Spo18781.1 (mRNA)

Overview
NameSpo18781.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 34641470 .. 34643672 (+)
Sequence length1336
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCGCCATATGATTTTTTGTGCCAGACAAGTTCAATTGAGTTCTTCGCAATATACCATTTTGACTTCAATGAATGCAAACATGAAGGTAATATACTAGCTAGATACGGTACTGTTTCAGTTCACTTGTGTATGTTTATATAGTGAAATTATTGTCATTTGTGCTATTGTCATGATGACATCAACTCGTTGGTGGTAAATTTACACGTTGCATAATCTCAGGACTCAGTCACTCCTATTTATCCAGAGGACAGGAAGACTGAGGCTTTGAGTCGCTTGAGTTCGTTATATAACGGGAAATTGAAAAATAGTAAAATACCAATGAAGTTAGAGATGTGACTTTGAGCAATGTAGCTGATATTATTCTCGAAATGGATGAAAAACCAACTTAGTGATTGGCATGATATGTTGCTACTGAACAGAAATGTTGCACTTCCAAGTGATGTGAAATCTATAAAACAATTTGAAACCTTCTCTTTTGTATGCGTCATGCTCTTAGATTGAACGGGTTCCCTGTTCATTAGCTGAAATTGCTTGAATTGGTAATCCTTCGAATGATGTTTTATTTATATGCGCCATGTCTTGTTACTTCAATTTCCAGATTGGTTGTCTTGTTTGCTGTAGTGATACCGTGGTATTACACTTGAATTGATCACGGTACAAGAACTTATCTTGTCTTTTGGATATCAATGCAACAACAATTTATGTGATTAAACTTTTGTCTCATTTATAGAACTTGATTTCTTCGCAATAGCTAGGATGCGTGTTTTTTTTACCGGTACTTACATTTTTTGTCTTCCTGAAAGTCGGAGAGGGGAAGTTTGCACTTGGAACATAGAATCCCCAGTTTAGGTGGAAAACATTCTGATCTTCTCTTAGAGATTTTGTTTCCGTTGAAGTCTGATGTGTGTATGATTTACCCTTGAGAAATATCAGTAAAGGAGTTTGCATTGTCTTACATGCTGCCTTTTCAATTAAATTTATAACATCTTTGATTCCTACTGATTTAGCACTGAGCCTAGAGCTACATAACCTCAAAATCAGTAGAATCTGTATAAGGAATTGCAGGACCAGGCTACACCACAAGGACGAAGATGTCATTCATGGAGGCTTAGTTGGGCACTTTAGAATGTGGGATTCAACCTGCATCACCTCCACCGTAGTAAGAATCTGGATTCCAATACCCATAATCTTCTTCTCCCACAAATCTCTCAAGTCGTGGCTGGCGTTGATGTTGGACACTAAGGATCTTGTTTTCGGTCGTGCTTTTGATGAAAGTTCCATCTTGCAGAAGTCTGTTGTTTATGTAGAGTCCGACAACCACAAGATTAACCTTGTGGTGAGAATAATATCACTTGCATTGTGATAATTAAAAAGGCTGGTTTTTAGACTAATTCAGTGAAAATGGGATTGAGAGTGGATAATGGCAGCATGGATATCAGAAAATTATCGACGCTCCTTTGTTTGGCAATCAGGATTAGTTATTGTAGTGAAGGGAAGGAACGAGAATTGATTGAAATTGAAAACGAAAAGTTTATATACCAAATGTAATTCTCTTGTTTCAGGCTAGGGGAGTACCTTGAGGTACCTGAGGTAATGCCCTATGTGGTAGAGAAAGAACTGAAACATTTTGAATATGAAGACCTTAAAGCAGTCTGTGAGGCAGCAAGTAAGGCCTGGATCGTGATCCTGTCAAGCTTTATTGATCAGTCTGTGTTAGCTGAGCTCAGATCATCCTATTTGGCTCTCTCAACATGATAATAATCGACACTAGTATATCATGTCGAGAGAGCCAAATAGAATAGTATATAGAAAAGAGCTTCATGGATGCTCCTGGACACTGAGAATCTTGCTAGTAGATTGATATGAGTATTACTAAAGTAGTTGAAGATGTGTGTGTTACCTCTGTTTCCTTTTCACACACTATAGGTTATCCATTAGTTGATTAAACGGCGGTTGGAGGGCTGTCAAAAACTGATCCGATCCAACCGATTTCTGACAAAAATCGAAGTAACCCGAAAAACTAAATTCACACATTCAATCGGCATAAGCACAATAACCCCGTACAACTACATTGTCCGATTATACCCGAATCGATTATACCTGATATGAAAGAGCGGCTCGAATGCCAAAAAGGGAGAGTGCCTACTATATCCTTCTCGTAAATTAACAACATTTAAGAAAAAGTGAAAACAGAAAAC

mRNA sequence

ATGGTCCGCCATATGATTTTTTGTGCCAGACAAGTTCAATTGAGTTCTTCGCAATATACCATTTTGACTTCAATGAATGCAAACATGAAGGACTCAGTCACTCCTATTTATCCAGAGGACAGGAAGACTGAGGCTTTGAGTCGCTTGAGTTCGTTATATAACGGGAAATTGAAAAATAGTAAAATACCAATGAAGTTAGAGATGACCAGGCTACACCACAAGGACGAAGATGTCATTCATGGAGGCTTAGTTGGGCACTTTAGAATGTGGGATTCAACCTGCATCACCTCCACCGTAGTAAGAATCTGGATTCCAATACCCATAATCTTCTTCTCCCACAAATCTCTCAAGTCGTGGCTGGCGTTGATGTTGGACACTAAGGATCTTGTTTTCGGTCGTGCTTTTGATGAAAGTTCCATCTTGCAGAAGTCTGTTGTTTATGTAGAGTCCGACAACCACAAGATTAACCTTGTGGTGAGAATAATATCACTTGCATTGTGATAATTAAAAAGGCTGGTTTTTAGACTAATTCAGTGAAAATGGGATTGAGAGTGGATAATGGCAGCATGGATATCAGAAAATTATCGACGCTCCTTTGTTTGGCAATCAGGATTAGTTATTGTAGTGAAGGGAAGGAACGAGAATTGATTGAAATTGAAAACGAAAAGTTTATATACCAAATGTAATTCTCTTGTTTCAGGCTAGGGGAGTACCTTGAGGTACCTGAGGTAATGCCCTATGTGGTAGAGAAAGAACTGAAACATTTTGAATATGAAGACCTTAAAGCAGTCTGTGAGGCAGCAAGTAAGGCCTGGATCGTGATCCTGTCAAGCTTTATTGATCAGTCTGTGTTAGCTGAGCTCAGATCATCCTATTTGGCTCTCTCAACATGATAATAATCGACACTAGTATATCATGTCGAGAGAGCCAAATAGAATAGTATATAGAAAAGAGCTTCATGGATGCTCCTGGACACTGAGAATCTTGCTAGTAGATTGATATGAGTATTACTAAAGTAGTTGAAGATGTGTGTGTTACCTCTGTTTCCTTTTCACACACTATAGGTTATCCATTAGTTGATTAAACGGCGGTTGGAGGGCTGTCAAAAACTGATCCGATCCAACCGATTTCTGACAAAAATCGAAGTAACCCGAAAAACTAAATTCACACATTCAATCGGCATAAGCACAATAACCCCGTACAACTACATTGTCCGATTATACCCGAATCGATTATACCTGATATGAAAGAGCGGCTCGAATGCCAAAAAGGGAGAGTGCCTACTATATCCTTCTCGTAAATTAACAACATTTAAGAAAAAGTGAAAACAGAAAAC

Coding sequence (CDS)

ATGGTCCGCCATATGATTTTTTGTGCCAGACAAGTTCAATTGAGTTCTTCGCAATATACCATTTTGACTTCAATGAATGCAAACATGAAGGACTCAGTCACTCCTATTTATCCAGAGGACAGGAAGACTGAGGCTTTGAGTCGCTTGAGTTCGTTATATAACGGGAAATTGAAAAATAGTAAAATACCAATGAAGTTAGAGATGACCAGGCTACACCACAAGGACGAAGATGTCATTCATGGAGGCTTAGTTGGGCACTTTAGAATGTGGGATTCAACCTGCATCACCTCCACCGTAGTAAGAATCTGGATTCCAATACCCATAATCTTCTTCTCCCACAAATCTCTCAAGTCGTGGCTGGCGTTGATGTTGGACACTAAGGATCTTGTTTTCGGTCGTGCTTTTGATGAAAGTTCCATCTTGCAGAAGTCTGTTGTTTATGTAGAGTCCGACAACCACAAGATTAACCTTGTGGTGAGAATAATATCACTTGCATTGTGA

Protein sequence

MVRHMIFCARQVQLSSSQYTILTSMNANMKDSVTPIYPEDRKTEALSRLSSLYNGKLKNSKIPMKLEMTRLHHKDEDVIHGGLVGHFRMWDSTCITSTVVRIWIPIPIIFFSHKSLKSWLALMLDTKDLVFGRAFDESSILQKSVVYVESDNHKINLVVRIISLAL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo18781Spo18781gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo18781.1Spo18781.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18781.1.exon.1Spo18781.1.exon.1exon
Spo18781.1.exon.2Spo18781.1.exon.2exon
Spo18781.1.exon.3Spo18781.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18781.1.CDS.1Spo18781.1.CDS.1CDS
Spo18781.1.CDS.2Spo18781.1.CDS.2CDS
Spo18781.1.CDS.3Spo18781.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18781.1.utr3p.1Spo18781.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo18781.1 vs. NCBI nr
Match: gi|902235276|gb|KNA23837.1| (hypothetical protein SOVF_020620 [Spinacia oleracea])

HSP 1 Score: 60.8 bits (146), Expect = 2.500e-6
Identity = 51/140 (36.43%), Postives = 70/140 (50.00%), Query Frame = 1 

		  

Query: 41  RKTEALSRLSSLYNGKLKNSKIPMKLEMTRLHHKDEDVIHGG-LVGHFRMWDSTCITS-- 100
           ++ EALSRL+S+YNGK KN+     + +T +     D++    +      W    + +  
Sbjct: 170 QEDEALSRLNSVYNGKWKNTNEVRDVPLTNV----ADILFSERMKNRLSDWHDMLLLNRS 229

Query: 101 ----TVVRIWIPIPIIFFS-HKSLKS-----------WLALMLDTKDLVFGRAFDESSIL 160
               + V+       IFFS H +L+             L      KDLVF RA+DESS L
Sbjct: 230 AALPSDVKSKQQFETIFFSMHPALRLNGFTVHQLKLIELVTRKHFKDLVFVRAYDESSFL 289

Query: 161 QKSVVYVESDNHKINLVVRI 162
           QK VVYVESDN KINL+  I
Sbjct: 290 QKLVVYVESDNDKINLMEMI 305
[Close]
BLAST of Spo18781.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RYB4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_020620 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.800e-6
Identity = 51/140 (36.43%), Postives = 70/140 (50.00%), Query Frame = 1 

		  

Query: 41  RKTEALSRLSSLYNGKLKNSKIPMKLEMTRLHHKDEDVIHGG-LVGHFRMWDSTCITS-- 100
           ++ EALSRL+S+YNGK KN+     + +T +     D++    +      W    + +  
Sbjct: 170 QEDEALSRLNSVYNGKWKNTNEVRDVPLTNV----ADILFSERMKNRLSDWHDMLLLNRS 229

Query: 101 ----TVVRIWIPIPIIFFS-HKSLKS-----------WLALMLDTKDLVFGRAFDESSIL 160
               + V+       IFFS H +L+             L      KDLVF RA+DESS L
Sbjct: 230 AALPSDVKSKQQFETIFFSMHPALRLNGFTVHQLKLIELVTRKHFKDLVFVRAYDESSFL 289

Query: 161 QKSVVYVESDNHKINLVVRI 162
           QK VVYVESDN KINL+  I
Sbjct: 290 QKLVVYVESDNDKINLMEMI 305
The following BLAST results are available for this feature:
BLAST of Spo18781.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902235276|gb|KNA23837.1|2.5e-636.4hypothetical protein SOVF_0206... [more]
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BLAST of Spo18781.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RYB4_SPIOL1.8e-636.4Uncharacterized protein OS=Spi... [more]
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BLAST of Spo18781.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo18781.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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