSDPENKIATPLSVLLRKKFNI 222

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           +MMAADFTSLISEFSLSGF+VGCP+DR RPS  A QVKVFVDDLC TGKLEGVKYTYWNE
Sbjct: 223 DMMAADFTSLISEFSLSGFIVGCPYDRLRPSPHAVQVKVFVDDLCKTGKLEGVKYTYWNE 282

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           C+TSKNV+LLLKPL+LHPVELKTMLDKFAAVGILQ
Sbjct: 283 CFTSKNVELLLKPLTLHPVELKTMLDKFAAVGILQ 316

[Close]

BLAST of Spo18740.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EXD0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g145830 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.400e-68
Identity = 131/155 (84.52%), Postives = 144/155 (92.90%), Query Frame = 1

		  
Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           M+++KPL LFQDL+KT NALERGR LGLDVG KYVGLA+SDP+NKIA P+SVLLRKK NI
Sbjct: 1   MKHMKPLSLFQDLLKT-NALERGRLLGLDVGDKYVGLALSDPENKIATPLSVLLRKKFNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           +MMAADFTSLISEFSLSGF+VGCP+DR RPS  A QVKVFVDDLC TGKLEGVKYTYWNE
Sbjct: 61  DMMAADFTSLISEFSLSGFIVGCPYDRLRPSPHAVQVKVFVDDLCKTGKLEGVKYTYWNE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           C+TSKNV+LLLKPL+LHPVELKTMLDKFAAVGILQ
Sbjct: 121 CFTSKNVELLLKPLTLHPVELKTMLDKFAAVGILQ 154

[Close]

BLAST of Spo18740.1 vs. UniProtKB/TrEMBL
Match: B9GKI3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09310g PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.000e-58
Identity = 114/155 (73.55%), Postives = 135/155 (87.10%), Query Frame = 1

		  
Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           M+YV+PL LF +L+KT+ A+ +GRFLGLDVG KYVGLAVSDP NKIA P+SVLLRKKSNI
Sbjct: 1   MKYVRPLSLFHELLKTS-AINQGRFLGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
            +MA DF SLISE SL GF+VG PFDRQR + DA +VK+FVDDLC TGKLEGVK+TYW+E
Sbjct: 61  ELMATDFQSLISELSLGGFIVGYPFDRQRGAPDAVRVKLFVDDLCKTGKLEGVKFTYWDE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           C+TSKNV+LL+KPL LHPV  K+++DKFAAVGILQ
Sbjct: 121 CFTSKNVELLVKPLDLHPVHAKSIMDKFAAVGILQ 154

[Close]

BLAST of Spo18740.1 vs. ExPASy Swiss-Prot
Match: YQGF_NITHX (Putative pre-16S rRNA nuclease OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=Nham_2279 PE=3 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 9.400e-10
Identity = 43/136 (31.62%), Postives = 70/136 (51.47%), Query Frame = 1

		  
Query: 21  ERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNINMMAADFTSLISEFSLSGFV 80
           ERG  +GLD+G K +G+AVSDPD ++A  V  L RK    +  AA   ++  E + +GFV
Sbjct: 17  ERGALVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTAD--AARLLAIAGERNAAGFV 76

Query: 81  VGCPFDRQRPSADAAQ-VKVFVDDLCNTGKLEGVKYTYWNECYTSKNVDLLLKPLSLHPV 140
           +G P +        AQ  + F     N  +L  +    W+E  ++  V+  L  + +   
Sbjct: 77  LGLPINMDGSEGPRAQSTRAFAR---NLARLTDLAIGLWDERLSTVAVERELIGMDMSRA 136

Query: 141 ELKTMLDKFAAVGILQ 156
           +   ++D+ AA+ ILQ
Sbjct: 137 KRAKVIDEHAAIFILQ 147

[Close]

BLAST of Spo18740.1 vs. ExPASy Swiss-Prot
Match: YQGF_BRASB (Putative pre-16S rRNA nuclease OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=BBta_4721 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.400e-10
Identity = 44/136 (32.35%), Postives = 69/136 (50.74%), Query Frame = 1

		  
Query: 21  ERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNINMMAADFTSLISEFSLSGFV 80
           ERG  +GLD+G K +G+AVSDPD ++A  V  + RK    +  AA   ++ SE  + GFV
Sbjct: 17  ERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKAD--AARLLAISSERKVVGFV 76

Query: 81  VGCPFDRQRPSADAAQ-VKVFVDDLCNTGKLEGVKYTYWNECYTSKNVDLLLKPLSLHPV 140
           +G P +        AQ  + F  +L N   L  +    W+E  ++  V+  L  + +   
Sbjct: 77  LGLPINMDGSEGPRAQSTRAFARNLAN---LTDLPIGLWDERLSTAAVERELIGMDVSRA 136

Query: 141 ELKTMLDKFAAVGILQ 156
               ++D  AA+ ILQ
Sbjct: 137 RRAEVIDTHAAIFILQ 147

[Close]

BLAST of Spo18740.1 vs. ExPASy Swiss-Prot
Match: YQGF_EUBE2 (Putative pre-16S rRNA nuclease OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=EUBELI_00774 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.200e-9
Identity = 42/133 (31.58%), Postives = 67/133 (50.38%), Query Frame = 1

		  
Query: 24  RFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSN-INMMAADFTSLISEFSLSGFVVG 83
           R +GLDVG K VG+A+SDP    A P   + RK++N +    A    +ISE+ ++  VVG
Sbjct: 2   RIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVG 61

Query: 84  CPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNECYTSKNVDLLLKPLSLHPVELK 143
            P  +        + K   +      +  G+  T W+E  T+   D +L+   +     K
Sbjct: 62  YP--KNMDDTIGERAKACEEFAAALERRTGLPVTLWDERLTTVEADEVLEECGMRRENRK 121

Query: 144 TMLDKFAAVGILQ 156
           T++D+ AAV IL+
Sbjct: 122 TVIDQLAAVFILR 132

[Close]

BLAST of Spo18740.1 vs. ExPASy Swiss-Prot
Match: YQGF_BRASO (Putative pre-16S rRNA nuclease OS=Bradyrhizobium sp. (strain ORS278) GN=BRADO4497 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.100e-9
Identity = 42/136 (30.88%), Postives = 69/136 (50.74%), Query Frame = 1

		  
Query: 21  ERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNINMMAADFTSLISEFSLSGFV 80
           ERG  +GLD+G K +G+AVSDPD ++A  V  + RK    +  AA   ++ +E  + GFV
Sbjct: 17  ERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKAD--AARLLAICAERKVVGFV 76

Query: 81  VGCPFDRQRPSADAAQ-VKVFVDDLCNTGKLEGVKYTYWNECYTSKNVDLLLKPLSLHPV 140
           +G P +        AQ  + F  +L     L  +    W+E  ++  V+  L  + +   
Sbjct: 77  LGLPINMDGSEGPRAQSTRAFARNLAG---LTDLPIGLWDERLSTAAVERELIGMDVSRA 136

Query: 141 ELKTMLDKFAAVGILQ 156
           +   ++D  AA+ ILQ
Sbjct: 137 KRAEVIDTHAAIFILQ 147

[Close]

BLAST of Spo18740.1 vs. ExPASy Swiss-Prot
Match: YQGF_BRADU (Putative pre-16S rRNA nuclease OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN=blr5094 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.100e-9
Identity = 42/136 (30.88%), Postives = 70/136 (51.47%), Query Frame = 1

		  
Query: 21  ERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNINMMAADFTSLISEFSLSGFV 80
           ERG  +GLD+G K +G+AVS+PD ++A  V  + RK       AA   ++ +E  + GFV
Sbjct: 17  ERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKA--FKQDAARLLAIAAERKVVGFV 76

Query: 81  VGCPFDRQRPSADAAQ-VKVFVDDLCNTGKLEGVKYTYWNECYTSKNVDLLLKPLSLHPV 140
           +G P +        AQ  + F  +L N   L  +    W+E  ++  V+  L  + +   
Sbjct: 77  LGLPINMDGSEGPRAQSTRAFARNLAN---LTTLPIGLWDERLSTAAVERELIGMDVSRA 136

Query: 141 ELKTMLDKFAAVGILQ 156
           +   ++D+ AA+ ILQ
Sbjct: 137 KRAEVIDEHAAIFILQ 147

[Close]

BLAST of Spo18740.1 vs. TAIR (Arabidopsis)
Match: AT3G52905.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 181.8 bits (460), Expect = 3.900e-46
Identity = 92/155 (59.35%), Postives = 117/155 (75.48%), Query Frame = 1

		  
Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           M+YVKPL L  + +KT  ++  GRFLGLDVG KYVGLA+SDP N +A P+SVLLRKKSNI
Sbjct: 1   MKYVKPLSLLGNALKTKVSVP-GRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           ++MA DF +L+  FS+SG VVG PF +     D   V +F+++L  T KL+ VKYTYW+E
Sbjct: 61  DLMATDFQNLVKAFSVSGLVVGYPFGKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYWDE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
             +SK V+L+LKPL+LHPV+ KTMLDK AAV ILQ
Sbjct: 121 RLSSKTVELMLKPLNLHPVQEKTMLDKLAAVVILQ 154

The following BLAST results are available for this feature:

BLAST of Spo18740.1 vs. NCBI nr
BLAST of Spo18740.1 vs. UniProtKB/TrEMBL
BLAST of Spo18740.1 vs. ExPASy Swiss-Prot
BLAST of Spo18740.1 vs. TAIR (Arabidopsis)

BLAST of Spo18740.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902148557\|gb\|KNA05257.1\|	1.4e-82	100.	hypothetical protein SOVF_1921...	[more]
gi\|902148556\|gb\|KNA05256.1\|	1.4e-82	100.	hypothetical protein SOVF_1921...	[more]
gi\|731341874\|ref\|XP_010682115.1\|	3.4e-68	84.5	PREDICTED: uncharacterized pro...	[more]
gi\|870856210\|gb\|KMT07887.1\|	3.4e-68	84.5	hypothetical protein BVRB_6g14...	[more]
gi\|224053911\|ref\|XP_002298037.1\|	1.4e-58	73.5	hypothetical protein POPTR_000...	[more]

BLAST of Spo18740.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9QDB2_SPIOL	9.9e-83	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9QFD2_SPIOL	9.9e-83	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C2Z4_BETVU	2.4e-68	84.5	Uncharacterized protein OS=Bet...	[more]
A0A0J8EXD0_BETVU	2.4e-68	84.5	Uncharacterized protein OS=Bet...	[more]
B9GKI3_POPTR	1.0e-58	73.5	Uncharacterized protein OS=Pop...	[more]

BLAST of Spo18740.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
YQGF_NITHX	9.4e-10	31.6	Putative pre-16S rRNA nuclease...	[more]
YQGF_BRASB	9.4e-10	32.3	Putative pre-16S rRNA nuclease...	[more]
YQGF_EUBE2	1.2e-9	31.5	Putative pre-16S rRNA nuclease...	[more]
YQGF_BRASO	6.1e-9	30.8	Putative pre-16S rRNA nuclease...	[more]
YQGF_BRADU	6.1e-9	30.8	Putative pre-16S rRNA nuclease...	[more]

BLAST of Spo18740.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
AT3G52905.1	3.9e-46	59.3	Polynucleotidyl transferase, r...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005227	Putative pre-16S rRNA nuclease	HAMAP	MF_00651	Nuclease_YqgF	coord: 23..162 score: 14
IPR005227	Putative pre-16S rRNA nuclease	PFAM	PF03652	RuvX	coord: 24..156 score: 8.9
IPR006641	YqgF/RNase H-like domain	GENE3D	3.30.420.140		coord: 22..156 score: 5.6
IPR006641	YqgF/RNase H-like domain	SMART	SM00732	rnase_8s	coord: 23..127 score: 5.0
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 23..156 score: 5.31
None	No IPR available	PANTHER	PTHR33317	FAMILY NOT NAMED	coord: 1..155 score: 6.1
None	No IPR available	PANTHER	PTHR33317:SF1	POLYNUCLEOTIDYL TRANSFERASE/ RIBONUCLEASE H-LIKE PROTEIN	coord: 1..155 score: 6.1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds
molecular_function	GO:0016740	transferase activity