Spo18844.1 (mRNA) | SpinachBase

Overview


Name	Spo18844.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Nodulin-related protein 1, putative
Location	chr2 : 47866851 .. 47867300 (+)
Sequence length	450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGAGAAATTCCCAAGAGCCACAGCGAAGCAACAACAGAAGAAACCCCAAAGATCCTTAGCGAAGCAACAACAGAAGAAACTCCTGCTAAGAGCGGCCATGCCTATGGCGAACCAACATCAACATCGGACTTGGTTGCTAGCGCTAAGACTGTAGCCGAGGCAGCACAGTTAGCTTGTTCTAACCAGAGTGACAAGATTGATAAGGCCAAGGTTTCTGAAGCTGCTGAAGATGTTCTAGAAGCCGCTAAGAAATACGGGAACCTCGATGAGAAGAGCGGTGTTGGACAGTATGTTGGTAAGGCGGAAGGTTATCTTCACAACCTTCACGCCTCCTCTGATCACCCTGTTGAGGGTGGTGAGAAGAAGCCTGAGGCTGACGAAAAGAAGGAGTCTGGTGGTGGTGCTGCAGGTTTGATGGACATGGCTAAAGGATTCTTCAAGTAA

mRNA sequence

ATGGAAGGAGAAATTCCCAAGAGCCACAGCGAAGCAACAACAGAAGAAACCCCAAAGATCCTTAGCGAAGCAACAACAGAAGAAACTCCTGCTAAGAGCGGCCATGCCTATGGCGAACCAACATCAACATCGGACTTGGTTGCTAGCGCTAAGACTGTAGCCGAGGCAGCACAGTTAGCTTGTTCTAACCAGAGTGACAAGATTGATAAGGCCAAGGTTTCTGAAGCTGCTGAAGATGTTCTAGAAGCCGCTAAGAAATACGGGAACCTCGATGAGAAGAGCGGTGTTGGACAGTATGTTGGTAAGGCGGAAGGTTATCTTCACAACCTTCACGCCTCCTCTGATCACCCTGTTGAGGGTGGTGAGAAGAAGCCTGAGGCTGACGAAAAGAAGGAGTCTGGTGGTGGTGCTGCAGGTTTGATGGACATGGCTAAAGGATTCTTCAAGTAA

Coding sequence (CDS)

ATGGAAGGAGAAATTCCCAAGAGCCACAGCGAAGCAACAACAGAAGAAACCCCAAAGATCCTTAGCGAAGCAACAACAGAAGAAACTCCTGCTAAGAGCGGCCATGCCTATGGCGAACCAACATCAACATCGGACTTGGTTGCTAGCGCTAAGACTGTAGCCGAGGCAGCACAGTTAGCTTGTTCTAACCAGAGTGACAAGATTGATAAGGCCAAGGTTTCTGAAGCTGCTGAAGATGTTCTAGAAGCCGCTAAGAAATACGGGAACCTCGATGAGAAGAGCGGTGTTGGACAGTATGTTGGTAAGGCGGAAGGTTATCTTCACAACCTTCACGCCTCCTCTGATCACCCTGTTGAGGGTGGTGAGAAGAAGCCTGAGGCTGACGAAAAGAAGGAGTCTGGTGGTGGTGCTGCAGGTTTGATGGACATGGCTAAAGGATTCTTCAAGTAA

Protein sequence

MEGEIPKSHSEATTEETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEGGEKKPEADEKKESGGGAAGLMDMAKGFFK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo18844	Spo18844	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo18844.1	Spo18844.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18844.1.exon.1	Spo18844.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18844.1.CDS.1	Spo18844.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo18844.1 vs. NCBI nr
Match: gi|902231495|gb|KNA22276.1| (hypothetical protein SOVF_035200 [Spinacia oleracea])

HSP 1 Score: 280.4 bits (716), Expect = 1.800e-72
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1


		  
Query: 1   MEGEIPKSHSEATTEETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLA 60
           MEGEIPKSHSEATTEETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLA
Sbjct: 1   MEGEIPKSHSEATTEETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLA 60

Query: 61  CSNQSDKIDKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG 120
           CSNQSDKIDKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG
Sbjct: 61  CSNQSDKIDKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG 120

Query: 121 GEKKPEADEKKESGGGAAGLMDMAKGFFK 150
           GEKKPEADEKKESGGGAAGLMDMAKGFFK
Sbjct: 121 GEKKPEADEKKESGGGAAGLMDMAKGFFK 149

[Close]

BLAST of Spo18844.1 vs. NCBI nr
Match: gi|537430792|gb|AGU69247.1| (salinity-induced protein [Salicornia brachiata])

HSP 1 Score: 142.5 bits (358), Expect = 5.900e-31
Identity = 87/128 (67.97%), Postives = 95/128 (74.22%), Query Frame = 1


		  
Query: 27  EETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVSEAAEDVLEAAKK 86
           E   AK+ H  G P STS+L+ASAKTVAEAAQ AC+ Q+DKIDKAKV+ AAEDVLEA K 
Sbjct: 2   EGEAAKTEH--GAPKSTSELMASAKTVAEAAQFACTQQTDKIDKAKVAGAAEDVLEATKS 61

Query: 87  YGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEGG----EKKPEADEKKE--SGGGAAGL 146
           YG LDE SGVGQYV KAEGYLHNLHASSD P E      EK+P A  +KE  SGGG  GL
Sbjct: 62  YGKLDENSGVGQYVTKAEGYLHNLHASSDSPSEAAGKDKEKEPSAAAEKEPSSGGGGGGL 121

Query: 147 MDMAKGFF 149
           M MAKG F
Sbjct: 122 MGMAKGLF 127

[Close]

BLAST of Spo18844.1 vs. NCBI nr
Match: gi|731339253|ref|XP_010680752.1| (PREDICTED: uncharacterized protein LOC104895828 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 139.4 bits (350), Expect = 5.000e-30
Identity = 87/140 (62.14%), Postives = 100/140 (71.43%), Query Frame = 1


		  
Query: 15  EETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVS 74
           EE PK + E    ETP KS H    PTSTSDL+ASAK VAEAAQLAC+ Q+DKIDKAKVS
Sbjct: 3   EENPKSMEE----ETP-KSEHP---PTSTSDLMASAKIVAEAAQLACTQQTDKIDKAKVS 62

Query: 75  EAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEGGEKKPEAD------ 134
           EAAE+VLEA K YG LDE +GVGQYV KA+GYLH +HASS+     G +K E+D      
Sbjct: 63  EAAEEVLEAVKTYGKLDESAGVGQYVDKAQGYLHKMHASSEDVAHSGAEKEESDAPADAA 122

Query: 135 EKKESGGGAAGLMDMAKGFF 149
           EK +  GG  GLM+MAKG F
Sbjct: 123 EKDKFSGGLGGLMNMAKGLF 134

[Close]

BLAST of Spo18844.1 vs. NCBI nr
Match: gi|870857434|gb|KMT08994.1| (hypothetical protein BVRB_6g137040 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 137.9 bits (346), Expect = 1.500e-29
Identity = 83/128 (64.84%), Postives = 95/128 (74.22%), Query Frame = 1


		  
Query: 27  EETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVSEAAEDVLEAAKK 86
           EETP KS H    PTSTSDL+ASAK VAEAAQLAC+ Q+DKIDKAKVSEAAE+VLEA K 
Sbjct: 3   EETP-KSEHP---PTSTSDLMASAKIVAEAAQLACTQQTDKIDKAKVSEAAEEVLEAVKT 62

Query: 87  YGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEGGEKKPEAD------EKKESGGGAAGL 146
           YG LDE +GVGQYV KA+GYLH +HASS+     G +K E+D      EK +  GG  GL
Sbjct: 63  YGKLDESAGVGQYVDKAQGYLHKMHASSEDVAHSGAEKEESDAPADAAEKDKFSGGLGGL 122

Query: 147 MDMAKGFF 149
           M+MAKG F
Sbjct: 123 MNMAKGLF 126

[Close]

BLAST of Spo18844.1 vs. NCBI nr
Match: gi|685350040|ref|XP_009110568.1| (PREDICTED: uncharacterized protein LOC103836092 [Brassica rapa])

HSP 1 Score: 102.4 bits (254), Expect = 6.800e-19
Identity = 65/140 (46.43%), Postives = 86/140 (61.43%), Query Frame = 1


		  
Query: 23  EATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVSEAAEDVLE 82
           E      P +   A   P S+S+L+ASAK VAEAAQ A  N+SDK+DKAKV+ A+ D+L+
Sbjct: 17  EEPDHNKPVEGTEAANRPASSSELMASAKVVAEAAQAAARNESDKLDKAKVAGASADILD 76

Query: 83  AAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG------------GEKKPEADE- 142
           AA+KYG LDEKSG GQY+ KAE YL++  +S      G             + +PEA + 
Sbjct: 77  AAQKYGKLDEKSGAGQYLDKAEKYLNDFESSHSSGAAGTPPPAAGAPPPVSQAEPEAKKA 136

Query: 143 KKESGGGAAGLMDMAKGFFK 150
           ++ESGGG  G   MA+GF K
Sbjct: 137 EEESGGGLGGYAKMAQGFMK 156

[Close]

BLAST of Spo18844.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRU6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_035200 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.300e-72
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1


		  
Query: 1   MEGEIPKSHSEATTEETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLA 60
           MEGEIPKSHSEATTEETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLA
Sbjct: 1   MEGEIPKSHSEATTEETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLA 60

Query: 61  CSNQSDKIDKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG 120
           CSNQSDKIDKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG
Sbjct: 61  CSNQSDKIDKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG 120

Query: 121 GEKKPEADEKKESGGGAAGLMDMAKGFFK 150
           GEKKPEADEKKESGGGAAGLMDMAKGFFK
Sbjct: 121 GEKKPEADEKKESGGGAAGLMDMAKGFFK 149

[Close]

BLAST of Spo18844.1 vs. UniProtKB/TrEMBL
Match: T1YW73_9CARY (Salinity-induced protein OS=Salicornia brachiata PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.100e-31
Identity = 87/128 (67.97%), Postives = 95/128 (74.22%), Query Frame = 1


		  
Query: 27  EETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVSEAAEDVLEAAKK 86
           E   AK+ H  G P STS+L+ASAKTVAEAAQ AC+ Q+DKIDKAKV+ AAEDVLEA K 
Sbjct: 2   EGEAAKTEH--GAPKSTSELMASAKTVAEAAQFACTQQTDKIDKAKVAGAAEDVLEATKS 61

Query: 87  YGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEGG----EKKPEADEKKE--SGGGAAGL 146
           YG LDE SGVGQYV KAEGYLHNLHASSD P E      EK+P A  +KE  SGGG  GL
Sbjct: 62  YGKLDENSGVGQYVTKAEGYLHNLHASSDSPSEAAGKDKEKEPSAAAEKEPSSGGGGGGL 121

Query: 147 MDMAKGFF 149
           M MAKG F
Sbjct: 122 MGMAKGLF 127

[Close]

BLAST of Spo18844.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C9S4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g137040 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.000e-29
Identity = 83/128 (64.84%), Postives = 95/128 (74.22%), Query Frame = 1


		  
Query: 27  EETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVSEAAEDVLEAAKK 86
           EETP KS H    PTSTSDL+ASAK VAEAAQLAC+ Q+DKIDKAKVSEAAE+VLEA K 
Sbjct: 3   EETP-KSEHP---PTSTSDLMASAKIVAEAAQLACTQQTDKIDKAKVSEAAEEVLEAVKT 62

Query: 87  YGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEGGEKKPEAD------EKKESGGGAAGL 146
           YG LDE +GVGQYV KA+GYLH +HASS+     G +K E+D      EK +  GG  GL
Sbjct: 63  YGKLDESAGVGQYVDKAQGYLHKMHASSEDVAHSGAEKEESDAPADAAEKDKFSGGLGGL 122

Query: 147 MDMAKGFF 149
           M+MAKG F
Sbjct: 123 MNMAKGLF 126

[Close]

BLAST of Spo18844.1 vs. UniProtKB/TrEMBL
Match: M4DJP1_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.700e-19
Identity = 65/140 (46.43%), Postives = 86/140 (61.43%), Query Frame = 1


		  
Query: 23  EATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVSEAAEDVLE 82
           E      P +   A   P S+S+L+ASAK VAEAAQ A  N+SDK+DKAKV+ A+ D+L+
Sbjct: 17  EEPDHNKPVEGTEAANRPASSSELMASAKVVAEAAQAAARNESDKLDKAKVAGASADILD 76

Query: 83  AAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG------------GEKKPEADE- 142
           AA+KYG LDEKSG GQY+ KAE YL++  +S      G             + +PEA + 
Sbjct: 77  AAQKYGKLDEKSGAGQYLDKAEKYLNDFESSHSSGAAGTPPPAAGAPPPVSQAEPEAKKA 136

Query: 143 KKESGGGAAGLMDMAKGFFK 150
           ++ESGGG  G   MA+GF K
Sbjct: 137 EEESGGGLGGYAKMAQGFMK 156

[Close]

BLAST of Spo18844.1 vs. UniProtKB/TrEMBL
Match: C6TMA8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G226600 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.400e-18
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 1


		  
Query: 42  STSDLVASAKTVAEAAQLACSNQSDKIDKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVG 101
           ST++L+ SAK VAEAAQ A  + SDK+DKAKV++AA D+L+AA KYG LD+K G+GQYV 
Sbjct: 15  STTELITSAKLVAEAAQSALKSDSDKVDKAKVADAAGDLLDAAGKYGKLDDKQGIGQYVD 74

Query: 102 KAEGYLHNLHA-SSDHPVEGGEKKPEADEKKESGGGAAGLMDMAKGFFK 150
           KA  YLHN    ++  P +  E K E     ESGGG  GL ++A GFFK
Sbjct: 75  KAADYLHNYQGDNTTAPSQPAESKGE-----ESGGGLGGLANLAGGFFK 118

[Close]

BLAST of Spo18844.1 vs. TAIR (Arabidopsis)
Match: AT2G03440.1 (nodulin-related protein 1)

HSP 1 Score: 94.7 bits (234), Expect = 5.000e-20
Identity = 67/157 (42.68%), Postives = 87/157 (55.41%), Query Frame = 1


		  
Query: 9   HSEATTEETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKI 68
           H+E TT +      E TT +  + +      P + ++L+ASAK VAEAAQ A  ++SDK+
Sbjct: 33  HTEPTTHKPGH--GEPTTHKPVSNTDPTTHRPATNAELMASAKIVAEAAQAAARHESDKL 92

Query: 69  DKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEGGEKK---- 128
           DKAKV+ A  D+L+AA +YG LDEKSGVGQY+ KAE YLH    S  H   GG       
Sbjct: 93  DKAKVAGATADILDAASRYGKLDEKSGVGQYLEKAEQYLHKYETSHSHSSTGGTGSHGNV 152

Query: 129 ---------PEADEKKESGGGAAGLMD---MAKGFFK 150
                    P A ++ E  GG  G  D   MA+GF K
Sbjct: 153 GGHGGGAGAPAAKKEDEKSGGGHGFGDYAKMAQGFMK 187

[Close]

BLAST of Spo18844.1 vs. TAIR (Arabidopsis)
Match: AT1G13930.1 (Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress.)

HSP 1 Score: 93.2 bits (230), Expect = 1.500e-19
Identity = 65/147 (44.22%), Postives = 84/147 (57.14%), Query Frame = 1


		  
Query: 19  KILSEATTEET----PAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVS 78
           K LS +T EE     P +       P + ++L+ASAK VAEAAQ A  N+SDK+DK KV+
Sbjct: 9   KKLSSSTPEEPDHNKPVEGTETATRPATNAELMASAKVVAEAAQAAARNESDKLDKGKVA 68

Query: 79  EAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG---------GEKKP 138
            A+ D+L+AA+KYG  DEKS  GQY+ KAE YL++  +S      G            +P
Sbjct: 69  GASADILDAAEKYGKFDEKSSTGQYLDKAEKYLNDYESSHSTGAGGPPPPTSQAEPASQP 128

Query: 139 EADEKK---ESGGGAAGLMDMAKGFFK 150
           E   KK   ESGGG  G   MA+GF K
Sbjct: 129 EPAAKKDDEESGGGLGGYAKMAQGFLK 155

The following BLAST results are available for this feature:

BLAST of Spo18844.1 vs. NCBI nr
BLAST of Spo18844.1 vs. UniProtKB/TrEMBL
BLAST of Spo18844.1 vs. ExPASy Swiss-Prot
BLAST of Spo18844.1 vs. TAIR (Arabidopsis)

BLAST of Spo18844.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902231495\|gb\|KNA22276.1\|	1.8e-72	100.	hypothetical protein SOVF_0352...	[more]
gi\|537430792\|gb\|AGU69247.1\|	5.9e-31	67.9	salinity-induced protein [Sali...	[more]
gi\|731339253\|ref\|XP_010680752.1\|	5.0e-30	62.1	PREDICTED: uncharacterized pro...	[more]
gi\|870857434\|gb\|KMT08994.1\|	1.5e-29	64.8	hypothetical protein BVRB_6g13...	[more]
gi\|685350040\|ref\|XP_009110568.1\|	6.8e-19	46.4	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo18844.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RRU6_SPIOL	1.3e-72	100.	Uncharacterized protein OS=Spi...	[more]
T1YW73_9CARY	4.1e-31	67.9	Salinity-induced protein OS=Sa...	[more]
A0A0J8C9S4_BETVU	1.0e-29	64.8	Uncharacterized protein OS=Bet...	[more]
M4DJP1_BRARP	4.7e-19	46.4	Uncharacterized protein OS=Bra...	[more]
C6TMA8_SOYBN	1.4e-18	55.0	Uncharacterized protein OS=Gly...	[more]

BLAST of Spo18844.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo18844.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT2G03440.1	5.0e-20	42.6	nodulin-related protein 1	[more]
AT1G13930.1	1.5e-19	44.2	Involved in response to salt s...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35098	FAMILY NOT NAMED	coord: 11..129 score: 7.7
None	No IPR available	PANTHER	PTHR35098:SF1	SUBFAMILY NOT NAMED	coord: 11..129 score: 7.7