Spo19534.1 (mRNA) | SpinachBase

Overview


Name	Spo19534.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Hedgehog receptor, putative isoform 1
Location	SpoScf_06648 : 656 .. 3285 (-)
Sequence length	786

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCAGCTCCAAATCAAGGCATACAAATCAGTTGTGTTCGATTAGCAAGTGTGACTCAAATTCTGTTCTAAATGAGGTAACATGTCAACTTAGGTCATTGGTAACACTTATATTTATCTTATTGGCTGGCATCTTCAGGAATAGCTTAAGCATGATTTTTATTGTGGCAGTTTCCTTAATTATTATTTGATACGAACTGCTTTTGTGAAATAAATTTTTTGAAATTGATGCATTATGATTTATGAGCACAATTATAAATGTTAATTCCTTTGTTATGAATGCATACCTTGATTCTTAAAGTGAATGGATGGAACCCCTCCCCCCCTGGCATTCCCTTTTATTTCTATCTGAACAGGAGAAAGCCCCCATCTCTTTATGTTGATGTTTTTGGGTTTTTGTTGTTCTTTCCGCATATTCTTAAATGTGTTGCTAATTGAAGTATCTAATCACTTCTATTGATATTTTTCATTATTGCATGAAGTGTCAAATAATTTCTATTAACATTCATCATTATGGCTAGTTTGGTTACAGCCTATATATATGTTTGGAGATCTGTTTTAAAAAGCATTTTTAGCCTAAGTCCAACCGCTGTGTCCAGCTTCCTGTATAATGTGCGTTTTCATAGATATTATGTTGATTTTGCATTAATGGATGCAGATATCAAGAGCATCTTTGACACCAGAATCTAGCTACATTGCTAAACCAGCAGCGTCATGGCTTGACGATTTTCTTGTGTGGTTATCACCTGAAGCTTTTGGTTGTTGCCGAAAGTTTGTGAATGAGAGTTATTGTCCTCCTGATGATCAGGTTGGTGTTTCTTTCTACCCCCTTGTACCCTCCCCCCCTCTCCAACGGCCACAAAAGTATCCAGTGTTGAGTTGAAATGATGATGTCAAGGGAATCTGACTGTCAGGTGTCAGCCAATTGGAGAATCTTTTGTCACAGAAATGGCTAAACATGATTCATAAAGTAAAGAGTGCATTGATCCACAAAGGAAAATGAGAAGATGAGACTTAAACTTGTAAAAAAAGCGTCAAAATGAGAGTAGACTGACCTCACATATCACAATACTGAAGTTGTCCCGCCATTTAGACTGCTCGAGTTCTTGGTGACAAACTGACAATGGAGATAGCATTTCTTAGTTAATTTTATGTTTTTTCACGTGGTTAAAATTATTTCAAGAATGCGATATGTTAGACTTTTTTTTTGGGTAAATGGCAACTGCTGGCTAACAGTGTGAATTAAACATCCCGATTGCATAAAAAAGAAACCAATAAACTTATGATGATTACGCGTTTACACATGTTGTGAACCTTTTGTTTGTACTTGATATGATTATCTTCATCAATTTGCTCACATTTCTGTTTAATGATCATTATCCGCCATTTACTCATTGAACTAATGGTTTTGCCACCCAGGAGTTCTTGGTAGATGTTACTTGTAGGAAGGATTTTGTCAATAGAATATATTCTTCTTGCAGAAGTCCATGTTATTAGTATTTATAATTAATCTGTCTGTTGATTTTTCTTTCCAGCCTCCTTGCTGTTCACCTGATGAAGGTCCTTGTGGTTATGGGGGAGTTTGTGAAGATTGTACAACAGTAATGATGTTCTTCTATATGCCTTAATAATTTTAAATTCCAATTTGTTTAGTAAGATTATTTGACATGTGCTAGTATCAATGTAACATGTAAAATATCGTGCAGTGCTTTCGCCATGCAGACCTGGACGGTGATCGCCCTTCTACTACACAGTTTAGAGAAAAGCTCCCGTGGTTCCTCGATGCGTTGCCTTCTGCTGATTGTGCTAAGGGCGGTCATGGAGCCTACACAACTAGTTTGGACTTGACTGGTCTATTACTATCTCTCTTCCTACTGACCTACTGAACTGTGTCCTCTCCTGTTGATTCTTGATATTCTCTTACAAACTCTAAGTTCCAGAACTGAAAATTTGTGTTCATGAAATCCCAAATCAGGTTATGAGAGTGGTGTTATAAAAGCCTCTGAGTTTCGGACATATCACACACCAGTCAACAAACAGGTTAGTTCATGTCTACAGGAAATAGAATAATCAGCTGTTTCTTGGCCTAATTTAGCATTTGTAATTACCAAGATCTCTAAAGCCATTTGGTTCCTTATCAATGACAGAGTGACTATGTCAACGCACTGCGTGCTGCCCGTGAATTTAGCTCAAAAATTTCTGACTCGCTGAAGGTATAGATTCAGTTATGTGTGTGTGTGTGTGTGTTTTCTTCTTTCCTCCCTAGGCTATAGTGACGTCCTCTTAATATAGAAAGCTTTATCTAAATTTATGTTGTTTTACCTGTTGATCATCGTTGATGGAGCTTTTTTTTAATTTTTTTTTAATTTTGTGTTTCTCATGGTATCAATGTCTATGTATGGCGACTTTGCAGATTGATGTCTTTCCATATTCGGTCTTCTATATATTTTTCGAGCAGTATTTGGACATTTGGACAACTGCTCTGATCAACCCCATATTCGGTCTTCTATATATTTTTCGAGCAGTATTTGGACATTTGGACAACTGCTCTGATCAACCTAGCTATTGCCCTTGGTTAGTATTTCCACAGTGCTTCTTGAAGCGTTTGATTTTGTTATTTATATTAATTTGG

mRNA sequence

TGCAGCTCCAAATCAAGGCATACAAATCAGTTGTGTTCGATTAGCAAGTGTGACTCAAATTCTGTTCTAAATGAGATATCAAGAGCATCTTTGACACCAGAATCTAGCTACATTGCTAAACCAGCAGCGTCATGGCTTGACGATTTTCTTGTGTGGTTATCACCTGAAGCTTTTGGTTGTTGCCGAAAGTTTGTGAATGAGAGTTATTGTCCTCCTGATGATCAGCCTCCTTGCTGTTCACCTGATGAAGGTCCTTGTGGTTATGGGGGAGTTTGTGAAGATTGTACAACATGCTTTCGCCATGCAGACCTGGACGGTGATCGCCCTTCTACTACACAGTTTAGAGAAAAGCTCCCGTGGTTCCTCGATGCGTTGCCTTCTGCTGATTGTGCTAAGGGCGGTCATGGAGCCTACACAACTAGTTTGGACTTGACTGGTTATGAGAGTGGTGTTATAAAAGCCTCTGAGTTTCGGACATATCACACACCAGTCAACAAACAGAGTGACTATGTCAACGCACTGCGTGCTGCCCGTGAATTTAGCTCAAAAATTTCTGACTCGCTGAAGATTGATGTCTTTCCATATTCGGTCTTCTATATATTTTTCGAGCAGTATTTGGACATTTGGACAACTGCTCTGATCAACCCCATATTCGGTCTTCTATATATTTTTCGAGCAGTATTTGGACATTTGGACAACTGCTCTGATCAACCTAGCTATTGCCCTTGGTTAGTATTTCCACAGTGCTTCTTGAAGCGTTTGATTTTGTTATTTATATTAATTTGG

Coding sequence (CDS)

TGCAGCTCCAAATCAAGGCATACAAATCAGTTGTGTTCGATTAGCAAGTGTGACTCAAATTCTGTTCTAAATGAGATATCAAGAGCATCTTTGACACCAGAATCTAGCTACATTGCTAAACCAGCAGCGTCATGGCTTGACGATTTTCTTGTGTGGTTATCACCTGAAGCTTTTGGTTGTTGCCGAAAGTTTGTGAATGAGAGTTATTGTCCTCCTGATGATCAGCCTCCTTGCTGTTCACCTGATGAAGGTCCTTGTGGTTATGGGGGAGTTTGTGAAGATTGTACAACATGCTTTCGCCATGCAGACCTGGACGGTGATCGCCCTTCTACTACACAGTTTAGAGAAAAGCTCCCGTGGTTCCTCGATGCGTTGCCTTCTGCTGATTGTGCTAAGGGCGGTCATGGAGCCTACACAACTAGTTTGGACTTGACTGGTTATGAGAGTGGTGTTATAAAAGCCTCTGAGTTTCGGACATATCACACACCAGTCAACAAACAGAGTGACTATGTCAACGCACTGCGTGCTGCCCGTGAATTTAGCTCAAAAATTTCTGACTCGCTGAAGATTGATGTCTTTCCATATTCGGTCTTCTATATATTTTTCGAGCAGTATTTGGACATTTGGACAACTGCTCTGATCAACCCCATATTCGGTCTTCTATATATTTTTCGAGCAGTATTTGGACATTTGGACAACTGCTCTGATCAACCTAGCTATTGCCCTTGGTTAGTATTTCCACAGTGCTTCTTGAAGCGTTTGATTTTGTTATTTATATTAATTTGG

Protein sequence

CSSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCCRKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWFLDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFSSKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIFRAVFGHLDNCSDQPSYCPWLVFPQCFLKRLILLFILIW

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo19534	Spo19534	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo19534.1	Spo19534.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19534.1.CDS.7	Spo19534.1.CDS.7	CDS
Spo19534.1.CDS.6	Spo19534.1.CDS.6	CDS
Spo19534.1.CDS.5	Spo19534.1.CDS.5	CDS
Spo19534.1.CDS.4	Spo19534.1.CDS.4	CDS
Spo19534.1.CDS.3	Spo19534.1.CDS.3	CDS
Spo19534.1.CDS.2	Spo19534.1.CDS.2	CDS
Spo19534.1.CDS.1	Spo19534.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19534.1.exon.7	Spo19534.1.exon.7	exon
Spo19534.1.exon.6	Spo19534.1.exon.6	exon
Spo19534.1.exon.5	Spo19534.1.exon.5	exon
Spo19534.1.exon.4	Spo19534.1.exon.4	exon
Spo19534.1.exon.3	Spo19534.1.exon.3	exon
Spo19534.1.exon.2	Spo19534.1.exon.2	exon
Spo19534.1.exon.1	Spo19534.1.exon.1	exon

Homology

[Close]

BLAST of Spo19534.1 vs. NCBI nr
Match: gi|902193296|gb|KNA12261.1| (hypothetical protein SOVF_127560 [Spinacia oleracea])

HSP 1 Score: 452.2 bits (1162), Expect = 6.100e-124
Identity = 216/223 (96.86%), Postives = 217/223 (97.31%), Query Frame = 1


		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC
Sbjct: 900  SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 959

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF
Sbjct: 960  RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 1019

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS
Sbjct: 1020 LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 1079

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALIN    L  +F
Sbjct: 1080 SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINLAIALGAVF 1122

[Close]

BLAST of Spo19534.1 vs. NCBI nr
Match: gi|731357470|ref|XP_010690227.1| (PREDICTED: Niemann-Pick C1 protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 427.2 bits (1097), Expect = 2.100e-116
Identity = 200/223 (89.69%), Postives = 210/223 (94.17%), Query Frame = 1


		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SSKS+HTNQLCSISKCDSNS+LNEISRAS TPESSYIAKPAASWLDDFLVWLSPEAFGCC
Sbjct: 897  SSKSKHTNQLCSISKCDSNSLLNEISRASTTPESSYIAKPAASWLDDFLVWLSPEAFGCC 956

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RKFVN SYCPPDDQPPCCSPDEGPCGYGGVC DCTTCFRH DLD DRPST QFREKLPWF
Sbjct: 957  RKFVNGSYCPPDDQPPCCSPDEGPCGYGGVCGDCTTCFRHTDLDNDRPSTAQFREKLPWF 1016

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            L+ALPSADCAKGGHGAYTTSLDLTGYE+G+I+ASEFRTYHTPVN+QSDYVNALRAAREFS
Sbjct: 1017 LNALPSADCAKGGHGAYTTSLDLTGYENGIIRASEFRTYHTPVNRQSDYVNALRAAREFS 1076

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            SKISDSLK+D+FPYSVFYIFFEQYLDIW TALIN    L  +F
Sbjct: 1077 SKISDSLKMDIFPYSVFYIFFEQYLDIWRTALINLAIALGAVF 1119

[Close]

BLAST of Spo19534.1 vs. NCBI nr
Match: gi|645260738|ref|XP_008235959.1| (PREDICTED: Niemann-Pick C1 protein isoform X2 [Prunus mume])

HSP 1 Score: 407.1 bits (1045), Expect = 2.300e-110
Identity = 189/223 (84.75%), Postives = 208/223 (93.27%), Query Frame = 1


		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SS+SRHT+QLCSIS+CDSNS+LNEISRASLTPESSYIAKPAASWLDDFLVW+SPEAFGCC
Sbjct: 910  SSESRHTDQLCSISQCDSNSLLNEISRASLTPESSYIAKPAASWLDDFLVWISPEAFGCC 969

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RK++N SYCPPDDQPPCCSPD+GPCG GGVC+DCTTCFRH+DL  DRPSTTQFREKLPWF
Sbjct: 970  RKYLNGSYCPPDDQPPCCSPDDGPCGVGGVCKDCTTCFRHSDLVNDRPSTTQFREKLPWF 1029

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            L+ALPSADCAKGGHGAYT S+DL GY SGVI+ASEFRTYHTP+NKQ DYVN+LRAAR+FS
Sbjct: 1030 LNALPSADCAKGGHGAYTNSVDLNGYGSGVIRASEFRTYHTPLNKQGDYVNSLRAARDFS 1089

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            S+ISDSLK+D+FPYSVFYIFFEQYLDIW TALIN    L  IF
Sbjct: 1090 SRISDSLKMDIFPYSVFYIFFEQYLDIWRTALINIAIALGAIF 1132

[Close]

BLAST of Spo19534.1 vs. NCBI nr
Match: gi|645260736|ref|XP_008235957.1| (PREDICTED: Niemann-Pick C1 protein isoform X1 [Prunus mume])

HSP 1 Score: 407.1 bits (1045), Expect = 2.300e-110
Identity = 189/223 (84.75%), Postives = 208/223 (93.27%), Query Frame = 1


		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SS+SRHT+QLCSIS+CDSNS+LNEISRASLTPESSYIAKPAASWLDDFLVW+SPEAFGCC
Sbjct: 912  SSESRHTDQLCSISQCDSNSLLNEISRASLTPESSYIAKPAASWLDDFLVWISPEAFGCC 971

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RK++N SYCPPDDQPPCCSPD+GPCG GGVC+DCTTCFRH+DL  DRPSTTQFREKLPWF
Sbjct: 972  RKYLNGSYCPPDDQPPCCSPDDGPCGVGGVCKDCTTCFRHSDLVNDRPSTTQFREKLPWF 1031

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            L+ALPSADCAKGGHGAYT S+DL GY SGVI+ASEFRTYHTP+NKQ DYVN+LRAAR+FS
Sbjct: 1032 LNALPSADCAKGGHGAYTNSVDLNGYGSGVIRASEFRTYHTPLNKQGDYVNSLRAARDFS 1091

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            S+ISDSLK+D+FPYSVFYIFFEQYLDIW TALIN    L  IF
Sbjct: 1092 SRISDSLKMDIFPYSVFYIFFEQYLDIWRTALINIAIALGAIF 1134

[Close]

BLAST of Spo19534.1 vs. NCBI nr
Match: gi|595796963|ref|XP_007201221.1| (hypothetical protein PRUPE_ppa000346mg [Prunus persica])

HSP 1 Score: 406.0 bits (1042), Expect = 5.000e-110
Identity = 188/223 (84.30%), Postives = 208/223 (93.27%), Query Frame = 1


		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SS+SRHT+QLCSIS+CDSNS+LNEISRASLTPESSYIAKPAASWLDDFLVW+SPEAFGCC
Sbjct: 879  SSESRHTDQLCSISQCDSNSLLNEISRASLTPESSYIAKPAASWLDDFLVWISPEAFGCC 938

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RK++N SYCPPDDQPPCCSPD+GPCG GGVC+DCTTCFRH+DL  DRPSTTQFR+KLPWF
Sbjct: 939  RKYLNGSYCPPDDQPPCCSPDDGPCGVGGVCKDCTTCFRHSDLVNDRPSTTQFRDKLPWF 998

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            L+ALPSADCAKGGHGAYT S+DL GY SGVI+ASEFRTYHTP+NKQ DYVN+LRAAR+FS
Sbjct: 999  LNALPSADCAKGGHGAYTNSVDLNGYGSGVIRASEFRTYHTPLNKQGDYVNSLRAARDFS 1058

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            S+ISDSLK+D+FPYSVFYIFFEQYLDIW TALIN    L  IF
Sbjct: 1059 SRISDSLKMDIFPYSVFYIFFEQYLDIWRTALINIAIALGAIF 1101

[Close]

BLAST of Spo19534.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R0E9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_127560 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 4.300e-124
Identity = 216/223 (96.86%), Postives = 217/223 (97.31%), Query Frame = 1


		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC
Sbjct: 900  SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 959

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF
Sbjct: 960  RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 1019

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS
Sbjct: 1020 LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 1079

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALIN    L  +F
Sbjct: 1080 SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINLAIALGAVF 1122

[Close]

BLAST of Spo19534.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EE39_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g212490 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 1.500e-116
Identity = 200/223 (89.69%), Postives = 210/223 (94.17%), Query Frame = 1


		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SSKS+HTNQLCSISKCDSNS+LNEISRAS TPESSYIAKPAASWLDDFLVWLSPEAFGCC
Sbjct: 897  SSKSKHTNQLCSISKCDSNSLLNEISRASTTPESSYIAKPAASWLDDFLVWLSPEAFGCC 956

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RKFVN SYCPPDDQPPCCSPDEGPCGYGGVC DCTTCFRH DLD DRPST QFREKLPWF
Sbjct: 957  RKFVNGSYCPPDDQPPCCSPDEGPCGYGGVCGDCTTCFRHTDLDNDRPSTAQFREKLPWF 1016

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            L+ALPSADCAKGGHGAYTTSLDLTGYE+G+I+ASEFRTYHTPVN+QSDYVNALRAAREFS
Sbjct: 1017 LNALPSADCAKGGHGAYTTSLDLTGYENGIIRASEFRTYHTPVNRQSDYVNALRAAREFS 1076

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            SKISDSLK+D+FPYSVFYIFFEQYLDIW TALIN    L  +F
Sbjct: 1077 SKISDSLKMDIFPYSVFYIFFEQYLDIWRTALINLAIALGAVF 1119

[Close]

BLAST of Spo19534.1 vs. UniProtKB/TrEMBL
Match: M5W6J9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000346mg PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 3.500e-110
Identity = 188/223 (84.30%), Postives = 208/223 (93.27%), Query Frame = 1


		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SS+SRHT+QLCSIS+CDSNS+LNEISRASLTPESSYIAKPAASWLDDFLVW+SPEAFGCC
Sbjct: 879  SSESRHTDQLCSISQCDSNSLLNEISRASLTPESSYIAKPAASWLDDFLVWISPEAFGCC 938

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RK++N SYCPPDDQPPCCSPD+GPCG GGVC+DCTTCFRH+DL  DRPSTTQFR+KLPWF
Sbjct: 939  RKYLNGSYCPPDDQPPCCSPDDGPCGVGGVCKDCTTCFRHSDLVNDRPSTTQFRDKLPWF 998

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            L+ALPSADCAKGGHGAYT S+DL GY SGVI+ASEFRTYHTP+NKQ DYVN+LRAAR+FS
Sbjct: 999  LNALPSADCAKGGHGAYTNSVDLNGYGSGVIRASEFRTYHTPLNKQGDYVNSLRAARDFS 1058

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            S+ISDSLK+D+FPYSVFYIFFEQYLDIW TALIN    L  IF
Sbjct: 1059 SRISDSLKMDIFPYSVFYIFFEQYLDIWRTALINIAIALGAIF 1101

[Close]

BLAST of Spo19534.1 vs. UniProtKB/TrEMBL
Match: B9HPX9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s16840g PE=4 SV=2)

HSP 1 Score: 402.9 bits (1034), Expect = 3.000e-109
Identity = 188/223 (84.30%), Postives = 205/223 (91.93%), Query Frame = 1


		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            S +SRHTNQLCSIS+CDSNS+LNE+SRASL PESSYIAKPAASWLDDFLVWLSPEAFGCC
Sbjct: 880  SLESRHTNQLCSISQCDSNSLLNEVSRASLVPESSYIAKPAASWLDDFLVWLSPEAFGCC 939

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RKF+N +YCPPDDQPPCCSPDE  CG+GGVC+DCTTCFRH+DL  DRPST QFREKLPWF
Sbjct: 940  RKFMNGTYCPPDDQPPCCSPDEFSCGFGGVCKDCTTCFRHSDLVNDRPSTVQFREKLPWF 999

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            LDALPS+DCAKGGHGAYT+S+DL GYE+GVI+ASEFRTYHTPVNKQ DYVNALRAAREFS
Sbjct: 1000 LDALPSSDCAKGGHGAYTSSVDLNGYENGVIRASEFRTYHTPVNKQGDYVNALRAAREFS 1059

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            S+ISDSLKI++FPYSVFYIFFEQYLDIW  ALIN    L  IF
Sbjct: 1060 SRISDSLKIEIFPYSVFYIFFEQYLDIWRIALINIAIALGAIF 1102

[Close]

BLAST of Spo19534.1 vs. UniProtKB/TrEMBL
Match: B9SMD3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0512970 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 6.600e-109
Identity = 189/223 (84.75%), Postives = 203/223 (91.03%), Query Frame = 1


		  
Query: 2   SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
           S +SRHTNQLCSIS+CDSNS+LNEISRA+  PESSYIAKPAASWLDDFLVW+SPEAFGCC
Sbjct: 201 SLESRHTNQLCSISQCDSNSLLNEISRAASVPESSYIAKPAASWLDDFLVWISPEAFGCC 260

Query: 62  RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
           RKF+N +YCPPDDQPPCCSPDEG CG GGVC+DCTTCFRH+DL  DRPST QFREKLPWF
Sbjct: 261 RKFLNGTYCPPDDQPPCCSPDEGTCGVGGVCKDCTTCFRHSDLVNDRPSTVQFREKLPWF 320

Query: 122 LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
           L+ALPSADCAKGGHGAYT S+DL GYESGVI+ASEFRTYHTPVNKQSDYVNAL+AAREFS
Sbjct: 321 LNALPSADCAKGGHGAYTNSVDLNGYESGVIRASEFRTYHTPVNKQSDYVNALQAAREFS 380

Query: 182 SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
           S ISDSLKID+FPYSVFYIFFEQYLDIW  ALIN    L  IF
Sbjct: 381 SSISDSLKIDIFPYSVFYIFFEQYLDIWRIALINIAIALGAIF 423

[Close]

BLAST of Spo19534.1 vs. ExPASy Swiss-Prot
Match: NPCL1_MOUSE (Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.000e-29
Identity = 81/232 (34.91%), Postives = 118/232 (50.86%), Query Frame = 1


		  
Query: 9    NQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCCRKFV--- 68
            N +CS + C+S S+  +I  AS  P  SY+A  A+SW+DDF+ WL+P +  CCR +    
Sbjct: 917  NAICSSAGCESFSLTQKIQYASEFPNQSYVAIAASSWVDDFIDWLTPSS-SCCRIYTRGP 976

Query: 69   -NESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWFLDA 128
              + +CP  D                   +C     +  L   RP+T QF + LPWFL+ 
Sbjct: 977  HKDEFCPSTD----------------TSFNCLKNCMNRTLGPVRPTTEQFHKYLPWFLND 1036

Query: 129  LPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFSSKI 188
             P+  C KGG  AY TS++L+    G I AS+F  YH P+    D+  ALRA+R  ++ I
Sbjct: 1037 TPNIRCPKGGLAAYRTSVNLS--SDGQIIASQFMAYHKPLRNSQDFTEALRASRLLAANI 1096

Query: 189  SDSLK--------IDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIFRAVF 229
            +  L+         +VFPY++  +F++QYL    T L   IF L   F   F
Sbjct: 1097 TAELRKVPGTDPNFEVFPYTISNVFYQQYL----TVLPEGIFTLALCFVPTF 1125

[Close]

BLAST of Spo19534.1 vs. ExPASy Swiss-Prot
Match: NPCL1_RAT (Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.400e-29
Identity = 83/245 (33.88%), Postives = 124/245 (50.61%), Query Frame = 1


		  
Query: 9    NQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCCRKFV--- 68
            N  CS + C S S+  +I  AS  P+ SY+A  A+SW+DDF+ WL+P +  CCR ++   
Sbjct: 917  NATCSSAGCKSFSLTQKIQYASEFPDQSYVAIAASSWVDDFIDWLTPSS-SCCRLYIRGP 976

Query: 69   -NESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWFLDA 128
              + +CP  D                   +C     +  L   RP+  QF + LPWFL+ 
Sbjct: 977  HKDEFCPSTD----------------TSFNCLKNCMNRTLGPVRPTAEQFHKYLPWFLND 1036

Query: 129  LPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFSSKI 188
             P+  C KGG  AY TS++L+    G + AS+F  YH P+    D+  ALRA+R  ++ I
Sbjct: 1037 PPNIRCPKGGLAAYRTSVNLS--SDGQVIASQFMAYHKPLRNSQDFTEALRASRLLAANI 1096

Query: 189  SDSLK--------IDVFPYSVFYIFFEQYL-----DIWTTAL-INPIFGLLYIFRAVFGH 236
            +  L+         +VFPY++  +F++QYL      I+T AL   P F + Y+       
Sbjct: 1097 TADLRKVPGTDPNFEVFPYTISNVFYQQYLTVLPEGIFTLALCFVPTFVVCYLLLG---- 1138

[Close]

BLAST of Spo19534.1 vs. ExPASy Swiss-Prot
Match: NPCL1_HUMAN (Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 1.800e-27
Identity = 81/237 (34.18%), Postives = 115/237 (48.52%), Query Frame = 1


		  
Query: 9    NQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCCRKFVN-- 68
            N +CS + C++ S   +I  A+  PE SY+A PA+SW+DDF+ WL+P +  CCR +++  
Sbjct: 917  NAICSSAGCNNFSFTQKIQYATEFPEQSYLAIPASSWVDDFIDWLTPSS--CCRLYISGP 976

Query: 69   --ESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWFLDA 128
              + +CP       C  +      G V                RPS  QF + LPWFL+ 
Sbjct: 977  NKDKFCPSTVNSLNCLKNCMSITMGSV----------------RPSVEQFHKYLPWFLND 1036

Query: 129  LPSADCAKGGHGAYTTSLDLTG---------------YESGVIKA----------SEFRT 188
             P+  C KGG  AY+TS++LT                  SG I A          S F  
Sbjct: 1037 RPNIKCPKGGLAAYSTSVNLTSDGQVLDTVAILSPRLEYSGTISAHCNLYLLDSTSRFMA 1096

Query: 189  YHTPVNKQSDYVNALRAAREFSSKISDSLK--------IDVFPYSVFYIFFEQYLDI 209
            YH P+    DY  ALRAARE ++ I+  L+         +VFPY++  +F+EQYL I
Sbjct: 1097 YHKPLKNSQDYTEALRAARELAANITADLRKVPGTDPAFEVFPYTITNVFYEQYLTI 1135

[Close]

BLAST of Spo19534.1 vs. ExPASy Swiss-Prot
Match: NPC1_MOUSE (Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 6.500e-25
Identity = 71/228 (31.14%), Postives = 114/228 (50.00%), Query Frame = 1


		  
Query: 3    SKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCCR 62
            S  +  N +C    CD++S++ +I  A+     + +    +SW+DD+  W+SP++  CCR
Sbjct: 900  SSRKGQNMVCGGMGCDNDSLVQQIFNAAELDTYTRVGFAPSSWIDDYFDWVSPQS-SCCR 959

Query: 63   KF-VNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 122
             + V   +C      P C                  C         RP   +F + LP F
Sbjct: 960  LYNVTHQFCNASVMDPTC----------------VRCRPLTPEGKQRPQGKEFMKFLPMF 1019

Query: 123  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 182
            L   P+  C KGGH AY +++++ G ++  I A+ F TYHT +   +DY +A++ AR  +
Sbjct: 1020 LSDNPNPKCGKGGHAAYGSAVNIVGDDT-YIGATYFMTYHTILKTSADYTDAMKKARLIA 1079

Query: 183  SKISDSLK-----IDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            S I+++++       VFPYSVFY+F+EQYL I    + N    L  IF
Sbjct: 1080 SNITETMRSKGSDYRVFPYSVFYVFYEQYLTIIDDTIFNLSVSLGSIF 1109

[Close]

BLAST of Spo19534.1 vs. ExPASy Swiss-Prot
Match: NPC1_PIG (Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.200e-24
Identity = 70/225 (31.11%), Postives = 114/225 (50.67%), Query Frame = 1


		  
Query: 9    NQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCCRKFVNES 68
            N +C    C+++S++ +I  A+     + I    +SW+DD+  W+ P++  CCR +    
Sbjct: 906  NMVCGGLGCNNDSLVQQIFTAAQLDNYTRIGFAPSSWIDDYFDWIKPQS-SCCRVY---- 965

Query: 69   YCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWFLDALPSA 128
                       +  +  C    V   C  C         RP    F   LP FL   P+ 
Sbjct: 966  -----------NSTDQFCNASVVDPTCIRCRPLTSEGKQRPQGEDFMRFLPMFLSDNPNP 1025

Query: 129  DCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFSSKISDSL 188
             C KGGH AY++++++ G  SGV  A+ F TYHT +   +D+++A++ AR  +S I+ ++
Sbjct: 1026 KCGKGGHAAYSSAVNILGNGSGV-GATYFMTYHTVLQASADFIDAMQKARLIASNITRTM 1085

Query: 189  KID-----VFPYSVFYIFFEQYLDIWTTALINPIFGLLYIFRAVF 229
             ++     VFPYSVFY+F+EQYL    T + + IF L     A+F
Sbjct: 1086 GLEASSYRVFPYSVFYVFYEQYL----TVIDDTIFNLGVSLGAIF 1109

[Close]

BLAST of Spo19534.1 vs. TAIR (Arabidopsis)
Match: AT4G38350.2 (Patched family protein)

HSP 1 Score: 376.7 bits (966), Expect = 1.200e-104
Identity = 177/223 (79.37%), Postives = 197/223 (88.34%), Query Frame = 1


		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SS+SRHTNQLCSIS+C+SNS+LNEISRAS   ++SYIAKPAASWLDDFLVWLSPEAFGCC
Sbjct: 913  SSESRHTNQLCSISQCNSNSLLNEISRASQASDTSYIAKPAASWLDDFLVWLSPEAFGCC 972

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RKF N SYCPPDDQPPCC+ +E  C   G+C+DCTTCFRH+DL  DRPST QFREKLPWF
Sbjct: 973  RKFTNGSYCPPDDQPPCCTAEEDICSLDGICKDCTTCFRHSDLVQDRPSTAQFREKLPWF 1032

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            L+ALPSADCAKGGHGAYT S+DL GYESGVI+ASEFRTYHTP+N Q DYVNALRAAREFS
Sbjct: 1033 LNALPSADCAKGGHGAYTNSVDLKGYESGVIQASEFRTYHTPLNTQGDYVNALRAAREFS 1092

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            S+IS+SLKID+FPYSVFYIFFEQYL+IWT AL N    +  IF
Sbjct: 1093 SRISNSLKIDIFPYSVFYIFFEQYLNIWTVALTNLAIAIGAIF 1135

[Close]

BLAST of Spo19534.1 vs. TAIR (Arabidopsis)
Match: AT1G42470.1 (Patched family protein)

HSP 1 Score: 369.8 bits (948), Expect = 1.400e-102
Identity = 167/223 (74.89%), Postives = 198/223 (88.79%), Query Frame = 1


		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SS+SRHTNQLCSI+KC+ NS+LNEI+RASLTPE SYIAKPAASWLDDFLVWLSPEAFGCC
Sbjct: 878  SSESRHTNQLCSINKCNPNSLLNEIARASLTPELSYIAKPAASWLDDFLVWLSPEAFGCC 937

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RKF N ++CPPDDQPPCC P +  CG   VC+DCTTCFRHADL  DRPSTTQF+EKLPWF
Sbjct: 938  RKFTNGTFCPPDDQPPCCPPGQTSCGLSEVCKDCTTCFRHADLSSDRPSTTQFKEKLPWF 997

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            L+ALPSADCAKGGHGAY++S+DL GY +G+I+AS FRTYHTP+NKQ D+VN++RAA+EFS
Sbjct: 998  LNALPSADCAKGGHGAYSSSVDLQGYANGIIQASSFRTYHTPLNKQVDFVNSMRAAQEFS 1057

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            +K+S SLK++++PYSVFY+FFEQYLDIW TALIN    +  +F
Sbjct: 1058 AKVSRSLKMEIYPYSVFYMFFEQYLDIWKTALINLSIAIAAVF 1100

The following BLAST results are available for this feature:

BLAST of Spo19534.1 vs. NCBI nr
BLAST of Spo19534.1 vs. UniProtKB/TrEMBL
BLAST of Spo19534.1 vs. ExPASy Swiss-Prot
BLAST of Spo19534.1 vs. TAIR (Arabidopsis)

BLAST of Spo19534.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902193296\|gb\|KNA12261.1\|	6.1e-124	96.8	hypothetical protein SOVF_1275...	[more]
gi\|731357470\|ref\|XP_010690227.1\|	2.1e-116	89.6	PREDICTED: Niemann-Pick C1 pro...	[more]
gi\|645260738\|ref\|XP_008235959.1\|	2.3e-110	84.7	PREDICTED: Niemann-Pick C1 pro...	[more]
gi\|645260736\|ref\|XP_008235957.1\|	2.3e-110	84.7	PREDICTED: Niemann-Pick C1 pro...	[more]
gi\|595796963\|ref\|XP_007201221.1\|	5.0e-110	84.3	hypothetical protein PRUPE_ppa...	[more]

BLAST of Spo19534.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R0E9_SPIOL	4.3e-124	96.8	Uncharacterized protein OS=Spi...	[more]
A0A0J8EE39_BETVU	1.5e-116	89.6	Uncharacterized protein OS=Bet...	[more]
M5W6J9_PRUPE	3.5e-110	84.3	Uncharacterized protein OS=Pru...	[more]
B9HPX9_POPTR	3.0e-109	84.3	Uncharacterized protein OS=Pop...	[more]
B9SMD3_RICCO	6.6e-109	84.7	Putative uncharacterized prote...	[more]

BLAST of Spo19534.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
NPCL1_MOUSE	2.0e-29	34.9	Niemann-Pick C1-like protein 1...	[more]
NPCL1_RAT	7.4e-29	33.8	Niemann-Pick C1-like protein 1...	[more]
NPCL1_HUMAN	1.8e-27	34.1	Niemann-Pick C1-like protein 1...	[more]
NPC1_MOUSE	6.5e-25	31.1	Niemann-Pick C1 protein OS=Mus...	[more]
NPC1_PIG	4.2e-24	31.1	Niemann-Pick C1 protein OS=Sus...	[more]

BLAST of Spo19534.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT4G38350.2	1.2e-104	79.3	Patched family protein	[more]
AT1G42470.1	1.4e-102	74.8	Patched family protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10796	PATCHED-RELATED	coord: 2..215 score: 1.3E
None	No IPR available	PANTHER	PTHR10796:SF117	PATCHED FAMILY PROTEIN	coord: 2..215 score: 1.3E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030301	cholesterol transport
biological_process	GO:0007165	signal transduction
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008158	hedgehog receptor activity