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Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTCTCTAGTGATCATCATATACATTTTCAATTCTCTCTCTAAGTTACTTATACCAAAAAATGGGTACTGAAGCTATTGAGATCATAACTTCAAATGCTTTGTCAGCCATTTTTGATAAACAAAACCGTTTCAATCAAGATAACAATGAGTTTTGGTATGAGGAAGAAATTGATGAGGATCTCAAATGGTCCTTCGCTTTGAAGAGGTTTGATTTTATTTTACTATCATCTTTTATTTTCAATTGACTATTTAATTAATCAAAATTCCGGAATTTGAGTGTTGGATCGGAGAAGTTTCAGGTCGCATTTCCATTGAAATTCAATGAATGGTTGTGAATTTGTCATATATTCTTGAAATTCGTATGTCAACTTCATTCCATTAAATTAAATGATTTGTTAATCTTGTCATCCAGCGTGCTGCAAAAAGCCACTAGCGAATACCAGGACATTGTGCTACTCGACACTAAGAAATTTGGGAAGGTTTGTACATCAAAAATAAATAAATAAATAAAAAAAATTATCTTTTGTATTTGATTTTTTATTTAATTTGAAAAATTCTTGTATAGTTCTCGATCAATGCTCCTATCGTCATCACGATGAGATAGACTTATAGTTTCCGTAATCTCTAAAAAAGTAAAAATGGTATATATTAGCGTGGCGGGACTATATTTGAGAATTACATTGGTCGTGGACCATGCATAAATTCTTCTTCTTTTATATAGATTCCTTTTTCTTTTTTCGTCGAAAAAAGTTGGTATATCTTTTACGGCACTAGTTTGCTATTTTGGATGATGATTTTTTGTATGTATATATATGTATAGGTGTTGGTGCTTGATGGTAAGATGCAAAGTGCGGAGGCTGATGAATTTATCTACCATGAGTGCTTGATTCACCCTGCCCTCCTTTGTCATCTAAAGTAAGTACAACTCCTATAACTCAATTATAACTTTATTAATTAGGGTGTTTTCTATTCATCTGATTTTCACTAATTTTTTCTGAACTTATCTTATCTGAACTTATCTTATGTGAACTTATCTGAACTCATTTTTCCCATAATAAAAGAAAATAAGGTGAATAGAACAGAGCCTTAGATGAATCATTTCAAGTTTACAAGGAAATAAAATAAACGATTAATTGTTAACAAAATCTAAAACTCGATCAAATTTGTTGCATGCACAATCAATCATCAATGTATTGAATATTTATATGCATCAAAATTGTATTTGATTATTTACATGCAATAGTTTCTACCGCCCTCCAATACTAAAATGAAGTAAGAGCACAATAGAAAAATCAAATGTTAAATGATTACTATACCAAGAAAAGTGATAACTTTTTCCATATTAGCGAACATATATATTATACAATATGTGAGAAGTAATTTCAATTTGGACGAAAGTAGAGTATATAAGTTGCAACTTAATTAGGAGGACGGCGGAAAAAATAATTCTTTCATTAAGGCATATATTCTCATAAAAATCCAAAAAACTTAATAGTAGGTCGCATACCACTATCCAGTATCCACTATAGTTGATGATTATATGAAAACTTTAGAAACAGTTAATAATGTGGCATTTTGTCGCCTGTCTCATTCGCATTTCTGGTTAAGCTCATAATCTATAACATGCATGCGCGCAATTATTATTTCCCTGATATGCATATAGAGTTATAGACATATAGTATATGATTATATAGAATGAAATATATCGTGGTACTCCATAGTACACTAGTACTTATTGTAGTACATATGTAGCGATTTCACACATGTCGTGCTCTAATTGGCTCGAAATTATACAGAATAAGTGACTACTCCGTATATATGATTAAGTTTAACTAATGAGTATTGAGTATTGAGTATTGAGTATTGACATTTGTTAACTAATGATGACAGCCCAAAATCTATGTTCATAATGGGAGGTGGTGAAGGTTCTGCTGCTAGAGAAGCTCTTAAGCACAAGTCCATTGACAAAGTGGTCATGTGTGATATTGATCAGGTAAGAGTATAAGACATACATACCCGTCATCATGATCAGTGTCGGATTCCAAACTTTTATTAAATTACTCCGTATTACTCCCTCCGTCCCGGAATACTTGACCTGTTTTCCTTATCGGGCCGTCCCTTAATACTTGACCTGTTTCTAAAAATGGAAATATTCTAACAATATTATATTATTTCTCACTCCACCCCTATTAACCCACCTACCCCCTACTCCATACAAAAAATAATTAAAAATTCAACCCCTACTCTCCCCCAACCCCACCTCTTAACCCACATCCCACTAACTACATTAAAATAATACCCCACTATCAACTACTACCTATTAAATTAAATAAGTCAATTCAAGTCCCTTAAACTCTGTGCCGGTCAAACCGGGTCGAGTATTCCGGGACGGAGGGAGTAGAAAAGTAAAACGGATTATACTGTATTTATTTATTTAAGGAAGGTGAATAAGTAATACTACGTATGTAGTAACACATAACATACTTGTACTACATACTATATTATGGTAATGTATAATGTGCTTAATTAATTTCGTTACTCATGACAGGAGGTGGTTGATTTCTGCCGTAAACACTTGACAATCAACCAAGAAGCCTTCAACAATAACAAGTTTGAGCTTGTGATCAATGATGCAAAGTAAGTACATTTGATGTATTGGGATTTGGGAACTTTCAAATTTCAATAATAAAATAGTACAACTTTTAAAAATTTGAAACAAGTGTAATTTCTTACATGTAACGAAATGGGCGCGTATTGAACCCTACTCGAAACTGAAAGTAGAATATTGTTTGATTGTACAGGGCTGAATTGGAAGGAAGGAAGGAGAAATTTGATATAATAGTTGGAGATTTGGCAGACCCAGTTGAAGGAGGACCTTGTTACCAACTTTACACCAAATCTTTCTATGAGACTATTCTCAAACCTAGGCTTACTGATAATGGCATCTTTGTCACTCAGGTTTGATTACTGTCATTTTTTGATTTACAGTAAAAATACTTTGTAATTCCAAAATTTACTGTATTTTTTTATTTAAATACTTTGTAATTCCAAAATTTCACACTAATTAATGATTCTTTTTATAGGCTGGGCCTGCAGGAATTTACACCCACAAGGAGGTGTTCTCTTCCATTTACAACACCATCAGACAAGTCTTCAAATGTAAGCCTTTAGTGAGTTTAGTCTCCCAAATAATGTTACAAGGGAGACCGGTTTCTACAAATGGGTCGGACTATAACTTGACATTGGTGGCATGGCCCAACGGCCAAGATGCACGGATATAAGACATAGACATAGTACACTTTAAGTGTCCGGATAAAATTGTCACATTTCACATAGTACACTTTAAGGGCCCGGATAAAATTGTCACATTTCACATAGTACACTTTAAGGGCCCGGATAAAATTGTCGCATTTCCTAAGTCCTCCGCAATGGTTTGTAATTGAAATTATCTACTAGTTTTCAAGTTTGTTTGTTTTGCTTTCTGCAGATGTAGTTGCATTTACTGCTCATGTGCCATCGTATGCAGATACTTGGGGATGGGTTATGGTATGGACATGAAATCTCTTTAAGTTTTGTTAATGTAAATGATAATTTAGTTAGATTAATTTATAAGTGCATATTAATTTGTAATTAGGCCTCGGATCATCCAATTCTCATTGATGCTAAAGATCTCGATAAGAAGATCCAAGATCGGATTGATGGGGAGTTGCTATACCTGAATGGGACTTCCATACTTTCATCCACTTCCCTAAACAAAACTCTCTCTCAATCGTAAGCTGACTAACATTCTTGTATTTTGTTTACAAATTTCGAGTATATAATTTCCGATTTCCTTTTGTTAGGATTAATTGTGTTTTACCTCCTATAACTCTGTCAGGCTGTTGCAAGAAACTCATATCTATACTGAAGAAAGTGCAAGATTTCTGCATGGTCATGGGCTAGTTAATCGTCTCTAAGGATTGCAGAAGGGCGCGCATCAACTGGATTAAGGGCAATTAATGTCAAATGTTGATCAATAGAATAGTAACTTCAGTGGGCTATTCTTCTCTATAAGTAGGGTTCTTGTAAGGGGTTGTTGTTGTTGTAGAAATTATATTAGTAGCGCACATGGAAGAAAAGAAAGAAAGAAAGAAAGAACTGTCTTTAACTTTATTTTATGACTCTCTAGTGATCATCATATACATTTTCAATTCTCTCTCTAAGTTACTTATACCAAAAAATGGGTACTGAAGCTATTGAGATCATAACTTCAAATGCTTTGTCAGCCATTTTTGATAAACAAAACCGTTTCAATCAAGATAACAATGAGTTTTGGTATGAGGAAGAAATTGATGAGGATCTCAAATGGTCCTTCGCTTTGAAGAGCGTGCTGCAAAAAGCCACTAGCGAATACCAGGACATTGTGCTACTCGACACTAAGAAATTTGGGAAGGTGTTGGTGCTTGATGGTAAGATGCAAAGTGCGGAGGCTGATGAATTTATCTACCATGAGTGCTTGATTCACCCTGCCCTCCTTTGTCATCTAAACCCAAAATCTATGTTCATAATGGGAGGTGGTGAAGGTTCTGCTGCTAGAGAAGCTCTTAAGCACAAGTCCATTGACAAAGTGGTCATGTGTGATATTGATCAGGAGGTGGTTGATTTCTGCCGTAAACACTTGACAATCAACCAAGAAGCCTTCAACAATAACAAGTTTGAGCTTGTGATCAATGATGCAAAGGCTGAATTGGAAGGAAGGAAGGAGAAATTTGATATAATAGTTGGAGATTTGGCAGACCCAGTTGAAGGAGGACCTTGTTACCAACTTTACACCAAATCTTTCTATGAGACTATTCTCAAACCTAGGCTTACTGATAATGGCATCTTTGTCACTCAGGCTGGGCCTGCAGGAATTTACACCCACAAGGAGGTGTTCTCTTCCATTTACAACACCATCAGACAAGTCTTCAAATATGTAGTTGCATTTACTGCTCATGTGCCATCGTATGCAGATACTTGGGGATGGGTTATGGCCTCGGATCATCCAATTCTCATTGATGCTAAAGATCTCGATAAGAAGATCCAAGATCGGATTGATGGGGAGTTGCTATACCTGAATGGGACTTCCATACTTTCATCCACTTCCCTAAACAAAACTCTCTCTCAATCGCTGTTGCAAGAAACTCATATCTATACTGAAGAAAGTGCAAGATTTCTGCATGGTCATGGGCTAAATAGTAACTTCAGTGGGCTATTCTTCTCTATAAGTAGGGTTCTTGTAAGGGGTTGTTGTTGTTGTAGAAATTATATTAGTAGCGCACATGGAAGAAAAGAAAGAAAGAAAGAAAGAACTGTCTTTAACTTTATTTTATGA ATGGGTACTGAAGCTATTGAGATCATAACTTCAAATGCTTTGTCAGCCATTTTTGATAAACAAAACCGTTTCAATCAAGATAACAATGAGTTTTGGTATGAGGAAGAAATTGATGAGGATCTCAAATGGTCCTTCGCTTTGAAGAGCGTGCTGCAAAAAGCCACTAGCGAATACCAGGACATTGTGCTACTCGACACTAAGAAATTTGGGAAGGTGTTGGTGCTTGATGGTAAGATGCAAAGTGCGGAGGCTGATGAATTTATCTACCATGAGTGCTTGATTCACCCTGCCCTCCTTTGTCATCTAAACCCAAAATCTATGTTCATAATGGGAGGTGGTGAAGGTTCTGCTGCTAGAGAAGCTCTTAAGCACAAGTCCATTGACAAAGTGGTCATGTGTGATATTGATCAGGAGGTGGTTGATTTCTGCCGTAAACACTTGACAATCAACCAAGAAGCCTTCAACAATAACAAGTTTGAGCTTGTGATCAATGATGCAAAGGCTGAATTGGAAGGAAGGAAGGAGAAATTTGATATAATAGTTGGAGATTTGGCAGACCCAGTTGAAGGAGGACCTTGTTACCAACTTTACACCAAATCTTTCTATGAGACTATTCTCAAACCTAGGCTTACTGATAATGGCATCTTTGTCACTCAGGCTGGGCCTGCAGGAATTTACACCCACAAGGAGGTGTTCTCTTCCATTTACAACACCATCAGACAAGTCTTCAAATATGTAGTTGCATTTACTGCTCATGTGCCATCGTATGCAGATACTTGGGGATGGGTTATGGCCTCGGATCATCCAATTCTCATTGATGCTAAAGATCTCGATAAGAAGATCCAAGATCGGATTGATGGGGAGTTGCTATACCTGAATGGGACTTCCATACTTTCATCCACTTCCCTAAACAAAACTCTCTCTCAATCGCTGTTGCAAGAAACTCATATCTATACTGAAGAAAGTGCAAGATTTCTGCATGGTCATGGGCTAAATAGTAACTTCAGTGGGCTATTCTTCTCTATAAGTAGGGTTCTTGTAAGGGGTTGTTGTTGTTGTAGAAATTATATTAGTAGCGCACATGGAAGAAAAGAAAGAAAGAAAGAAAGAACTGTCTTTAACTTTATTTTATGA MGTEAIEIITSNALSAIFDKQNRFNQDNNEFWYEEEIDEDLKWSFALKSVLQKATSEYQDIVLLDTKKFGKVLVLDGKMQSAEADEFIYHECLIHPALLCHLNPKSMFIMGGGEGSAAREALKHKSIDKVVMCDIDQEVVDFCRKHLTINQEAFNNNKFELVINDAKAELEGRKEKFDIIVGDLADPVEGGPCYQLYTKSFYETILKPRLTDNGIFVTQAGPAGIYTHKEVFSSIYNTIRQVFKYVVAFTAHVPSYADTWGWVMASDHPILIDAKDLDKKIQDRIDGELLYLNGTSILSSTSLNKTLSQSLLQETHIYTEESARFLHGHGLNSNFSGLFFSISRVLVRGCCCCRNYISSAHGRKERKKERTVFNFIL Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Spo19414.1 vs. NCBI nr
Match: gi|731317722|ref|XP_010669338.1| (PREDICTED: thermospermine synthase ACAULIS5 isoform X4 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 607.4 bits (1565), Expect = 1.600e-170 Identity = 298/335 (88.96%), Postives = 320/335 (95.52%), Query Frame = 1
BLAST of Spo19414.1 vs. NCBI nr
Match: gi|731317720|ref|XP_010669337.1| (PREDICTED: thermospermine synthase ACAULIS5 isoform X3 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 602.8 bits (1553), Expect = 4.000e-169 Identity = 298/336 (88.69%), Postives = 319/336 (94.94%), Query Frame = 1
BLAST of Spo19414.1 vs. NCBI nr
Match: gi|224088768|ref|XP_002308531.1| (hypothetical protein POPTR_0006s23880g [Populus trichocarpa]) HSP 1 Score: 541.2 bits (1393), Expect = 1.400e-150 Identity = 256/335 (76.42%), Postives = 297/335 (88.66%), Query Frame = 1
BLAST of Spo19414.1 vs. NCBI nr
Match: gi|400268242|gb|AFP74573.1| (thermospermine synthase [Populus tremula x Populus tremuloides]) HSP 1 Score: 540.0 bits (1390), Expect = 3.200e-150 Identity = 256/335 (76.42%), Postives = 296/335 (88.36%), Query Frame = 1
BLAST of Spo19414.1 vs. NCBI nr
Match: gi|743812837|ref|XP_011019369.1| (PREDICTED: thermospermine synthase ACAULIS5 [Populus euphratica]) HSP 1 Score: 538.5 bits (1386), Expect = 9.400e-150 Identity = 254/335 (75.82%), Postives = 297/335 (88.66%), Query Frame = 1
BLAST of Spo19414.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CW98_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g034040 PE=3 SV=1) HSP 1 Score: 607.4 bits (1565), Expect = 1.100e-170 Identity = 298/335 (88.96%), Postives = 320/335 (95.52%), Query Frame = 1
BLAST of Spo19414.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D134_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g034040 PE=3 SV=1) HSP 1 Score: 602.8 bits (1553), Expect = 2.800e-169 Identity = 298/336 (88.69%), Postives = 319/336 (94.94%), Query Frame = 1
BLAST of Spo19414.1 vs. UniProtKB/TrEMBL
Match: B9HD20_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s23880g PE=3 SV=1) HSP 1 Score: 541.2 bits (1393), Expect = 1.000e-150 Identity = 256/335 (76.42%), Postives = 297/335 (88.66%), Query Frame = 1
BLAST of Spo19414.1 vs. UniProtKB/TrEMBL
Match: T1PPE6_9ROSI (Thermospermine synthase OS=Populus tremula x Populus tremuloides GN=POPACAULIS5 PE=2 SV=1) HSP 1 Score: 540.0 bits (1390), Expect = 2.200e-150 Identity = 256/335 (76.42%), Postives = 296/335 (88.36%), Query Frame = 1
BLAST of Spo19414.1 vs. UniProtKB/TrEMBL
Match: A0A067KD25_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07613 PE=3 SV=1) HSP 1 Score: 525.0 bits (1351), Expect = 7.500e-146 Identity = 250/332 (75.30%), Postives = 290/332 (87.35%), Query Frame = 1
BLAST of Spo19414.1 vs. ExPASy Swiss-Prot
Match: ACL5_ARATH (Thermospermine synthase ACAULIS5 OS=Arabidopsis thaliana GN=ACL5 PE=1 SV=1) HSP 1 Score: 487.6 bits (1254), Expect = 1.200e-136 Identity = 231/332 (69.58%), Postives = 279/332 (84.04%), Query Frame = 1
BLAST of Spo19414.1 vs. ExPASy Swiss-Prot
Match: SPEE_SULTO (Polyamine aminopropyltransferase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=speE PE=3 SV=1) HSP 1 Score: 219.9 bits (559), Expect = 4.600e-56 Identity = 119/280 (42.50%), Postives = 173/280 (61.79%), Query Frame = 1
BLAST of Spo19414.1 vs. ExPASy Swiss-Prot
Match: SPEE_SULSO (Polyamine aminopropyltransferase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=speE PE=1 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 9.600e-54 Identity = 116/277 (41.88%), Postives = 169/277 (61.01%), Query Frame = 1
BLAST of Spo19414.1 vs. ExPASy Swiss-Prot
Match: SPEE_AERPE (Polyamine aminopropyltransferase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=speE PE=3 SV=2) HSP 1 Score: 204.9 bits (520), Expect = 1.500e-51 Identity = 113/301 (37.54%), Postives = 187/301 (62.13%), Query Frame = 1
BLAST of Spo19414.1 vs. ExPASy Swiss-Prot
Match: SPEE_SULIM (Polyamine aminopropyltransferase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=speE PE=3 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 2.500e-49 Identity = 108/277 (38.99%), Postives = 165/277 (59.57%), Query Frame = 1
BLAST of Spo19414.1 vs. TAIR (Arabidopsis)
Match: AT5G19530.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) HSP 1 Score: 487.6 bits (1254), Expect = 6.700e-138 Identity = 231/332 (69.58%), Postives = 279/332 (84.04%), Query Frame = 1
BLAST of Spo19414.1 vs. TAIR (Arabidopsis)
Match: AT1G70310.1 (spermidine synthase 2) HSP 1 Score: 137.1 bits (344), Expect = 2.200e-32 Identity = 73/235 (31.06%), Postives = 130/235 (55.32%), Query Frame = 1
BLAST of Spo19414.1 vs. TAIR (Arabidopsis)
Match: AT1G23820.1 (spermidine synthase 1) HSP 1 Score: 136.7 bits (343), Expect = 2.900e-32 Identity = 76/235 (32.34%), Postives = 130/235 (55.32%), Query Frame = 1
BLAST of Spo19414.1 vs. TAIR (Arabidopsis)
Match: AT5G53120.6 (spermidine synthase 3) HSP 1 Score: 117.9 bits (294), Expect = 1.400e-26 Identity = 84/293 (28.67%), Postives = 140/293 (47.78%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo19414.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo19414.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo19414.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo19414.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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