Spo19530.1 (mRNA) | SpinachBase

Overview


Name	Spo19530.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	NADH-ubiquinone oxidoreductase chain
Location	SpoScf_22756 : 63 .. 1005 (+)
Sequence length	753

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTGCTGAGACATGCGCTTAAGGAGAAAGTCTTTGCAACCGAAGTGCGCCAAGGGGCCGAGTGACGTGCCAGCGCTCCAGATTTTTTGCCAGCACGTAGCTGTGCTGTCAGTAAGAAGGGAGCCGGCGCCTTTCGAAGTACTTTCTAGTCTTTCGTTTTCAAAAATTTCTTTAAGATAGAAAGGGCTTTTCTCGCTTGTTTAGTAAGGTCCAGTTTTTGGCCTTATCTTGCAGGTGACGACGACGTCGAGTTGGCGGCGGAAAAGACTCGGCATTCAGGCGAGCCGCCCGGTGGTGTGGTACGTAGTGGGTTTAGTACGCTCCGCCAAAACGGCTCCGAAACAAACAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGAGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGNGAATATGGCTACTTTCTTTACAATTCTTCGCATCGAAGAAAGCTCTTTATCAAGTCAATTCGACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTTTCGCCCGAAGCATCGGACCAATGATCACCCATGGCTTCTGTGTACCACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGGCGCATACCACGGTGGGGTATTCGACTGGGGTGAAGTCGTAA

mRNA sequence

GCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTGCTGAGACATGCGCTTAAGGAGAAAGTCTTTGCAACCGAAGTGACGACGACGTCGAGTTGGCGGCGGAAAAGACTCGGCATTCAGGCGAGCCGCCCGGTGGTGTGGTACGTAGTGGGTTTAGTACGCTCCGCCAAAACGGCTCCGAAACAAACAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGAGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGNGAATATGGCTACTTTCTTTACAATTCTTCGCATCGAAGAAAGCTCTTTATCAAGTCAATTCGACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTTTCGCCCGAAGCATCGGACCAATGATCACCCATGGCTTCTGTGTACCACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGGCGCATACCACGGTGGGGTATTCGACTGGGGTGAAGTCGTAA

Coding sequence (CDS)

GCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTGCTGAGACATGCGCTTAAGGAGAAAGTCTTTGCAACCGAAGTGACGACGACGTCGAGTTGGCGGCGGAAAAGACTCGGCATTCAGGCGAGCCGCCCGGTGGTGTGGTACGTAGTGGGTTTAGTACGCTCCGCCAAAACGGCTCCGAAACAAACAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGAGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGNGAATATGGCTACTTTCTTTACAATTCTTCGCATCGAAGAAAGCTCTTTATCAAGTCAATTCGACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTTTCGCCCGAAGCATCGGACCAATGATCACCCATGGCTTCTGTGTACCACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGGCGCATACCACGGTGGGGTATTCGACTGGGGTGAAGTCGTAA

Protein sequence

AAWLSSARVVRCLVKSYNERNPRFVLLRHALKEKVFATEVTTTSSWRRKRLGIQASRPVVWYVVGLVRSAKTAPKQTKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLENMKLESLVIADQHAAVNMYPGPVHTARHTLGIXNMATFFTILRIEESSLSSQFDPGPVHTARHTLGIGFARSIGPMITHGFCVPLVPQRLLVVLLAHTTVGYSTGVKS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo19530	Spo19530	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo19530.1	Spo19530.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19530.1.exon.1	Spo19530.1.exon.1	exon
Spo19530.1.exon.2	Spo19530.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19530.1.CDS.1	Spo19530.1.CDS.1	CDS
Spo19530.1.CDS.2	Spo19530.1.CDS.2	CDS

Homology

[Close]

BLAST of Spo19530.1 vs. NCBI nr
Match: gi|527209880|gb|EPS74490.1| (hypothetical protein M569_00256 [Genlisea aurea])

HSP 1 Score: 219.9 bits (559), Expect = 4.900e-54
Identity = 118/178 (66.29%), Postives = 123/178 (69.10%), Query Frame = 1


		  
Query: 73  APKQTKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDC 132
           AP++ KR VPHSR TASDILEEGGD+VKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDC
Sbjct: 42  APEERKRRVPHSRRTASDILEEGGDNVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDC 101

Query: 133 LSSDCSLQLENMKLESLVIADQHAAVNMYPGPVHTARHTLGIXNMATFFTILRIEESSLS 192
           LSSDCSLQL NMKL+SLVIA QHAAVNMYPGPVHTARHTLGI                 +
Sbjct: 102 LSSDCSLQLGNMKLKSLVIAHQHAAVNMYPGPVHTARHTLGI---------------GFA 161

Query: 193 SQFDPGPVHTARHTLGIGFARSIGPMITHGFCVPLVPQRLLVVLLAHTTVGYSTGVKS 251
               P   H    TL                     PQRLLVVLLAHTTVG STGVKS
Sbjct: 162 RSIGPTIAHDFCGTLV--------------------PQRLLVVLLAHTTVGSSTGVKS 184

[Close]

BLAST of Spo19530.1 vs. NCBI nr
Match: gi|442803208|gb|AGC78943.1| (hypothetical protein (mitochondrion) [Vicia faba])

HSP 1 Score: 199.5 bits (506), Expect = 6.800e-48
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 1


		  
Query: 81  VPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQ 140
           +PHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQ
Sbjct: 1   MPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQ 60

Query: 141 LENMKLESLVIADQHAAVNMYPGPVHTARHTLGI 175
           L NMKLESLVIADQHAAVNMYPGPVHTARHTLGI
Sbjct: 61  LGNMKLESLVIADQHAAVNMYPGPVHTARHTLGI 94

[Close]

BLAST of Spo19530.1 vs. NCBI nr
Match: gi|94502665|ref|YP_588403.1| (hypothetical protein ZeamMp158 (mitochondrion) [Zea mays subsp. mays])

HSP 1 Score: 168.7 bits (426), Expect = 1.300e-38
Identity = 83/109 (76.15%), Postives = 89/109 (81.65%), Query Frame = 1


		  
Query: 40  VTTTSSWRRKRLGIQASRPVVWYVVGLVRSAKT---APKQTKRCVPHSRGTASDILEEGG 99
           VTTTSSWRR++   +   P      G+VRS  +   APKQ KRCVPHSRGTAS+ILEEGG
Sbjct: 8   VTTTSSWRRRKTRHEGQPPG-----GVVRSGNSTRPAPKQRKRCVPHSRGTASEILEEGG 67

Query: 100 DDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLENMK 146
           DDVKSAWPLWAGPHTCYNGN NGKQGCKAERIRKDCLSSDCSLQL NMK
Sbjct: 68  DDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQLGNMK 111

[Close]

BLAST of Spo19530.1 vs. NCBI nr
Match: gi|775286450|dbj|GAN86215.1| (hypothetical protein Gain_0022_002 [Komagataeibacter intermedius TF2])

HSP 1 Score: 134.8 bits (338), Expect = 2.100e-28
Identity = 65/92 (70.65%), Postives = 73/92 (79.35%), Query Frame = 1


		  
Query: 83  HSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLE 142
           HS+GTA D  EEGGDDVKS+WPL  G HTCYNG  +GK G   E I K  LSSDC+LQLE
Sbjct: 4   HSKGTAGDKPEEGGDDVKSSWPLCPGLHTCYNGGDSGKPGGDTEPISKSRLSSDCTLQLE 63

Query: 143 NMKLESLVIADQHAAVNMYPGPVHTARHTLGI 175
            MK+ESLVIADQHAAVN +PG VHTARHT+G+
Sbjct: 64  CMKVESLVIADQHAAVNTFPGLVHTARHTMGV 95

[Close]

BLAST of Spo19530.1 vs. NCBI nr
Match: gi|775290090|dbj|GAN74957.1| (hypothetical protein Apmu_0247_01 [Acidiphilium multivorum AIU301])

HSP 1 Score: 133.3 bits (334), Expect = 6.000e-28
Identity = 65/91 (71.43%), Postives = 71/91 (78.02%), Query Frame = 1


		  
Query: 83  HSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLE 142
           HS GTA D  EEGGDDVKS+WPL  G HTCYNG  +GK G   E I K  LSSDC+LQLE
Sbjct: 51  HSEGTAGDKPEEGGDDVKSSWPLCPGLHTCYNGGDSGKPGGDTELISKSRLSSDCTLQLE 110

Query: 143 NMKLESLVIADQHAAVNMYPGPVHTARHTLG 174
            MK+ESLVIADQHAAVN +PG VHTARHT+G
Sbjct: 111 CMKVESLVIADQHAAVNTFPGLVHTARHTMG 141

[Close]

BLAST of Spo19530.1 vs. UniProtKB/TrEMBL
Match: S8D505_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_00256 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 3.400e-54
Identity = 118/178 (66.29%), Postives = 123/178 (69.10%), Query Frame = 1


		  
Query: 73  APKQTKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDC 132
           AP++ KR VPHSR TASDILEEGGD+VKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDC
Sbjct: 42  APEERKRRVPHSRRTASDILEEGGDNVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDC 101

Query: 133 LSSDCSLQLENMKLESLVIADQHAAVNMYPGPVHTARHTLGIXNMATFFTILRIEESSLS 192
           LSSDCSLQL NMKL+SLVIA QHAAVNMYPGPVHTARHTLGI                 +
Sbjct: 102 LSSDCSLQLGNMKLKSLVIAHQHAAVNMYPGPVHTARHTLGI---------------GFA 161

Query: 193 SQFDPGPVHTARHTLGIGFARSIGPMITHGFCVPLVPQRLLVVLLAHTTVGYSTGVKS 251
               P   H    TL                     PQRLLVVLLAHTTVG STGVKS
Sbjct: 162 RSIGPTIAHDFCGTLV--------------------PQRLLVVLLAHTTVGSSTGVKS 184

[Close]

BLAST of Spo19530.1 vs. UniProtKB/TrEMBL
Match: R4IV41_VICFA (Uncharacterized protein OS=Vicia faba GN=rrn18 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 4.800e-48
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 1


		  
Query: 81  VPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQ 140
           +PHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQ
Sbjct: 1   MPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQ 60

Query: 141 LENMKLESLVIADQHAAVNMYPGPVHTARHTLGI 175
           L NMKLESLVIADQHAAVNMYPGPVHTARHTLGI
Sbjct: 61  LGNMKLESLVIADQHAAVNMYPGPVHTARHTLGI 94

[Close]

BLAST of Spo19530.1 vs. UniProtKB/TrEMBL
Match: M0ZXY3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004057 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 4.300e-41
Identity = 82/88 (93.18%), Postives = 82/88 (93.18%), Query Frame = 1


		  
Query: 87  TASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLENMKL 146
           TASDILEEGGDDVK AWPLWAGPH CYNGNYNGKQGCKAERIRKDCLSSDCSLQL NMKL
Sbjct: 25  TASDILEEGGDDVKPAWPLWAGPHMCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKL 84

Query: 147 ESLVIADQHAAVNMYPGPVHTARHTLGI 175
           ES VIADQH AVNMYPG VHTARHTLGI
Sbjct: 85  ESPVIADQHVAVNMYPGLVHTARHTLGI 112

[Close]

BLAST of Spo19530.1 vs. UniProtKB/TrEMBL
Match: K4BH93_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 6.200e-40
Identity = 81/88 (92.05%), Postives = 83/88 (94.32%), Query Frame = 1


		  
Query: 87  TASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLENMKL 146
           TASDILEEGGDDVKSA PLWAG HTCYNGNYNGKQGCKAERI KDCLSSDCSLQL NMK+
Sbjct: 73  TASDILEEGGDDVKSALPLWAGTHTCYNGNYNGKQGCKAERIWKDCLSSDCSLQLGNMKV 132

Query: 147 ESLVIADQHAAVNMYPGPVHTARHTLGI 175
           ES+VIADQHAAVNMYPGPVHTA HTLGI
Sbjct: 133 ESIVIADQHAAVNMYPGPVHTACHTLGI 160

[Close]

BLAST of Spo19530.1 vs. UniProtKB/TrEMBL
Match: A0A0C4B3M7_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 9.000e-39
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 1


		  
Query: 92  LEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLENMKLESLVI 151
           +EEGGDDVKSAWPLWAGPHTCYNGN NGKQGCKAE+IRKDCLSSDCSLQL NM L+SLVI
Sbjct: 1   MEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAEQIRKDCLSSDCSLQLGNMNLKSLVI 60

Query: 152 ADQHAAVNMYPGPVHTARHTLGI 175
           ADQHAAVNMYPGPVHT RHTLGI
Sbjct: 61  ADQHAAVNMYPGPVHTVRHTLGI 83

The following BLAST results are available for this feature:

BLAST of Spo19530.1 vs. NCBI nr
BLAST of Spo19530.1 vs. UniProtKB/TrEMBL
BLAST of Spo19530.1 vs. ExPASy Swiss-Prot
BLAST of Spo19530.1 vs. TAIR (Arabidopsis)

BLAST of Spo19530.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|527209880\|gb\|EPS74490.1\|	4.9e-54	66.2	hypothetical protein M569_0025...	[more]
gi\|442803208\|gb\|AGC78943.1\|	6.8e-48	96.8	hypothetical protein (mitochon...	[more]
gi\|94502665\|ref\|YP_588403.1\|	1.3e-38	76.1	hypothetical protein ZeamMp158...	[more]
gi\|775286450\|dbj\|GAN86215.1\|	2.1e-28	70.6	hypothetical protein Gain_0022...	[more]
gi\|775290090\|dbj\|GAN74957.1\|	6.0e-28	71.4	hypothetical protein Apmu_0247...	[more]

BLAST of Spo19530.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
S8D505_9LAMI	3.4e-54	66.2	Uncharacterized protein OS=Gen...	[more]
R4IV41_VICFA	4.8e-48	96.8	Uncharacterized protein OS=Vic...	[more]
M0ZXY3_SOLTU	4.3e-41	93.1	Uncharacterized protein OS=Sol...	[more]
K4BH93_SOLLC	6.2e-40	92.0	Uncharacterized protein OS=Sol...	[more]
A0A0C4B3M7_WHEAT	9.0e-39	91.5	Uncharacterized protein OS=Tri...	[more]

BLAST of Spo19530.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo19530.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 207..250 score: 1.1E-89coord: 87..176 score: 1.1
None	No IPR available	PANTHER	PTHR34890:SF1	SUBFAMILY NOT NAMED	coord: 87..176 score: 1.1E-89coord: 207..250 score: 1.1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion