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Overview
| Name | Spo18781.1 |
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| Type | mRNA |
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| Organism | Spinacia oleracea (Spinach) |
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| Description | Unknown protein |
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| Location | chr6 : 34641470 .. 34643672 (+) |
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| Sequence length | 1336 |
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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTCCGCCATATGATTTTTTGTGCCAGACAAGTTCAATTGAGTTCTTCGCAATATACCATTTTGACTTCAATGAATGCAAACATGAAGGTAATATACTAGCTAGATACGGTACTGTTTCAGTTCACTTGTGTATGTTTATATAGTGAAATTATTGTCATTTGTGCTATTGTCATGATGACATCAACTCGTTGGTGGTAAATTTACACGTTGCATAATCTCAGGACTCAGTCACTCCTATTTATCCAGAGGACAGGAAGACTGAGGCTTTGAGTCGCTTGAGTTCGTTATATAACGGGAAATTGAAAAATAGTAAAATACCAATGAAGTTAGAGATGTGACTTTGAGCAATGTAGCTGATATTATTCTCGAAATGGATGAAAAACCAACTTAGTGATTGGCATGATATGTTGCTACTGAACAGAAATGTTGCACTTCCAAGTGATGTGAAATCTATAAAACAATTTGAAACCTTCTCTTTTGTATGCGTCATGCTCTTAGATTGAACGGGTTCCCTGTTCATTAGCTGAAATTGCTTGAATTGGTAATCCTTCGAATGATGTTTTATTTATATGCGCCATGTCTTGTTACTTCAATTTCCAGATTGGTTGTCTTGTTTGCTGTAGTGATACCGTGGTATTACACTTGAATTGATCACGGTACAAGAACTTATCTTGTCTTTTGGATATCAATGCAACAACAATTTATGTGATTAAACTTTTGTCTCATTTATAGAACTTGATTTCTTCGCAATAGCTAGGATGCGTGTTTTTTTTACCGGTACTTACATTTTTTGTCTTCCTGAAAGTCGGAGAGGGGAAGTTTGCACTTGGAACATAGAATCCCCAGTTTAGGTGGAAAACATTCTGATCTTCTCTTAGAGATTTTGTTTCCGTTGAAGTCTGATGTGTGTATGATTTACCCTTGAGAAATATCAGTAAAGGAGTTTGCATTGTCTTACATGCTGCCTTTTCAATTAAATTTATAACATCTTTGATTCCTACTGATTTAGCACTGAGCCTAGAGCTACATAACCTCAAAATCAGTAGAATCTGTATAAGGAATTGCAGGACCAGGCTACACCACAAGGACGAAGATGTCATTCATGGAGGCTTAGTTGGGCACTTTAGAATGTGGGATTCAACCTGCATCACCTCCACCGTAGTAAGAATCTGGATTCCAATACCCATAATCTTCTTCTCCCACAAATCTCTCAAGTCGTGGCTGGCGTTGATGTTGGACACTAAGGATCTTGTTTTCGGTCGTGCTTTTGATGAAAGTTCCATCTTGCAGAAGTCTGTTGTTTATGTAGAGTCCGACAACCACAAGATTAACCTTGTGGTGAGAATAATATCACTTGCATTGTGATAATTAAAAAGGCTGGTTTTTAGACTAATTCAGTGAAAATGGGATTGAGAGTGGATAATGGCAGCATGGATATCAGAAAATTATCGACGCTCCTTTGTTTGGCAATCAGGATTAGTTATTGTAGTGAAGGGAAGGAACGAGAATTGATTGAAATTGAAAACGAAAAGTTTATATACCAAATGTAATTCTCTTGTTTCAGGCTAGGGGAGTACCTTGAGGTACCTGAGGTAATGCCCTATGTGGTAGAGAAAGAACTGAAACATTTTGAATATGAAGACCTTAAAGCAGTCTGTGAGGCAGCAAGTAAGGCCTGGATCGTGATCCTGTCAAGCTTTATTGATCAGTCTGTGTTAGCTGAGCTCAGATCATCCTATTTGGCTCTCTCAACATGATAATAATCGACACTAGTATATCATGTCGAGAGAGCCAAATAGAATAGTATATAGAAAAGAGCTTCATGGATGCTCCTGGACACTGAGAATCTTGCTAGTAGATTGATATGAGTATTACTAAAGTAGTTGAAGATGTGTGTGTTACCTCTGTTTCCTTTTCACACACTATAGGTTATCCATTAGTTGATTAAACGGCGGTTGGAGGGCTGTCAAAAACTGATCCGATCCAACCGATTTCTGACAAAAATCGAAGTAACCCGAAAAACTAAATTCACACATTCAATCGGCATAAGCACAATAACCCCGTACAACTACATTGTCCGATTATACCCGAATCGATTATACCTGATATGAAAGAGCGGCTCGAATGCCAAAAAGGGAGAGTGCCTACTATATCCTTCTCGTAAATTAACAACATTTAAGAAAAAGTGAAAACAGAAAAC mRNA sequence ATGGTCCGCCATATGATTTTTTGTGCCAGACAAGTTCAATTGAGTTCTTCGCAATATACCATTTTGACTTCAATGAATGCAAACATGAAGGACTCAGTCACTCCTATTTATCCAGAGGACAGGAAGACTGAGGCTTTGAGTCGCTTGAGTTCGTTATATAACGGGAAATTGAAAAATAGTAAAATACCAATGAAGTTAGAGATGACCAGGCTACACCACAAGGACGAAGATGTCATTCATGGAGGCTTAGTTGGGCACTTTAGAATGTGGGATTCAACCTGCATCACCTCCACCGTAGTAAGAATCTGGATTCCAATACCCATAATCTTCTTCTCCCACAAATCTCTCAAGTCGTGGCTGGCGTTGATGTTGGACACTAAGGATCTTGTTTTCGGTCGTGCTTTTGATGAAAGTTCCATCTTGCAGAAGTCTGTTGTTTATGTAGAGTCCGACAACCACAAGATTAACCTTGTGGTGAGAATAATATCACTTGCATTGTGATAATTAAAAAGGCTGGTTTTTAGACTAATTCAGTGAAAATGGGATTGAGAGTGGATAATGGCAGCATGGATATCAGAAAATTATCGACGCTCCTTTGTTTGGCAATCAGGATTAGTTATTGTAGTGAAGGGAAGGAACGAGAATTGATTGAAATTGAAAACGAAAAGTTTATATACCAAATGTAATTCTCTTGTTTCAGGCTAGGGGAGTACCTTGAGGTACCTGAGGTAATGCCCTATGTGGTAGAGAAAGAACTGAAACATTTTGAATATGAAGACCTTAAAGCAGTCTGTGAGGCAGCAAGTAAGGCCTGGATCGTGATCCTGTCAAGCTTTATTGATCAGTCTGTGTTAGCTGAGCTCAGATCATCCTATTTGGCTCTCTCAACATGATAATAATCGACACTAGTATATCATGTCGAGAGAGCCAAATAGAATAGTATATAGAAAAGAGCTTCATGGATGCTCCTGGACACTGAGAATCTTGCTAGTAGATTGATATGAGTATTACTAAAGTAGTTGAAGATGTGTGTGTTACCTCTGTTTCCTTTTCACACACTATAGGTTATCCATTAGTTGATTAAACGGCGGTTGGAGGGCTGTCAAAAACTGATCCGATCCAACCGATTTCTGACAAAAATCGAAGTAACCCGAAAAACTAAATTCACACATTCAATCGGCATAAGCACAATAACCCCGTACAACTACATTGTCCGATTATACCCGAATCGATTATACCTGATATGAAAGAGCGGCTCGAATGCCAAAAAGGGAGAGTGCCTACTATATCCTTCTCGTAAATTAACAACATTTAAGAAAAAGTGAAAACAGAAAAC Coding sequence (CDS) ATGGTCCGCCATATGATTTTTTGTGCCAGACAAGTTCAATTGAGTTCTTCGCAATATACCATTTTGACTTCAATGAATGCAAACATGAAGGACTCAGTCACTCCTATTTATCCAGAGGACAGGAAGACTGAGGCTTTGAGTCGCTTGAGTTCGTTATATAACGGGAAATTGAAAAATAGTAAAATACCAATGAAGTTAGAGATGACCAGGCTACACCACAAGGACGAAGATGTCATTCATGGAGGCTTAGTTGGGCACTTTAGAATGTGGGATTCAACCTGCATCACCTCCACCGTAGTAAGAATCTGGATTCCAATACCCATAATCTTCTTCTCCCACAAATCTCTCAAGTCGTGGCTGGCGTTGATGTTGGACACTAAGGATCTTGTTTTCGGTCGTGCTTTTGATGAAAGTTCCATCTTGCAGAAGTCTGTTGTTTATGTAGAGTCCGACAACCACAAGATTAACCTTGTGGTGAGAATAATATCACTTGCATTGTGA Protein sequence MVRHMIFCARQVQLSSSQYTILTSMNANMKDSVTPIYPEDRKTEALSRLSSLYNGKLKNSKIPMKLEMTRLHHKDEDVIHGGLVGHFRMWDSTCITSTVVRIWIPIPIIFFSHKSLKSWLALMLDTKDLVFGRAFDESSILQKSVVYVESDNHKINLVVRIISLAL
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
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| Spo18781 | Spo18781 | gene |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
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| Spo18781.1 | Spo18781.1-protein | polypeptide |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
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| Spo18781.1.exon.1 | Spo18781.1.exon.1 | exon |
| Spo18781.1.exon.2 | Spo18781.1.exon.2 | exon |
| Spo18781.1.exon.3 | Spo18781.1.exon.3 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
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| Spo18781.1.CDS.1 | Spo18781.1.CDS.1 | CDS |
| Spo18781.1.CDS.2 | Spo18781.1.CDS.2 | CDS |
| Spo18781.1.CDS.3 | Spo18781.1.CDS.3 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
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| Spo18781.1.utr3p.1 | Spo18781.1.utr3p.1 | three_prime_UTR |
Homology
BLAST of Spo18781.1 vs. NCBI nr
Match: gi|902235276|gb|KNA23837.1| (hypothetical protein SOVF_020620 [Spinacia oleracea]) HSP 1 Score: 60.8 bits (146), Expect = 2.500e-6 Identity = 51/140 (36.43%), Postives = 70/140 (50.00%), Query Frame = 1
Query: 41 RKTEALSRLSSLYNGKLKNSKIPMKLEMTRLHHKDEDVIHGG-LVGHFRMWDSTCITS-- 100
++ EALSRL+S+YNGK KN+ + +T + D++ + W + +
Sbjct: 170 QEDEALSRLNSVYNGKWKNTNEVRDVPLTNV----ADILFSERMKNRLSDWHDMLLLNRS 229
Query: 101 ----TVVRIWIPIPIIFFS-HKSLKS-----------WLALMLDTKDLVFGRAFDESSIL 160
+ V+ IFFS H +L+ L KDLVF RA+DESS L
Sbjct: 230 AALPSDVKSKQQFETIFFSMHPALRLNGFTVHQLKLIELVTRKHFKDLVFVRAYDESSFL 289
Query: 161 QKSVVYVESDNHKINLVVRI 162
QK VVYVESDN KINL+ I
Sbjct: 290 QKLVVYVESDNDKINLMEMI 305
BLAST of Spo18781.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RYB4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_020620 PE=4 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 1.800e-6 Identity = 51/140 (36.43%), Postives = 70/140 (50.00%), Query Frame = 1
Query: 41 RKTEALSRLSSLYNGKLKNSKIPMKLEMTRLHHKDEDVIHGG-LVGHFRMWDSTCITS-- 100
++ EALSRL+S+YNGK KN+ + +T + D++ + W + +
Sbjct: 170 QEDEALSRLNSVYNGKWKNTNEVRDVPLTNV----ADILFSERMKNRLSDWHDMLLLNRS 229
Query: 101 ----TVVRIWIPIPIIFFS-HKSLKS-----------WLALMLDTKDLVFGRAFDESSIL 160
+ V+ IFFS H +L+ L KDLVF RA+DESS L
Sbjct: 230 AALPSDVKSKQQFETIFFSMHPALRLNGFTVHQLKLIELVTRKHFKDLVFVRAYDESSFL 289
Query: 161 QKSVVYVESDNHKINLVVRI 162
QK VVYVESDN KINL+ I
Sbjct: 290 QKLVVYVESDNDKINLMEMI 305
The following BLAST results are available for this feature:
BLAST of Spo18781.1 vs. NCBI nr
Analysis Date: 2018-06-29 ( blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
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BLAST of Spo18781.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 ( blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
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BLAST of Spo18781.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 ( blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
| Match Name | E-value | Identity | Description | |
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BLAST of Spo18781.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 ( blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
| Match Name | E-value | Identity | Description | |
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