Spo18849.1 (mRNA) | SpinachBase

Overview


Name	Spo18849.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Hydroxyproline-rich glycoprotein
Location	chr2 : 48021594 .. 48031171 (+)
Sequence length	1655

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGCACCCAAATTGTAATCGTATAAACAAATTTAACATTCGAAATACAAATACCCCATACTCCAAATGTGGCAAATGCGGGAACGCATCTCCTTCCCCCTTCCTCCTCAGTCTTCCCGCATCTCCTTCCTTCTCCTCTCGAATCTCCTCCTCTTAAACCCTAACAACAAAACCAGCATCTTGTAGTTGTAGTCGGCGGCACCTCTGTCAACCACCTCTCCTCTGCTGCTGCTATTCTCGGTAATTATCTACAAGTATTTTTGTATTGATTTTTCTGTTGATTTTATTTGTATTTTTATTGATTATAATTCTCTTAATTGTCATATACATTGTGTTGGTTTTTAGTTAGCTTTGTTTTGATACGATTCTAATAAGATTGATTAGGATTAAAGATTCAATTTTTCTGATATGATGGGTTTCAAATTGTTAAATATATTCAGTTGGGTTAGTTTTGGTGTTGTTTTATGCCTAATTAGTGTATACCCACTTCATGATTCTACTTCACATTCGTATAATTCCACTTCATAATTCTACTTGGAATTCGCATAATCCTTTTTGATATGGTTTGATTTTTCTGACAATCACTGTTCATCTCTCTTGGCCCAGGGTGGGCGCCCCTCCTGCGCTAGCTCATGGACGGGACTGGACAGCATCAGCCTGGGTTATTAGCAGCTCCAACCACACCTCAAACTCAAACCTACTTGCATCCTCGCTTGGCCAATGCTTCAGATTCGATTCGATATCCATTAGCATCTACCGGTCGTGGATTGCTTCCGGCACCTAGAGGCATATTGCCTGATCCAGTGGCAAGTTCCATTGCCCCTAACTCGTGGGCTCTTCAGCAGTATCAACATCAGCACCATCACTCTCGATTGTCTGCTCCCTCTAGTCATCTTGTTCGCGGTCCTTTTTTGCATCCTTCTCAGGCTCATATATCACCTGTTTCATTCTCTGCTGCTGCTAGAGGCGTTCTATTCAACAATCGCCCTCAGACCATGGTTTCCTTTATTCCTTTCTTTTTCTTTCCTGCTGTCTTAACCTTTGTATATTTCTTAACTGTCTAAGCTCTAGGATTTGTTTTGTGATGCTATGTTGCTGCTTGTTTCATGGTTTTTTGGAAGCTTTTTTTTTAGAAGTTATAACTTTTTTCTGGTCGGAATGGGTCTTTTCTGGCTAGGTTTTATGGGTATTACATTGTCATATCACATGTGCCTCATTCGAGACCAAAATTCAACTATCCTGACTGGTCTGGTTTAAGGTGCAAAAGTGGGTAGACTGTTTGTGCACATAATTTCTTATTGAGGATTAAGGAGCCCTCATGCACACCAATGTGACCATTTTGGAACAACCTTTCTAATTTACTCTTTATATATCCATCTTAATTTTTGTTTTCTGGAACAATCTGTCTACTACTTTAGATTGTTGCGGTAGCACTGCATACTTATGGCCTATTATCTTCTCTTGTTCAGGTTGGTTCATCTCCCTACTCTGCTCCTGATAGTAATGATCCTAAAGATCCCATGTAAAACATCTACTCTGGCCTATTTCCTTCCTTGTGTGAACTTCGGTGTCATGGTTGCACACTTGTAGTTACGGTTCTTGTTTTGACTTGTGCAGAGACAAAGGTACTGATGATACGTTGGTCACTCTTAGAGATCGAAAGGTAAGGTTAAGGTCTACTATTCTCTTTAAGAATCATACTATAGATATTCATTGATTCCCAAGTTTCTTTAATAATTCATCTTTGCCGTGCATATTCCCTAAGAGATATCAATAATAATGAGAAATGTATGAGTAGTCTATATTATAATTTTTCCTGTCTTTTGGGGATGGAAGGAATTAACCTCTCGCTGATTTTTTTCCATTATATCGAAAGAACTGAAGTTCGTTACAGGTAATGAGCTGAAGCTCATGACACCAACTGAGCCAAGGCTAATAGCAACTAGCAAAACAGGGCTTCTAAAACCTTGTGACTCGATGCTTGTAATGTGCTAATGAGTGCATATTGTTTTATGTGTTGGTTTAATTTGTGCTCTAGGTACTTATTCTTGTGATTCAGGTGGCTTAAGTGTAGTTTGGAAGTTGAGCTGTTTATGGAAACTTTTCATGCTTCTGATATTTTATATAGTAATATTCACCTTGTCGTTTTGTTTGAATAATTTATATGCTTAAGGTGTGGCCTGGCTTGTTTTTTTACGTAGGTCTTTACAATGAAACAATTAGTACATATTCCCTCATTAGAAACATTGTCTTCTTGTGACTTACTGGAAGTCTGGAACTGATTCTGGATAAGTGCTTTAATAGTTTTGAGAGTGGAACCTATTCCTGCTATCAGATTACCTTTTCGGAGAACAGGTAGTTTGGAAGTTGTTGGGATGAGTTGAGAAGGTGTACGATTTTATTCATATTATTTTGTGGGGAATAGTTGGGTAAAGTGATGGACACTTGGACAGCAAGGGTTTTAGACTTACTTTTAGTCCCAGTGGAGCAAATCTTTTGTGTATCAGAGTGTGAATTTTGTTCTGAAATAGCAAACCAAAGTTATAATTACGAAAAGTTCAACACTCGAACCGTAAAGAATAAAGACCCACTCACTAAATTCAAGATAAAGACTCTGTGATTCTTTTATATTTTAACATAAATAACATAGTTCCTGGGCTAAGTTTTGGCTATCATAGACTATTAACCTCGGTATTGCGAAATGTCCTTATTTTTGAAAAATACAAAGTCTACACTAATTTTCATGTAAAAATTCCCGATGAATGGCTTATTTGTGCTTGTAATATGGACATGAGTGCACAGTGCTCCTTATGCACCAAAAAGCACCGATGCATATGAAAAAGAAAATCCAATATAACAATCTGTACCAGTGAGTTTAATGGTCCTTTATGTGAGAGAAGATGTGACCTCAAATCTACTTTTCTTTGGTTAACTAGGTTGAGCACAAAGTTGAAAATAAGAACACAACACTTTTCAGTGCACAAGGCTTGTTGACTTTGTTCCTCTTAAGAAACCAGGGTAGATGGCAAAAGATTTCTAAATTATGAGCTATTCACTATCATTGCGGTTCAACAATCTCCTCCTTACTAGAAGCAACTTTTACATGAAACCCTTCTCTTTAAAGCTGGTTTGACTTGTCAAGTTCCTCACTAACTTATTTCTTGTAGGATCATAGTATGCCTGTTATGGAAGTCACTTTGCACAGACTCATAACCATAACACTTGAAGCCATGCACCTTATCCATCTTGATCTCTTTTGTTGGTTTCTCATGCAAAGTTACTTCCTTGTCATCATTAGTCAAAGAATCAGATTTCGGTATACAGATTTTCATTGAAGAAGACTCCTTAATTAACCGTTTTACACGCTCGTGAACTTGCTTTCACAGTTTCAGGGCCAAAGTGCACAATTGCACATTCATCAAAACTCTTCCAAGGTAAGAGTACGCTGAAATACCAAATTATGAAATTTGGCTGATAAATATGAACTGATATAACCCAGTAAAGTAAATTCTACTTGTCAATACTTAAAGACTAGGCAATTATTACCCACTTTGATGTAAAGGATGGAGCACCCGCTTTGAGAAATTTAAAGATTACTATCTGTTGTATAACCGTTGACCTGTAAATAATTAAATTTAATTGGTCTTTTTCTGTTTTGTGATGTGTCAATAAGATCACTAATTCGAAATCTAGTTTACAACGCGAAAGTAACCGATATTTCTCCTTGTGGAACACTCCTGAACTCACAATTCGAATCCCCAAGCCTAGAAGATCATTCCTGAAGCCCCTAAGTATTAGATCTCTAAGTCCTAGAAACACTCCTGAATCTAAGCCTAGATTTACTTACGTCCAAACCACTCCTGAAATTCAATCCAAGCAACGAAAGAATAAAACTTTCAATTTAATTAAGCAAAGCTCGCGAATTTTACTTAATTCTCAAAAATCTGAATAATAGAAATTACAAGTCTTCACTATATAGGAGTATGACTAACAGTAGTCCTGTATAAATGGAACTCTAAAAAGCTATTCATAAAAGGTCTTAGGTAGATTTGTTTTAGCTTGTGTATTATTGCTGCAATTACGGTGTCTCGTGTGAAGAATTGTAATCGCATGCCAGGAATTTTGCAATGATAATGAAATACTGGCAACATATTATTAATGGCTCAAAGTGCAACACGTTTTGGGCTTGTAGTTGCAGTAGTATGTGTTTTCCAATTCAGCAAAATAACTTGATGATGAATTATTCTGACCCTTCACTTGGGATTATGCTGAAACGAGAAGGCATTTTAGTTGGTTGTTGTTAGAGAGTGCAAGTATGTTAAGGGCAGGTGTTTAGGTATGTGTTTCGATATATGTTCTTGTATTTGACTTATCCACTTGGCGTTTCAGCTTGTGCAGTTAGGTGTTTTCTGAAAATTTGCAGTGATTATAACTTGAAACCAAATCATGTTTTGGTCTTTCATCAGATTTCTACCCTAAGTCTCTCTTTGGATACTTTTTGTAGGTCAGGATATCAGACGGGGCATCACTGTATGCTCTCTGTCGGTCGTGGTTGAGGAATGGATGTGTAGAAGATAATCAAGTACGTAGCATTTGGTCATATCTACTGTTATTTTTATTATCTGTAGAATACAATTCATCTATGGAGCTTTCTAAATTCATGCAACCATATGCAGCTGACTTCTATATATCTGTGTATCTTGAAGCAATTGTTTGTTTGATCAAAACCATCTTTGGGTTCAGACTGGTAACAAATATTCCAAGTTTTTATATTTAACATAGGAGTTGCCATTTGTTGACATATACCCACAGACACACACATGGATAGCTTGTTGACATTCTTAATTAATAGGTCAGAAATGGAAGACTCAATTCTCCAACCGGACTGTCTACCTTACAAGAACTATTAACTTTCTTCCTCATTACTTGTCCAGTAAAACATGAAGGGTTTAGAATTAGAATGTACATAATATATCAGTATTTTATAGTTAAAAGTTTCATTTTTTTGGGCTAACATATGAATATATCAGCATAAGCAGATCACCTCCTCTCTGGTTCTCCACCTTCAAGTAGCTTATAGTTATAATCACAATACGATCATTGGAAAACACAAGTATACTAATCTTGTTCCATGCTAAGACTATTGAAGTACTTGTGACAAACTGAGTAAGATTGCTGGATTTTGATTCAACAAAGTTGAGGGAGGAGGCCCAAAAAATTGTTGAGAATTTGTTAATCACCTGTGCGGCTGTGCCTTGAGTGTGATTCTAAATTATAGAGGAGAAGAGCTTAACTATTATTTTTGTTTTTATAAAAATGGGAGCAGTAGGAAGATGAAAGGACAGATCGAGGAACAGAATCCCAACTTGTCCAATATGGAATGAGAGAAATCAAAAGCAGGAAAGAGAAATGGTCCTTTGACCACTTTAGGAAGGTGTGAATCATTATTTACCTTTTTTAAATAACATAGGTGTCATTATTTACCTTTTTTAAGTCGTAAGTCTTGTAACAGGTGTCAGACTTGTTATTTTCCTTTCCCTAAATCCTTCACTGTTCAGGTCCAAATTCAGTTCTGCTCCGGTTTGTGCTCACTCCCACTTTCAATTAGCAACTAGTTATAATCTCTATATGATCCTTGGCCATAGAATCATTATGCTGTTGGACGTTGAAGTAGCAATGAAACTATATGTTGCGTACTTGGTCAGAGTTCTTCTCTTTCATTTTTCTAAATTGTTTAAAAACTTGCAGCCACAGTATGGAGATGTTCTAAAGTCTCATCCGAAACCCTTTCATCTGCCTCTTCCTCTGCCTCCGCATGAATATTCCTCACCGAAGAGAAAGGAGAGAGATGATGAAACGGAAGTTGACGAGGTTGGTTGTTCTTTGACTGTAATATTAGTACTATTGTCTATTTTTCTTAATTATTCAAAACTGTTTAAGGGTGGTGTTTTGAGATTTTTCAATGTTTTTCTTTTTTCTTGTGCAAGGTCATAACTTCTACTCCCTCCGTCCACAAAGATTGCTCATACCCTTTGTTTCTTTTTTTGAAAAGTTGGTTCATTTAAAAGTGCGTGAAGCTCTCCACCCCCCCCCCCCCCCCNCCCCCCCCTTTTGTAGTTGCACATGGGTTGTTGAGTGGGGAAAAATCAATGGGACATCCATTTTAGGAACGTGGAGCAATCTTAGTGGGACGGAGGGAGTATATATGTGGAAGATGGTGTAACTTATCAATTCATTTTACTTGTTTAAAAGCAAGGTTCAGTTGGTAAGGTAATCAATAGCCTTTTGATGCCGTTCAATGTTAGCAGTATTCATGATAAATGATGTTGTTAGATCATTCACGATAAATTTTGGGTGGTAGAATTCATGACAAATATTGGTTATCTGTTAGAGTATTCATGATAAAACTTTGATGCCATAAGAGCATTCAAGATAACGTAGTATTGTGGTAGGTAGTATTAATTCTGCTTTTTTTCTTTTCTTTTCTGGATGGTAGTGTTACTAGTGTAGCCATGCATTACTTGGAATGCTGATATTTTTGACTTTTTTCTTTTTAGTTCTCTTTCATACTACGAAATTTTCTTCTGTTAGAATTGGAAAATTCCTGGTGGATACCATGAGTTCCAATGAAATTACAATGAGATACTTCAACATTTTATAAAATCTCTATCATCCCCTCCAATGTTTAAACTAGAGTCAGTAGCGTAGAGTTGTGAGAATTAGTTGAGAATGAGAAAGAAAGAGGGAGGGAGGGAGAATACTAACTTATAAAAACTTGAGAGTGCATCGTATGGCATCAAATGAGATGGCATTTATAGGACTTGTTACAAAGGATCCTTTTATTTTTGTGGTCGAGTTGCTTGGCGATTTGCTATCTCCTCTGGGCTCCGGGGGCTGCTGATTTATTTTTTCAATGTATTTTATGTTGGACTATTACTTGTAGCGTTGGGTAGGGCTTGAGTAGTTAAGTAATTCTTTTGGGCATTGGGTTGTGTCTTGTCTATTTTTCAGTTGAAAACAACTATTACTCTATTAGTGGTTTGAAGATGTGTCTCGTTTGTACTATTCTTTTGGACCAATTGTGGAATAGTAAGATAAGTGGATTTGGGCTGGCAACTCAATAAACACCCAAAAGAGTTGTGGTGGTTGTGTATGTGTGTTTATGTTTTACACTTTCTCCTAAATACTTATGCCCAGCTCAAATGGGAAGTTATTTGGGGAGGTAGGGAGGGAATGTCATTAAGGGATAAGTTGATTGTCATGATGTAACCCATTTTCAGGAGTCCTTATTCCACTATTTTTGCTTGCAGGACGAGAATTTAGTTGATATTTCAAATGCTCAAGAGTTGCTAACAAGCCATGTTAAGCAAGCTAAGAGAGTTCGAGCAAGGTATGTCCCTCCTGATTTTGTGTCGCCTGACATTGTTGTTTTTATTAGCTATGATTGAATCTTCAGTTGGAATTTTTCACATCAAATGCTATCTCTAAATCACCTGTACAGGCTCAATGTTGATAACCGTAGTATGAAACAGAGAAACTGTTATCTTGAATACAGTAGAAATGCAAACGTAAATCAAAAGAATTAATTAACATGCATATATTCATTGTATACTTTCTCCGTTTCTAGATAATTGCAACACTTTCTGTTTCTTTTATGTCCGAAAATTATTGCAATACCAAAATAACAAATTTGCCATTACATAACCAAACCACTAACATAATTAGAAAACCAAAAACTGAAAATAACCCTACCACAGCACTACCCCAACCAACTAACCCCCTTCTACCTTCTGTCCATGCCAACTAACCCCCAACTTTCCTCCCCTCTCTCTAATCCCGTCACCTACCATCCACCAGGCACCACCATCTTCTTTCCTCCCTTTCACTTGTTGCCAGCACTTCAAACCACCAACGAACACAGCCTCACGCCTTACCCTAGACAACAGTCCACTCCAAACTACAGCCACACCTATCGGAATGCTACAATTGAAACCACAACTAATATTTGTACTTCTGAGTTTTGATCACAAGTCCCCATAATTTGGCCAGCAAAGCTTTGAAACCTCTGGATATGATCACTGAAGGGTCAAATCTCAATTGTATGAAGATCAGCAGTAGCCACTAGGGAGTAGGGAGAGGCGAGAAAGCAGATGAGCAGAAGGGCGGTGATTCACCACATGAGATGAGAGAGAGAGTGGAAGGGAGGGCTTGTCAGTGGTGATCTAAGAGATAGGGGGAGGGGCATGCTGAGACGGGTGTGATTTGTGAAATATAGGAGGGCGGGCTTGGTGGGATTTAGGGGTCGTCGAGTGTGTGAATGACCCCTTACAACTTGCCCTACTTATGTGCTATGATTATTTAAAAAGCGTAGGAACTATGACTCAATGCAGTTGAAATAAAGTACAACTAGATCTAGAACAGAAGAATGAAAATGTGTTGGGGGGTGGGGGGGGGGGNGGGGGGGGGGAGAAAGCCCCTAAACATATCTCCTAAGCATATCTAATTACATCAAGAAAGAAAGTCTACATAGCTTCTTTGTACAAACAAGTAATTTCATTCCCATTTTCCGTTGTAACCGACCCCTAAATCAATATCCATGTGATCTTCCTTTAATCCTTCCAATGGGCTAAACTGTAACTTCCATACCCCTAAAGAAATTTAGACAGCATTTCCTACAAAAAAACAATGTTCCAATCAATTATTTTTTTTACTTCCAGTGGAATGTTAGTAATATTAGTAAATGTTAAACTTCGCATTTACCTTAGAGACATCTCTTCCCCTTGTTTATTTATTGCATTTGTAGGCTTATATAACTTTGAGCATATGAGCTAATTTGGTTAGAGGCTTAGAGCTTGCTACTGCCCAATGCTTATTACTAGGAGATGTGCATGTAATGTATGGATGGACCTTTTTGAACGTTTGCGCCTGTTTACAGATTAAGGGAAGAAAGATCACAACGCATTGAAAGATACAAAAGTAGACTTGCTCTTCTTCTTACACCTAACGGAGATGTGCAAAATCAGCAGGAATGATACAGTCCCTGGTCCCTGAGTAGTTGAGTACTACATAGCTAGTTTGTATGATTGATTTCTGGTTCCTGTTGCTTCCGTTCCTCCTGTAATATGTTACTAAAGGATGGGACGGCATCAGGTTTTGTAGATTAAGTTATGTCGCGAGTTTTGTTGTATGATTTTTCTTCAATGAGCAATCAGAGGTTTTGCCAACATTTTTCTTGGTTGGAAATATTGTTAAGAAGGGTAAGCTAAAGAGAAGTAGATTATTGTTATGTTGCTAATAGTTAGTTATTACTCGTAATAATTATTTTATGGGATATATTAATCCCACCGGGATATTTTTGGTAGAGGTCTCTCAGTTTGAGCAGAGTTGCTCACTTAATTGCTTATTGGTACTAGTCAACTGCTGGATCAAATAATTGTTCAATAATGAATCTAGTTGAAAGGAATAAAATCCTCCTACACAATTCTATCATTCTATGCACTTCTTTAATGATTAAAGAGTTATTGGATGAGCAGTAGAAACATGATTTGAGCACTTGTAATCTAGGAAATAGGAACAAG

mRNA sequence

GGTGCACCCAAATTGTAATCGTATAAACAAATTTAACATTCGAAATACAAATACCCCATACTCCAAATGTGGCAAATGCGGGAACGCATCTCCTTCCCCCTTCCTCCTCAGTCTTCCCGCATCTCCTTCCTTCTCCTCTCGAATCTCCTCCTCTTAAACCCTAACAACAAAACCAGCATCTTGTAGTTGTAGTCGGCGGCACCTCTGTCAACCACCTCTCCTCTGCTGCTGCTATTCTCGGGTGGGCGCCCCTCCTGCGCTAGCTCATGGACGGGACTGGACAGCATCAGCCTGGGTTATTAGCAGCTCCAACCACACCTCAAACTCAAACCTACTTGCATCCTCGCTTGGCCAATGCTTCAGATTCGATTCGATATCCATTAGCATCTACCGGTCGTGGATTGCTTCCGGCACCTAGAGGCATATTGCCTGATCCAGTGGCAAGTTCCATTGCCCCTAACTCGTGGGCTCTTCAGCAGTATCAACATCAGCACCATCACTCTCGATTGTCTGCTCCCTCTAGTCATCTTGTTCGCGGTCCTTTTTTGCATCCTTCTCAGGCTCATATATCACCTGTTTCATTCTCTGCTGCTGCTAGAGGCGTTCTATTCAACAATCGCCCTCAGACCATGGTTGGTTCATCTCCCTACTCTGCTCCTGATAGTAATGATCCTAAAGATCCCATAGACAAAGGTACTGATGATACGTTGGTCACTCTTAGAGATCGAAAGGTCAGGATATCAGACGGGGCATCACTGTATGCTCTCTGTCGGTCGTGGTTGAGGAATGGATGTGTAGAAGATAATCAACCACAGTATGGAGATGTTCTAAAGTCTCATCCGAAACCCTTTCATCTGCCTCTTCCTCTGCCTCCGCATGAATATTCCTCACCGAAGAGAAAGGAGAGAGATGATGAAACGGAAGTTGACGAGGACGAGAATTTAGTTGATATTTCAAATGCTCAAGAGTTGCTAACAAGCCATGTTAAGCAAGCTAAGAGAGTTCGAGCAAGATTAAGGGAAGAAAGATCACAACGCATTGAAAGATACAAAAGTAGACTTGCTCTTCTTCTTACACCTAACGGAGATGTGCAAAATCAGCAGGAATGATACAGTCCCTGGTCCCTGAGTAGTTGAGTACTACATAGCTAGTTTGTATGATTGATTTCTGGTTCCTGTTGCTTCCGTTCCTCCTGTAATATGTTACTAAAGGATGGGACGGCATCAGGTTTTGTAGATTAAGTTATGTCGCGAGTTTTGTTGTATGATTTTTCTTCAATGAGCAATCAGAGGTTTTGCCAACATTTTTCTTGGTTGGAAATATTGTTAAGAAGGGTAAGCTAAAGAGAAGTAGATTATTGTTATGTTGCTAATAGTTAGTTATTACTCGTAATAATTATTTTATGGGATATATTAATCCCACCGGGATATTTTTGGTAGAGGTCTCTCAGTTTGAGCAGAGTTGCTCACTTAATTGCTTATTGGTACTAGTCAACTGCTGGATCAAATAATTGTTCAATAATGAATCTAGTTGAAAGGAATAAAATCCTCCTACACAATTCTATCATTCTATGCACTTCTTTAATGATTAAAGAGTTATTGGATGAGCAGTAGAAACATGATTTGAGCACTTGTAATCTAGGAAATAGGAACAAG

Coding sequence (CDS)

ATGGACGGGACTGGACAGCATCAGCCTGGGTTATTAGCAGCTCCAACCACACCTCAAACTCAAACCTACTTGCATCCTCGCTTGGCCAATGCTTCAGATTCGATTCGATATCCATTAGCATCTACCGGTCGTGGATTGCTTCCGGCACCTAGAGGCATATTGCCTGATCCAGTGGCAAGTTCCATTGCCCCTAACTCGTGGGCTCTTCAGCAGTATCAACATCAGCACCATCACTCTCGATTGTCTGCTCCCTCTAGTCATCTTGTTCGCGGTCCTTTTTTGCATCCTTCTCAGGCTCATATATCACCTGTTTCATTCTCTGCTGCTGCTAGAGGCGTTCTATTCAACAATCGCCCTCAGACCATGGTTGGTTCATCTCCCTACTCTGCTCCTGATAGTAATGATCCTAAAGATCCCATAGACAAAGGTACTGATGATACGTTGGTCACTCTTAGAGATCGAAAGGTCAGGATATCAGACGGGGCATCACTGTATGCTCTCTGTCGGTCGTGGTTGAGGAATGGATGTGTAGAAGATAATCAACCACAGTATGGAGATGTTCTAAAGTCTCATCCGAAACCCTTTCATCTGCCTCTTCCTCTGCCTCCGCATGAATATTCCTCACCGAAGAGAAAGGAGAGAGATGATGAAACGGAAGTTGACGAGGACGAGAATTTAGTTGATATTTCAAATGCTCAAGAGTTGCTAACAAGCCATGTTAAGCAAGCTAAGAGAGTTCGAGCAAGATTAAGGGAAGAAAGATCACAACGCATTGAAAGATACAAAAGTAGACTTGCTCTTCTTCTTACACCTAACGGAGATGTGCAAAATCAGCAGGAATGA

Protein sequence

MDGTGQHQPGLLAAPTTPQTQTYLHPRLANASDSIRYPLASTGRGLLPAPRGILPDPVASSIAPNSWALQQYQHQHHHSRLSAPSSHLVRGPFLHPSQAHISPVSFSAAARGVLFNNRPQTMVGSSPYSAPDSNDPKDPIDKGTDDTLVTLRDRKVRISDGASLYALCRSWLRNGCVEDNQPQYGDVLKSHPKPFHLPLPLPPHEYSSPKRKERDDETEVDEDENLVDISNAQELLTSHVKQAKRVRARLREERSQRIERYKSRLALLLTPNGDVQNQQE

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo18849	Spo18849	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo18849.1	Spo18849.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18849.1.exon.1	Spo18849.1.exon.1	exon
Spo18849.1.exon.2	Spo18849.1.exon.2	exon
Spo18849.1.exon.3	Spo18849.1.exon.3	exon
Spo18849.1.exon.4	Spo18849.1.exon.4	exon
Spo18849.1.exon.5	Spo18849.1.exon.5	exon
Spo18849.1.exon.6	Spo18849.1.exon.6	exon
Spo18849.1.exon.7	Spo18849.1.exon.7	exon
Spo18849.1.exon.8	Spo18849.1.exon.8	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18849.1.utr5p.1	Spo18849.1.utr5p.1	five_prime_UTR
Spo18849.1.utr5p.2	Spo18849.1.utr5p.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18849.1.CDS.1	Spo18849.1.CDS.1	CDS
Spo18849.1.CDS.2	Spo18849.1.CDS.2	CDS
Spo18849.1.CDS.3	Spo18849.1.CDS.3	CDS
Spo18849.1.CDS.4	Spo18849.1.CDS.4	CDS
Spo18849.1.CDS.5	Spo18849.1.CDS.5	CDS
Spo18849.1.CDS.6	Spo18849.1.CDS.6	CDS
Spo18849.1.CDS.7	Spo18849.1.CDS.7	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18849.1.utr3p.1	Spo18849.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo18849.1 vs. NCBI nr
Match: gi|902162695|gb|KNA06718.1| (hypothetical protein SOVF_178440 [Spinacia oleracea])

HSP 1 Score: 541.6 bits (1394), Expect = 8.200e-151
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 1


		  
Query: 9   PGLLAAPTTPQTQTYLHPRLANASDSIRYPLASTGRGLLPAPRGILPDPVASSIAPNSWA 68
           PGLLAAPTTPQTQTYLHPRLANASDSIRYPLASTGRGLLPAPRGILPDPVASSIAPNSWA
Sbjct: 2   PGLLAAPTTPQTQTYLHPRLANASDSIRYPLASTGRGLLPAPRGILPDPVASSIAPNSWA 61

Query: 69  LQQYQHQHHHSRLSAPSSHLVRGPFLHPSQAHISPVSFSAAARGVLFNNRPQTMVGSSPY 128
           LQQYQHQHHHSRLSAPSSHLVRGPFLHPSQAHISPVSFSAAARGVLFNNRPQTMVGSSPY
Sbjct: 62  LQQYQHQHHHSRLSAPSSHLVRGPFLHPSQAHISPVSFSAAARGVLFNNRPQTMVGSSPY 121

Query: 129 SAPDSNDPKDPIDKGTDDTLVTLRDRKVRISDGASLYALCRSWLRNGCVEDNQPQYGDVL 188
           SAPDSNDPKDPIDKGTDDTLVTLRDRKVRISDGASLYALCRSWLRNGCVEDNQPQYGDVL
Sbjct: 122 SAPDSNDPKDPIDKGTDDTLVTLRDRKVRISDGASLYALCRSWLRNGCVEDNQPQYGDVL 181

Query: 189 KSHPKPFHLPLPLPPHEYSSPKRKERDDETEVDEDENLVDISNAQELLTSHVKQAKRVRA 248
           KSHPKPFHLPLPLPPHEYSSPKRKERDDETEVDEDENLVDISNAQELLTSHVKQAKRVRA
Sbjct: 182 KSHPKPFHLPLPLPPHEYSSPKRKERDDETEVDEDENLVDISNAQELLTSHVKQAKRVRA 241

Query: 249 RLREERSQRIERYKSRLALLLTPNGDVQNQQE 281
           RLREERSQRIERYKSRLALLLTPNGDVQNQQE
Sbjct: 242 RLREERSQRIERYKSRLALLLTPNGDVQNQQE 273

[Close]

BLAST of Spo18849.1 vs. NCBI nr
Match: gi|731350598|ref|XP_010686585.1| (PREDICTED: uncharacterized protein LOC104900777 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 244.2 bits (622), Expect = 2.700e-61
Identity = 155/270 (57.41%), Postives = 172/270 (63.70%), Query Frame = 1


		  
Query: 8   QPGLLAAPTTPQTQTYLHPRLANASDSIRYPLASTGRGLLPAPRGILPDPVASSIAPNSW 67
           QP    APT+ Q+QT            IRYPLAS+GRG+L         P      PNS 
Sbjct: 60  QPVPFTAPTSIQSQT----------QPIRYPLASSGRGIL---------PTIGCTRPNSS 119

Query: 68  ALQQYQHQHHHSRLSAPSSHLVRGPFLHPSQAHISPVSFSAAARGVLFNNRPQTMVGSSP 127
             QQYQHQ         S+HL+    L P  AHISP    A AR +  NN PQ+  GSSP
Sbjct: 120 QHQQYQHQ--------SSAHLL----LRPLNAHISPA--PAVARPIPLNNPPQSKAGSSP 179

Query: 128 YSAPDSNDPKDPIDKGTDDTLVTLRDRKVRISDGASLYALCRSWLRNGCVEDNQPQYGDV 187
           Y   DS+D KDP+DKGTDD LVTLRDRKVRI+DGAS YALCRSWLRNG VE+NQPQYGD+
Sbjct: 180 YFIADSSDSKDPLDKGTDDMLVTLRDRKVRITDGASFYALCRSWLRNGYVEENQPQYGDI 239

Query: 188 LKSHPKPFHLPLPLPPHEYSSPKRKERDDETEVDEDENLVDISNAQELLTSHVKQAKRVR 247
                    LP PLP  E  SPKRKE DDETEVDE E L    NA+ELL+ HV++AKRVR
Sbjct: 240 FSR-----SLPKPLPLPESFSPKRKECDDETEVDEAEKL---GNAEELLSMHVRRAKRVR 288

Query: 248 ARLREERSQRIERYKSRLALLL-TPNGDVQ 277
            RLREER QRIERYKSRL LLL  PNG  Q
Sbjct: 300 TRLREERLQRIERYKSRLGLLLHPPNGTTQ 288

[Close]

BLAST of Spo18849.1 vs. NCBI nr
Match: gi|731415441|ref|XP_010659555.1| (PREDICTED: SH3 domain-containing protein C23A1.17 [Vitis vinifera])

HSP 1 Score: 174.9 bits (442), Expect = 2.000e-40
Identity = 120/264 (45.45%), Postives = 155/264 (58.71%), Query Frame = 1


		  
Query: 25  HPRLANASD---SIRYPLASTGRGLLPAP-RGILPDPVASSIA-------PNSWALQQYQ 84
           +P+LA   D    I YP+AS+GRG +P P R    D    ++A       P S A     
Sbjct: 75  NPQLAKPHDPPQGILYPVASSGRGFIPKPLRPQSSDHNTVTVANPGAAFPPRSAATAAAA 134

Query: 85  HQHHHSRLSAPSS------HLVRGPFLHPSQAHISPVSFSAAARGVLFNNRPQTMVGSSP 144
             H       P S      H +R P L PS   ++ V  SA  +G+  +  P+  V  SP
Sbjct: 135 FSHQARPFGFPQSDLNYPVHSMRMPHLLPSHVGVTAVPGSAPIKGIPVSAHPK--VAPSP 194

Query: 145 YSAPDSNDPKDPIDKGTDDTLVTLRDRKVRISDGASLYALCRSWLRNGCVEDNQPQYGDV 204
            S  D N  KD  D+  DDT VT+RDRKVRISDGAS+YALCRSWLRNG  E+ QPQ+ D 
Sbjct: 195 PSVSDCNGYKDSRDRNRDDTFVTVRDRKVRISDGASIYALCRSWLRNGFSEETQPQHYDS 254

Query: 205 LKSHPKPFHLPLPLPPHEYSSPKRKERDDETEVDEDENLVDISNAQELLTSHVKQAKRVR 264
           +KS P+    PLP+P  + + PK+KE D+E   +EDE  V+    Q+LL  H+K+AK+VR
Sbjct: 255 MKSLPR----PLPIPVTDPNLPKKKEDDEE---EEDEGSVENLLPQDLLQRHIKRAKKVR 314

Query: 265 ARLREERSQRIERYKSRLALLLTP 272
           ARLRE+R +RI RYK+RLALLL P
Sbjct: 315 ARLREQRLKRIARYKTRLALLLPP 329

[Close]

BLAST of Spo18849.1 vs. NCBI nr
Match: gi|1009106179|ref|XP_015873160.1| (PREDICTED: uncharacterized protein LOC107410261 [Ziziphus jujuba])

HSP 1 Score: 166.0 bits (419), Expect = 9.400e-38
Identity = 126/294 (42.86%), Postives = 163/294 (55.44%), Query Frame = 1


		  
Query: 7   HQPGLLAAPTTPQTQTYLHPRL--------ANASDSIRYPLASTGRGLLPAPRGILPDPV 66
           HQP L AA T P      + +L        ++ +  I YPLAS+GRG +P  + + P PV
Sbjct: 71  HQP-LYAAQTLPIASPNPNFQLPAKPPNDPSSPAHPISYPLASSGRGFVP--KAVRPVPV 130

Query: 67  ASSIA-----PNSWALQQY-----------QHQHHHSRLSAPSSHLVRGPFLHPSQAHIS 126
            S  A     P  +  +             QH  H + L  P  +L       P Q    
Sbjct: 131 ISDQAVTVANPGGYPPRPVVNFHHGVDGVRQHLDHAAHLMRPPHNLQHHHHYLPHQQVHR 190

Query: 127 PVSFSAAA--RGVLFNNRPQTMVGSSPYSAPDSNDPKDPIDKGTDDTLVTLRDRKVRISD 186
           P   SAA   +GV  +   +    + P S PDSN  KD  DK  DDTL  +RDRKVRI++
Sbjct: 191 PHLGSAAVPVKGVPVSAHLKV---APPSSVPDSNGYKDSRDKSRDDTLAIIRDRKVRITE 250

Query: 187 GASLYALCRSWLRNGCVEDNQPQYGDVLKSHPKPFHLPLPLPPHEYSSPKRKERDDETEV 246
           GASLYALCRSWLRNG  E++QPQYGD ++S PK    P P+       PK+KE +++ E 
Sbjct: 251 GASLYALCRSWLRNGAPEESQPQYGDAVRSLPK----PSPIHMTNTDLPKKKEGEEDGEQ 310

Query: 247 DE---DENLVDISNAQELLTSHVKQAKRVRARLREERSQRIERYKSRLALLLTP 272
           +E   DE  V+  ++QELL  HVK+AK++RARLREER +RI RYKSRLALLL P
Sbjct: 311 EEEVKDEESVEHLSSQELLKRHVKRAKKIRARLREERLKRIARYKSRLALLLPP 354

[Close]

BLAST of Spo18849.1 vs. NCBI nr
Match: gi|720084883|ref|XP_010243354.1| (PREDICTED: leucine-rich repeat extensin-like protein 5 [Nelumbo nucifera])

HSP 1 Score: 164.9 bits (416), Expect = 2.100e-37
Identity = 114/276 (41.30%), Postives = 145/276 (52.54%), Query Frame = 1


		  
Query: 10  GLLAAPTTPQTQTYLHPRLANASDSIRYPLASTGRGLLPAPRGILPDPVASSIA------ 69
           G  + P  P     +          I YP+AS+GRG +P  +   P PV   +       
Sbjct: 55  GKTSNPNPPAQMAKIQDPSVPPPQGILYPVASSGRGFIP--KSFRPQPVDQLVTVANPGG 114

Query: 70  --PNS---WALQQYQHQHHHSRLSAPSSHLVRGPFLHPSQAHISPVSFSAAARGVLFNNR 129
             P S   +A Q              + HL+R P + P   H+ P    A   G    + 
Sbjct: 115 FPPRSVVAFANQVRPFSFPPGDPQVQAVHLMRPPHMQPP--HLGPRHIGATVSGPPIKSI 174

Query: 130 PQTM---VGSSPYSAPDSNDPKDPIDKGTDDTLVTLRDRKVRISDGASLYALCRSWLRNG 189
           P  +       P S  D N  K+  D+  DDT+VT+ DRKVR+SDGASLYALCRSW+RNG
Sbjct: 175 PLVVHPKAAQFPSSTSDFNGYKELRDRSRDDTVVTIHDRKVRLSDGASLYALCRSWVRNG 234

Query: 190 CVEDNQPQYGDVLKSHPKPFHLPLPLPPHEYSSPKRKERDDETEVDEDENLVDISNAQEL 249
             +++QPQ+G+ +K  P+    PLP    E   PK+ E DDE E  EDE  V+  +AQEL
Sbjct: 235 LPQESQPQFGEGVKLLPR----PLPTSISEIPLPKKTEGDDEDEKKEDEGSVEELSAQEL 294

Query: 250 LTSHVKQAKRVRARLREERSQRIERYKSRLALLLTP 272
           L  HVK AK+VRARLREER QRI RYK RLALLL P
Sbjct: 295 LQRHVKHAKKVRARLREERLQRIARYKQRLALLLPP 322

[Close]

BLAST of Spo18849.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJ54_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_178440 PE=4 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 5.700e-151
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 1


		  
Query: 9   PGLLAAPTTPQTQTYLHPRLANASDSIRYPLASTGRGLLPAPRGILPDPVASSIAPNSWA 68
           PGLLAAPTTPQTQTYLHPRLANASDSIRYPLASTGRGLLPAPRGILPDPVASSIAPNSWA
Sbjct: 2   PGLLAAPTTPQTQTYLHPRLANASDSIRYPLASTGRGLLPAPRGILPDPVASSIAPNSWA 61

Query: 69  LQQYQHQHHHSRLSAPSSHLVRGPFLHPSQAHISPVSFSAAARGVLFNNRPQTMVGSSPY 128
           LQQYQHQHHHSRLSAPSSHLVRGPFLHPSQAHISPVSFSAAARGVLFNNRPQTMVGSSPY
Sbjct: 62  LQQYQHQHHHSRLSAPSSHLVRGPFLHPSQAHISPVSFSAAARGVLFNNRPQTMVGSSPY 121

Query: 129 SAPDSNDPKDPIDKGTDDTLVTLRDRKVRISDGASLYALCRSWLRNGCVEDNQPQYGDVL 188
           SAPDSNDPKDPIDKGTDDTLVTLRDRKVRISDGASLYALCRSWLRNGCVEDNQPQYGDVL
Sbjct: 122 SAPDSNDPKDPIDKGTDDTLVTLRDRKVRISDGASLYALCRSWLRNGCVEDNQPQYGDVL 181

Query: 189 KSHPKPFHLPLPLPPHEYSSPKRKERDDETEVDEDENLVDISNAQELLTSHVKQAKRVRA 248
           KSHPKPFHLPLPLPPHEYSSPKRKERDDETEVDEDENLVDISNAQELLTSHVKQAKRVRA
Sbjct: 182 KSHPKPFHLPLPLPPHEYSSPKRKERDDETEVDEDENLVDISNAQELLTSHVKQAKRVRA 241

Query: 249 RLREERSQRIERYKSRLALLLTPNGDVQNQQE 281
           RLREERSQRIERYKSRLALLLTPNGDVQNQQE
Sbjct: 242 RLREERSQRIERYKSRLALLLTPNGDVQNQQE 273

[Close]

BLAST of Spo18849.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BT56_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g184170 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.900e-61
Identity = 155/270 (57.41%), Postives = 172/270 (63.70%), Query Frame = 1


		  
Query: 8   QPGLLAAPTTPQTQTYLHPRLANASDSIRYPLASTGRGLLPAPRGILPDPVASSIAPNSW 67
           QP    APT+ Q+QT            IRYPLAS+GRG+L         P      PNS 
Sbjct: 60  QPVPFTAPTSIQSQT----------QPIRYPLASSGRGIL---------PTIGCTRPNSS 119

Query: 68  ALQQYQHQHHHSRLSAPSSHLVRGPFLHPSQAHISPVSFSAAARGVLFNNRPQTMVGSSP 127
             QQYQHQ         S+HL+    L P  AHISP    A AR +  NN PQ+  GSSP
Sbjct: 120 QHQQYQHQ--------SSAHLL----LRPLNAHISPA--PAVARPIPLNNPPQSKAGSSP 179

Query: 128 YSAPDSNDPKDPIDKGTDDTLVTLRDRKVRISDGASLYALCRSWLRNGCVEDNQPQYGDV 187
           Y   DS+D KDP+DKGTDD LVTLRDRKVRI+DGAS YALCRSWLRNG VE+NQPQYGD+
Sbjct: 180 YFIADSSDSKDPLDKGTDDMLVTLRDRKVRITDGASFYALCRSWLRNGYVEENQPQYGDI 239

Query: 188 LKSHPKPFHLPLPLPPHEYSSPKRKERDDETEVDEDENLVDISNAQELLTSHVKQAKRVR 247
                    LP PLP  E  SPKRKE DDETEVDE E L    NA+ELL+ HV++AKRVR
Sbjct: 240 FSR-----SLPKPLPLPESFSPKRKECDDETEVDEAEKL---GNAEELLSMHVRRAKRVR 288

Query: 248 ARLREERSQRIERYKSRLALLL-TPNGDVQ 277
            RLREER QRIERYKSRL LLL  PNG  Q
Sbjct: 300 TRLREERLQRIERYKSRLGLLLHPPNGTTQ 288

[Close]

BLAST of Spo18849.1 vs. UniProtKB/TrEMBL
Match: A0A061E3E3_THECC (Hydroxyproline-rich glycoprotein family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_005945 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.500e-34
Identity = 99/237 (41.77%), Postives = 140/237 (59.07%), Query Frame = 1


		  
Query: 35  IRYPLASTGRGLLPAPRGILPDPVASSIAPNSWALQQYQHQHHHSRLSAPSSHLVRGPFL 94
           + YP+AS+GRG LP      P      + P  +    + H HH +    PS         
Sbjct: 49  VMYPVASSGRGFLPTNHPCRP------LLP--YHHHPHPHPHHFANPRPPS--------- 108

Query: 95  HPSQAHISPVSFSAAARGVLFNNRPQTMVGSSPYSAPDSNDPKDPIDKGTDDTLVTLRDR 154
            PS +   P  F    + +  +  P+  V  SP S  ++N  K+  D+  DD+LV +RDR
Sbjct: 109 -PSLSLPHPTHFHPPLKALSLSLHPK--VAPSPSSLSETNGYKNVRDRTKDDSLVNVRDR 168

Query: 155 KVRISDGASLYALCRSWLRNGCVEDNQPQYGDVLKSHPKPFHLPLPLPPHEYSSPKRKER 214
           KVRI+DGAS+YALCRSWLRNG  ++ QPQYGDV KS P+P  LP+P+  +     + +E 
Sbjct: 169 KVRITDGASVYALCRSWLRNGFPDETQPQYGDVSKSLPQP--LPIPVTDNLLKDTEDEEE 228

Query: 215 DDETEVDEDENLVDISNAQELLTSHVKQAKRVRARLREERSQRIERYKSRLALLLTP 272
            ++ +  EDE  V+  +AQ+LL  H+ +AK+VR+RLR+ER +RI RYK+RLALLL P
Sbjct: 229 QEQEDKKEDEQSVENLSAQDLLKRHIDRAKKVRSRLRQERLKRIARYKTRLALLLPP 263

[Close]

BLAST of Spo18849.1 vs. UniProtKB/TrEMBL
Match: A0A0V0I3K0_SOLCH (Putative mucin-2-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.800e-34
Identity = 109/266 (40.98%), Postives = 145/266 (54.51%), Query Frame = 1


		  
Query: 11  LLAAPTTPQTQTYLHPRLANASDSIRYPLASTGRGLLPAPRGILPDPVASSIAPN-SWAL 70
           L+  P  P +Q +LH        SI YP+AS+GRG L  P      PV S +    ++ L
Sbjct: 78  LVLKPPNPDSQPHLH--------SILYPVASSGRGFLSKPSNYPXRPVVSHLGSRPTFGL 137

Query: 71  QQYQHQHHHSRLSAPS--SHLVRG--PFLHPSQAHISPVSFSAAARGVLFNNRPQTMVGS 130
            Q       S    PS   H + G  P ++ +    S      A +G    +     + S
Sbjct: 138 NQMDPGLGQSTGVRPSHLQHALLGSSPTVNSAGPAASAGVLPGAVKGFPVVSSSHHKIAS 197

Query: 131 SPYSAPDSNDPKDPIDKGTDDTLVTLRDRKVRISDGASLYALCRSWLRNGCVEDNQPQYG 190
           +  S  D N  ++  D+  DDT   +RDRKVRISD ASLY LCRSWLRNG  +D Q QY 
Sbjct: 198 TQPSLSDCNGFREKRDRSKDDTFAIIRDRKVRISDNASLYTLCRSWLRNGLPDDTQSQYM 257

Query: 191 DVLKSHPKPFHLPLPLPPHEYSSPKRKERDDETEVDEDENLVDISNAQELLTSHVKQAKR 250
           D ++S P+    PL L P +  SP +KE D E E +  E++  +S  +ELL  HVK+AKR
Sbjct: 258 DGVRSLPR----PLALAPQDAESPVKKEGDKEEEXEAGESVEHLS-PKELLQRHVKRAKR 317

Query: 251 VRARLREERSQRIERYKSRLALLLTP 272
           +R+RLREER +RI RYK+RLALLL P
Sbjct: 318 IRSRLREERLRRIARYKTRLALLLPP 330

[Close]

BLAST of Spo18849.1 vs. UniProtKB/TrEMBL
Match: A0A061DWJ9_THECC (Hydroxyproline-rich glycoprotein family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_005945 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.700e-33
Identity = 100/238 (42.02%), Postives = 139/238 (58.40%), Query Frame = 1


		  
Query: 35  IRYPLASTGRGLLPAPRGILPDPVASSIAPNSWALQQYQHQHHHSRLSAPSSHLVRGPFL 94
           + YP+AS+GRG LP      P      + P  +    + H HH +    PS         
Sbjct: 49  VMYPVASSGRGFLPTNHPCRP------LLP--YHHHPHPHPHHFANPRPPS--------- 108

Query: 95  HPSQAHISPVSFSAAARGVLFNNRPQTMVGSSPYSAPDSNDPKDPIDKGTDDTLVTLRDR 154
            PS +   P  F    + +  +  P+  V  SP S  ++N  K+  D+  DD+LV +RDR
Sbjct: 109 -PSLSLPHPTHFHPPLKALSLSLHPK--VAPSPSSLSETNGYKNVRDRTKDDSLVNVRDR 168

Query: 155 KVRISDGASLYALCRSWLRNGCV-EDNQPQYGDVLKSHPKPFHLPLPLPPHEYSSPKRKE 214
           KVRI+DGAS+YALCRSWLRNG   E  QPQYGDV KS P+P  LP+P+  +     + +E
Sbjct: 169 KVRITDGASVYALCRSWLRNGFPDETQQPQYGDVSKSLPQP--LPIPVTDNLLKDTEDEE 228

Query: 215 RDDETEVDEDENLVDISNAQELLTSHVKQAKRVRARLREERSQRIERYKSRLALLLTP 272
             ++ +  EDE  V+  +AQ+LL  H+ +AK+VR+RLR+ER +RI RYK+RLALLL P
Sbjct: 229 EQEQEDKKEDEQSVENLSAQDLLKRHIDRAKKVRSRLRQERLKRIARYKTRLALLLPP 264

[Close]

BLAST of Spo18849.1 vs. TAIR (Arabidopsis)
Match: AT2G32840.1 (proline-rich family protein)

HSP 1 Score: 123.6 bits (309), Expect = 1.900e-28
Identity = 101/249 (40.56%), Postives = 136/249 (54.62%), Query Frame = 1


		  
Query: 34  SIRYPLASTGRGLLPAP----RGILPDPVASSIAPNSWALQQYQHQHHHSRLSA---PSS 93
           S+ YP  S+GRG    P       + DPV S  +P  +  +   + +HH +  +   P +
Sbjct: 96  SLIYPFGSSGRGFPTRPVRQNSNSVADPVGSP-SPGGYTPRGPVYGYHHGQFVSNLDPMN 155

Query: 94  HLVRGPFLHPSQAHISPVSFSAAARGVLFNNRPQTMVGSSPYSAPDSNDPKDPIDKGTDD 153
             +R    HP Q   SP   S   +GV    +P+     SP S  D++  K    +  DD
Sbjct: 156 QFMRAA--HP-QNQQSPQLGSGHMKGVPHFLQPRAT--PSPTSILDNSGHKKA--RSRDD 215

Query: 154 TLVTLRDRKVRISDGASLYALCRSWLRNGCVEDNQPQYGDVLKSHPKPFHLPLPLPPHEY 213
            LV +R RKVRI++GASLY+LCRSWLRNG  E  +PQ  D++   PK    PLP+   E 
Sbjct: 216 ALVLVRKRKVRITEGASLYSLCRSWLRNGAHEGIKPQRIDMMTCLPK----PLPVDKTET 275

Query: 214 SSPKRKERDDETEVD-EDENLVDISNAQELLTSHVKQAKRVRARLREERSQRIERYKSRL 273
           S PK    +   E D EDE  V   +  +LL  H+ +AK+VRARLREER +RI RYK+RL
Sbjct: 276 SLPKDLVEEAICEEDKEDEESVKHLSESDLLKRHIDRAKKVRARLREERLKRIARYKARL 332

Query: 274 ALLLTPNGD 275
           ALLL P G+
Sbjct: 336 ALLLPPFGE 332

[Close]

BLAST of Spo18849.1 vs. TAIR (Arabidopsis)
Match: AT1G04930.2 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 95.5 bits (236), Expect = 5.500e-20
Identity = 60/134 (44.78%), Postives = 84/134 (62.69%), Query Frame = 1


		  
Query: 142 KGTDDTLVTLRDRKVRISDGAS-LYALCRSWLRNGCVEDNQPQYGDVLKSHPKPFHLPLP 201
           +  D  L  +R RKVRI++G+S LY+L RSWL+NG     QPQ   ++K  PKP  LP+ 
Sbjct: 231 RSKDGALAVVRGRKVRITEGSSSLYSLGRSWLKNGAHVGIQPQRSGIMKPLPKP--LPVD 290

Query: 202 LPPHEYSSPKRKERDDETEVDEDENLVDISNAQELLTSHVKQAKRVRARLREERSQRIER 261
           L   E S P   + +   E  EDE  V   + ++LL  H+++AK+VRA+LREERS+RI R
Sbjct: 291 LTT-ETSVPDDPDEESADEDKEDEEAVKQLSEKDLLKRHIERAKKVRAQLREERSRRIRR 350

Query: 262 YKSRLALLLTPNGD 275
           YK R+ L+L  + D
Sbjct: 351 YKERITLILAQSED 361

The following BLAST results are available for this feature:

BLAST of Spo18849.1 vs. NCBI nr
BLAST of Spo18849.1 vs. UniProtKB/TrEMBL
BLAST of Spo18849.1 vs. ExPASy Swiss-Prot
BLAST of Spo18849.1 vs. TAIR (Arabidopsis)

BLAST of Spo18849.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902162695\|gb\|KNA06718.1\|	8.2e-151	100.	hypothetical protein SOVF_1784...	[more]
gi\|731350598\|ref\|XP_010686585.1\|	2.7e-61	57.4	PREDICTED: uncharacterized pro...	[more]
gi\|731415441\|ref\|XP_010659555.1\|	2.0e-40	45.4	PREDICTED: SH3 domain-containi...	[more]
gi\|1009106179\|ref\|XP_015873160.1\|	9.4e-38	42.8	PREDICTED: uncharacterized pro...	[more]
gi\|720084883\|ref\|XP_010243354.1\|	2.1e-37	41.3	PREDICTED: leucine-rich repeat...	[more]

BLAST of Spo18849.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QJ54_SPIOL	5.7e-151	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BT56_BETVU	1.9e-61	57.4	Uncharacterized protein OS=Bet...	[more]
A0A061E3E3_THECC	1.5e-34	41.7	Hydroxyproline-rich glycoprote...	[more]
A0A0V0I3K0_SOLCH	9.8e-34	40.9	Putative mucin-2-like OS=Solan...	[more]
A0A061DWJ9_THECC	3.7e-33	42.0	Hydroxyproline-rich glycoprote...	[more]

BLAST of Spo18849.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo18849.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT2G32840.1	1.9e-28	40.5	proline-rich family protein	[more]
AT1G04930.2	5.5e-20	44.7	hydroxyproline-rich glycoprote...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028226	Protein LIN37	PFAM	PF15306	LIN37	coord: 148..268 score: 3.4
None	No IPR available	PANTHER	PTHR37173	FAMILY NOT NAMED	coord: 10..274 score: 1.5
None	No IPR available	PANTHER	PTHR37173:SF1	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN	coord: 10..274 score: 1.5

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
cellular_component	GO:0017053	transcriptional repressor complex