Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTCGTACTCCGTGAGTCCGTGGTATAAATATAGAGGAACACAACACGATGGAGATTTAAGATTTCATAATCTAAGCTCATTCATTCATTCTGTTTTTACAGGGAAAATAAGGCATATTTTCGCCTGTCTGTTTGTCTGTCTCCTTTTTAATTCGTAAACACAAGCAACGTGTTCCTAGAGACCAGAGGTACGATTAATTATTAATTATTACTCACTTTTCTTTTATTTATTCATGACTTTGTTCCATCTCTGTGTTTTCTACCAACAACTTTTATCCTTCGACTATCACATGCTTTCATCTCTTCTTTAATCACTACACTAACTAGTTGTTACTCCCTCCGTCCCGGAATACTTGACCTGTTTTTCTTATCGGGCCGTCCCTTAATACTTGACCTGTTTCTAAAAATGGAAATATTCTAACAATTTTATATTATTTCTCACTCCACCCCTATTAACCCACCTACCCCTACTCCATACAAAAAATAATTAAAAATTCAACCCCTACTCTCCCCCAACCCCACCTCTTAACCCACCTCCCACTAACTACATTAAAATAATACCCCACTATCAACTACTACCTATTAAATTAAATAAGTCAATTCAAGTCCCTTAAACTCTGTGCCGGTCAAACCGGATCGAGTATTCCGGGACGGAGGGAGTATTTGTTAGAGTATAGGGTTACTTTTTATACTCCTTCCCTTTCATTTTGATATTTCTGTTTGAAAAAATAGAAAAAGTTTATGCTTTAAAGTTTAAAATAGAAACCGGTAATGTTTTATGAATGGTCCCGATCAGAAAAATAAGAATATCGATATGAAATGGTATTTTTTTAGTTCTATAATGATGTTCTAATTTCTACTTTTACGTTGTTAATTTACACTTTGTACTCTATTTGTTTCTTAACGTTAGTTCCGTTTGAAATCTAAGACAGTTCAATATAATTATATGAGCATACTTGTCGCAAGAATCTAAACCATGTGGATAACAGAGAGAAAAAATGAAGGAGTTTGTTGGGGATAAATGTTACTTGGGAGTTGAGTTGGGAGTAAATAATTTGTCACATAAATCTAAATAATTTGTCACATGAATCTAAACCATGTTGGTAAGAGTAAGAGAGAGAAATAATGAAGAGGTTTGTTAGGACAATTGTTACTTGGGAGTAAACAACTTGTCACATAATCTAAATCATGTAGGTAAGAGAGTGAAATAATGAGGGGGTTTGTTGAGGATAAATGTTTAGGCCCCGTCTTTTTGAATTTTATTTTAGTTTAGTTCAGCTCCATTTAGTTCAGTCAGTCCACTTCAACTTTATTCAGTTCAGTCAGTTCAGTTCAGCTCTATTCAGTTCAGTTCAACCATTCAGTCCAGTTCAGTTCAGTTCAGTTCAACTACATTCAGTCCAGTTCAATTCAACTCTATTCAGTCCAGTTCAGTTCAACTCCATTCAATCCAGTTTAATTGAATTCAGCTCCGCTCAAATTGGTTCAGTTCAGTTCAGCTAAAAAAAGCTCAGAAAAACATAGCCTTACTTGGGAGTTGAGTTGGCAAAATCTAACACGACACGAAAATAGAGGTATTAATTACTACTCCGTAGTATAGTAGCAGTGTAGTACTAGTACTCCGTAGTTGTTTATAGGTCATAAGGTGGCAACTCTATGAAGTTGAAAACAGAGAAATTGCAGAGTGTAGTCACTGTAGTGGTGTACTAGTACACTAGTACTACTAGGATTAAATTTGTTGGTTTAATCTAGATTGAATTTGAATTTGAAAAAAGGGCAGAGAGAAGAAAGATGGAGATAGTAGTGGTGATGATGGTGGTTTTAATGATAAATGGAGGAGCATTGGGTGCAGCTCCTAGAAAGGCCATAGATGTACCTTTTGGAAGAAATTATGCACCAACTTGGGCCTTTGATCACATCAAGTACTTCAATGGAGGCTCTCAGATTCAGCTTCTTCTTGATAAATACACTGGTATGCACCTATATCTATCTATCTATCTATCTATCTATATATATATATTACAGAGTTATTCTATCATATCATAAAATGAATATGTGAAATGGGGGCAGGTACTGGGTTCCAATCAAAAGGATCTTACTTGTTCGGTCACTTCAGCATGAATATCAAGTTGGTTGCTGGAGATTCCGCTGGAACTGTCACTGCCTTCTATGTTAGTATTCTCAATGCATTTTCTATTTTGTTTATATTATTGCTTCATTAAAACATACTTTATGATTCTGATATGTTTGTTAATTGTTAATTGTTAATTGTTAGTTGTCATCACAAAATTCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGAAACAGAACAGGACAACCCTACATTTTACAGACAAATGTGTTCACCGGAGGAAAGGGAGACAGAGAGCAAAGAATCTATCTATGGTTTGATCCAACCAAAGACTTCCATAGATACTCCGTTCTTTGGAATCTCTATCAAATTGTGTAAGTTCTAACTACTATAAATTAAATACTCTTTCTTTCTTTCATCTATTCTATTATATATTATTAATTAATTTATTATCAGATTCTTCGTGGATGACATACCAATAAGAGTGTTCAAAAATTGCAAAGATTTGGGAGTGAAATTCCCATTCAACCAAGCAATGAAAATGTATTCGAGCTTGTGGAACGCAGACGATTGGGCAACAAGAGGTGGATTAGAGAAAACAGATTGGTCTAAAGCTCCATTTGTGGCATCTTATAAGGGATTTCATATTGATGGTTGTGAAGCTTCTGTTGAGGCTAAGTTTTGTGCAACTCAAGGAAAGAGATGGTGGGATCAAAAAGAATTCCAAGACCTTGATGCTTTTCAATTTAGACGATTGAGATGGGTTCGTTCCAAGTTTACTATCTATAATTACTGTAAGGATAGAGTTAGATATCCAGCCATTCCTCCTGAATGTTCCAGAGATAGAGACTTGTTTTGATCTCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTCCCATTTTTCAGGATCCACCTTTTTTCTTTTCATGTTTCCTTTGAATGTAATGTAATGTAATGTAATGATATACATTTAATCATTACGCATTAATTTATGCTATTATTACGCATGTTATTAGTATTTACACTATGTTCTAATTTGTCACTGAGTTTTTCCCTACAATTAATGCAATTGGTAGATTTCTTATGGAATATTTGATGATGATGTGCAAAGAGCTTGATGGATGGATGGATGGATGGATGATGGATGAAGGATGAAGGATGAAGGATGATAATGAAGCTTTGCCATCTCTGAGAATAACATGGTTTTAATTTTGGTTGGTTACCGGTAACATATCACATATGGTGGTAAACTGGTAAGGTAATTAATTTGATTGTAACTCCTACCCAACACTACCACCAAAGTCCATTGTTATTGGTATATATAAATTGTATACTTGTACATACATTAGGATACCTAATACAATTAGGACTAATACTTTGTATTTACTATAAT ATGCTCGTACTCCGCATATTTTCGCCTGTCTGTTTGTCTGTCTCCTTTTTAATTCGTAAACACAAGCAACGTGTTCCTAGAGACCAGAGGGCAGAGAGAAGAAAGATGGAGATAGTAGTGGTGATGATGGTGGTTTTAATGATAAATGGAGGAGCATTGGGTGCAGCTCCTAGAAAGGCCATAGATGTACCTTTTGGAAGAAATTATGCACCAACTTGGGCCTTTGATCACATCAAGTACTTCAATGGAGGCTCTCAGATTCAGCTTCTTCTTGATAAATACACTGGTACTGGGTTCCAATCAAAAGGATCTTACTTGTTCGGTCACTTCAGCATGAATATCAAGTTGGTTGCTGGAGATTCCGCTGGAACTGTCACTGCCTTCTATTTGTCATCACAAAATTCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGAAACAGAACAGGACAACCCTACATTTTACAGACAAATGTGTTCACCGGAGGAAAGGGAGACAGAGAGCAAAGAATCTATCTATGGTTTGATCCAACCAAAGACTTCCATAGATACTCCGTTCTTTGGAATCTCTATCAAATTGTATTCTTCGTGGATGACATACCAATAAGAGTGTTCAAAAATTGCAAAGATTTGGGAGTGAAATTCCCATTCAACCAAGCAATGAAAATGTATTCGAGCTTGTGGAACGCAGACGATTGGGCAACAAGAGGTGGATTAGAGAAAACAGATTGGTCTAAAGCTCCATTTGTGGCATCTTATAAGGGATTTCATATTGATGGTTGTGAAGCTTCTGTTGAGGCTAAGTTTTGTGCAACTCAAGGAAAGAGATGGTGGGATCAAAAAGAATTCCAAGACCTTGATGCTTTTCAATTTAGACGATTGAGATGGGTTCGTTCCAAGTTTACTATCTATAATTACTGTAAGGATAGAGTTAGATATCCAGCCATTCCTCCTGAATGTTCCAGAGATAGAGACTTGTTTTGATCTCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTCCCATTTTTCAGGATCCACCTTTTTTCTTTTCATGTTTCCTTTGAATGTAATGTAATGTAATGTAATGATATACATTTAATCATTACGCATTAATTTATGCTATTATTACGCATGTTATTAGTATTTACACTATGTTCTAATTTGTCACTGAGTTTTTCCCTACAATTAATGCAATTGGTAGATTTCTTATGGAATATTTGATGATGATGTGCAAAGAGCTTGATGGATGGATGGATGGATGGATGATGGATGAAGGATGAAGGATGAAGGATGATAATGAAGCTTTGCCATCTCTGAGAATAACATGGTTTTAATTTTGGTTGGTTACCGGTAACATATCACATATGGTGGTAAACTGGTAAGGTAATTAATTTGATTGTAACTCCTACCCAACACTACCACCAAAGTCCATTGTTATTGGTATATATAAATTGTATACTTGTACATACATTAGGATACCTAATACAATTAGGACTAATACTTTGTATTTACTATAAT ATGCTCGTACTCCGCATATTTTCGCCTGTCTGTTTGTCTGTCTCCTTTTTAATTCGTAAACACAAGCAACGTGTTCCTAGAGACCAGAGGGCAGAGAGAAGAAAGATGGAGATAGTAGTGGTGATGATGGTGGTTTTAATGATAAATGGAGGAGCATTGGGTGCAGCTCCTAGAAAGGCCATAGATGTACCTTTTGGAAGAAATTATGCACCAACTTGGGCCTTTGATCACATCAAGTACTTCAATGGAGGCTCTCAGATTCAGCTTCTTCTTGATAAATACACTGGTACTGGGTTCCAATCAAAAGGATCTTACTTGTTCGGTCACTTCAGCATGAATATCAAGTTGGTTGCTGGAGATTCCGCTGGAACTGTCACTGCCTTCTATTTGTCATCACAAAATTCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGAAACAGAACAGGACAACCCTACATTTTACAGACAAATGTGTTCACCGGAGGAAAGGGAGACAGAGAGCAAAGAATCTATCTATGGTTTGATCCAACCAAAGACTTCCATAGATACTCCGTTCTTTGGAATCTCTATCAAATTGTATTCTTCGTGGATGACATACCAATAAGAGTGTTCAAAAATTGCAAAGATTTGGGAGTGAAATTCCCATTCAACCAAGCAATGAAAATGTATTCGAGCTTGTGGAACGCAGACGATTGGGCAACAAGAGGTGGATTAGAGAAAACAGATTGGTCTAAAGCTCCATTTGTGGCATCTTATAAGGGATTTCATATTGATGGTTGTGAAGCTTCTGTTGAGGCTAAGTTTTGTGCAACTCAAGGAAAGAGATGGTGGGATCAAAAAGAATTCCAAGACCTTGATGCTTTTCAATTTAGACGATTGAGATGGGTTCGTTCCAAGTTTACTATCTATAATTACTGTAAGGATAGAGTTAGATATCCAGCCATTCCTCCTGAATGTTCCAGAGATAGAGACTTGTTTTGA MLVLRIFSPVCLSVSFLIRKHKQRVPRDQRAERRKMEIVVVMMVVLMINGGALGAAPRKAIDVPFGRNYAPTWAFDHIKYFNGGSQIQLLLDKYTGTGFQSKGSYLFGHFSMNIKLVAGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKDFHRYSVLWNLYQIVFFVDDIPIRVFKNCKDLGVKFPFNQAMKMYSSLWNADDWATRGGLEKTDWSKAPFVASYKGFHIDGCEASVEAKFCATQGKRWWDQKEFQDLDAFQFRRLRWVRSKFTIYNYCKDRVRYPAIPPECSRDRDLF Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo19175.1 vs. NCBI nr
Match: gi|902223048|gb|KNA19361.1| (hypothetical protein SOVF_062300 [Spinacia oleracea]) HSP 1 Score: 622.1 bits (1603), Expect = 5.600e-175 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1
BLAST of Spo19175.1 vs. NCBI nr
Match: gi|255543280|ref|XP_002512703.1| (PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Ricinus communis]) HSP 1 Score: 556.6 bits (1433), Expect = 2.900e-155 Identity = 259/317 (81.70%), Postives = 281/317 (88.64%), Query Frame = 1
BLAST of Spo19175.1 vs. NCBI nr
Match: gi|731362719|ref|XP_010693035.1| (PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 5 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 552.7 bits (1423), Expect = 4.200e-154 Identity = 256/295 (86.78%), Postives = 276/295 (93.56%), Query Frame = 1
BLAST of Spo19175.1 vs. NCBI nr
Match: gi|1008904|gb|AAB39950.1| (xyloglucan endotransglycosylase [Tropaeolum majus]) HSP 1 Score: 546.2 bits (1406), Expect = 3.900e-152 Identity = 247/282 (87.59%), Postives = 265/282 (93.97%), Query Frame = 1
BLAST of Spo19175.1 vs. NCBI nr
Match: gi|82394881|gb|ABB72441.1| (xyloglucan endotransglucosylase [Betula pendula]) HSP 1 Score: 545.4 bits (1404), Expect = 6.600e-152 Identity = 246/287 (85.71%), Postives = 268/287 (93.38%), Query Frame = 1
BLAST of Spo19175.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIM4_SPIOL (Xyloglucan endotransglucosylase/hydrolase OS=Spinacia oleracea GN=SOVF_062300 PE=3 SV=1) HSP 1 Score: 622.1 bits (1603), Expect = 3.900e-175 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1
BLAST of Spo19175.1 vs. UniProtKB/TrEMBL
Match: B9RG34_RICCO (Xyloglucan endotransglucosylase/hydrolase OS=Ricinus communis GN=RCOM_1438910 PE=3 SV=1) HSP 1 Score: 556.6 bits (1433), Expect = 2.000e-155 Identity = 259/317 (81.70%), Postives = 281/317 (88.64%), Query Frame = 1
BLAST of Spo19175.1 vs. UniProtKB/TrEMBL
Match: Q41614_TROMA (Xyloglucan endotransglucosylase/hydrolase OS=Tropaeolum majus GN=XET1 PE=3 SV=1) HSP 1 Score: 546.2 bits (1406), Expect = 2.700e-152 Identity = 247/282 (87.59%), Postives = 265/282 (93.97%), Query Frame = 1
BLAST of Spo19175.1 vs. UniProtKB/TrEMBL
Match: A0MA74_BETPN (Xyloglucan endotransglucosylase/hydrolase OS=Betula pendula PE=2 SV=1) HSP 1 Score: 545.4 bits (1404), Expect = 4.600e-152 Identity = 246/287 (85.71%), Postives = 268/287 (93.38%), Query Frame = 1
BLAST of Spo19175.1 vs. UniProtKB/TrEMBL
Match: A0A067E1L8_CITSI (Xyloglucan endotransglucosylase/hydrolase OS=Citrus sinensis GN=CISIN_1g020962mg PE=3 SV=1) HSP 1 Score: 543.9 bits (1400), Expect = 1.300e-151 Identity = 244/290 (84.14%), Postives = 269/290 (92.76%), Query Frame = 1
BLAST of Spo19175.1 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1) HSP 1 Score: 528.5 bits (1360), Expect = 5.300e-149 Identity = 236/289 (81.66%), Postives = 266/289 (92.04%), Query Frame = 1
BLAST of Spo19175.1 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1) HSP 1 Score: 517.7 bits (1332), Expect = 9.300e-146 Identity = 231/284 (81.34%), Postives = 259/284 (91.20%), Query Frame = 1
BLAST of Spo19175.1 vs. ExPASy Swiss-Prot
Match: XTH1_SOYBN (Xyloglucan endotransglucosylase/hydrolase 1 OS=Glycine max GN=XTH1 PE=2 SV=2) HSP 1 Score: 514.6 bits (1324), Expect = 7.900e-145 Identity = 235/287 (81.88%), Postives = 257/287 (89.55%), Query Frame = 1
BLAST of Spo19175.1 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1) HSP 1 Score: 514.2 bits (1323), Expect = 1.000e-144 Identity = 232/284 (81.69%), Postives = 254/284 (89.44%), Query Frame = 1
BLAST of Spo19175.1 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1) HSP 1 Score: 500.4 bits (1287), Expect = 1.500e-140 Identity = 224/286 (78.32%), Postives = 255/286 (89.16%), Query Frame = 1
BLAST of Spo19175.1 vs. TAIR (Arabidopsis)
Match: AT5G13870.1 (xyloglucan endotransglucosylase/hydrolase 5) HSP 1 Score: 517.7 bits (1332), Expect = 5.200e-147 Identity = 231/284 (81.34%), Postives = 259/284 (91.20%), Query Frame = 1
BLAST of Spo19175.1 vs. TAIR (Arabidopsis)
Match: AT2G06850.1 (xyloglucan endotransglucosylase/hydrolase 4) HSP 1 Score: 500.4 bits (1287), Expect = 8.600e-142 Identity = 227/286 (79.37%), Postives = 257/286 (89.86%), Query Frame = 1
BLAST of Spo19175.1 vs. TAIR (Arabidopsis)
Match: AT3G23730.1 (xyloglucan endotransglucosylase/hydrolase 16) HSP 1 Score: 320.9 bits (821), Expect = 9.400e-88 Identity = 155/291 (53.26%), Postives = 196/291 (67.35%), Query Frame = 1
BLAST of Spo19175.1 vs. TAIR (Arabidopsis)
Match: AT4G14130.1 (xyloglucan endotransglucosylase/hydrolase 15) HSP 1 Score: 318.2 bits (814), Expect = 6.100e-87 Identity = 151/257 (58.75%), Postives = 185/257 (71.98%), Query Frame = 1
BLAST of Spo19175.1 vs. TAIR (Arabidopsis)
Match: AT5G65730.1 (xyloglucan endotransglucosylase/hydrolase 6) HSP 1 Score: 310.8 bits (795), Expect = 9.700e-85 Identity = 141/257 (54.86%), Postives = 179/257 (69.65%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo19175.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo19175.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo19175.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo19175.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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